PFAM Domains • Rutstroemia firma CBS 115.86 v1.0
Annotations/GenomesAmore1Cadsp1Chalo1Lorju1Melbi2Oidma1Phisc1Rhier1Rutfi1TotalAnnotation Description
PFAMs
7,32614,03212,9829,64911,47112,26912,05610,1158,64498,544
111147 transmembrane receptor (rhodopsin family)
406771607559635646537ATPase family associated with various cellular activities (AAA)
368284576475615551565ABC transporter
44444444436ATP synthase alpha/beta family, nucleotide-binding domain
141614151414151414130Elongation factor Tu GTP binding domain
10181913161517199136Helix-loop-helix DNA-binding domain
29554545241Hsp20/alpha crystallin family
8127989108778Hsp70 protein
813121110812121197KH domain
11111117SH2 domain
242727232923252723228SH3 domain
10101010101010101191Actin
32194183103255148135155591,264Ankyrin repeat
6616564135PAN domain
77777787764ADP-ribosylation factor family
122650292432332717250Eukaryotic aspartyl protease
45444444437Cyclic nucleotide-binding domain
11Cytochrome b(C-terminal)/b6/petD
11Cytochrome b/b6/petB
11211121111Cytochrome c
22333233122Double-stranded RNA binding motif
192421191718192020177EF hand
11111111194Fe-4S binding domain
38412342128Fibronectin type III domain
1113Globin
72631222133252121207Glutathione S-transferase, C-terminal domain
11112121111Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
11Hemopexin
71311787981181Homeodomain
24334343228lactate/malate dehydrogenase, NAD binding domain
45564555544Myosin head (motor domain)
652142321551681702261131631,506Cytochrome P450
1201901551301801281521581171,330Protein kinase domain
143833192529302116225Pyridine nucleotide-disulphide oxidoreductase
233429263330262826255Ras family
162931302516312723228Response regulator receiver domain
31533384443RNase H
636966636855656161571RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
11215Serpin (serine protease inhibitor)
12222222217Copper/zinc superoxide dismutase (SODC)
22121323117Iron/manganese superoxide dismutases, alpha-hairpin domain
236191313131887129Subtilase family
4720615980138154136104761,100Sugar (and other) transporter
111316131411171310118Thioredoxin
13132332119Trypsin
44444644438Tubulin/FtsZ family, GTPase domain
35659455345von Willebrand factor type A domain
52148151711399411011675956Zinc finger, C2H2 type
416559515948595151484Zinc finger, C3HC4 type (RING finger)
78116578658Zinc knuckle
32322322322Protein-tyrosine phosphatase
11Somatotropin hormone family
803032711331752562161361151,685short chain dehydrogenase
4114413571941341196171870Zinc-binding dehydrogenase
68777777561Thiolase, N-terminal domain
82530283250331333252Beta-ketoacyl synthase, N-terminal domain
588584885592Fe-2S iron-sulfur cluster binding domain
1113Papain family cysteine protease
11222322116Enolase, C-terminal TIM barrel domain
7108977108975Glutamine amidotransferase class-I
10111010101010101091TCP-1/cpn60 chaperonin family
37535564442Glutamine synthetase, catalytic domain
22222222218Triosephosphate isomerase
142318192316141712156E1-E2 ATPase
8101089988878Core histone H2A/H2B/H3/H4
2125Copper binding proteins, plastocyanin/azurin family
47887587963Alpha amylase, catalytic domain
22212122216Phorbol esters/diacylglycerol binding domain (C1 domain)
87778997870Bacterial transferase hexapeptide (six repeats)
33333343328tRNA synthetases class I (I, L, M and V)
711776787767Cyclin, N-terminal domain
118358294364643027409Carboxylesterase family
4443444431DNA polymerase family B
46666566550ATP synthase subunit C
39665584349Peroxidase
53329172537281410198Beta-lactamase
45634468545C-5 cytosine-specific DNA methylase
282934313530362924276Calcineurin-like phosphoesterase
82632201917231913177Cellulase (glycosyl hydrolase family 5)
78777978767tRNA synthetases class II (D, K and N)
374741404142424138369Mitochondrial carrier protein
11114recA bacterial DNA recombination protein
142620191624231417173Aminotransferase class I and II
7101191111109987Phosphoribosyl transferase domain
10101010101010101090Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11111121110Phosphoglycerate kinase
22222222218Ribosomal protein S4/S9 N-terminal domain
22222222218Ribosomal protein S12/S23
11111117Bacterial regulatory helix-turn-helix proteins, AraC family
1111111119Chaperonin 10 Kd subunit
9191611149131310114C2 domain
181919191917201917167PH domain
1012101111201497104bZIP transcription factor
183629212645232015233Aldehyde dehydrogenase family
1524835272503294694202581723,060Fungal Zn(2)-Cys(6) binuclear cluster domain
223327262537302419243Cytochrome b5-like Heme/Steroid binding domain
26343253230Oxidoreductase molybdopterin binding domain
162520151718211511158Oxidoreductase NAD-binding domain
243331314231323728289SNF2 family N-terminal domain
21222222217Ribosomal protein S7p/S5e
202424202722262423210Ubiquitin-conjugating enzyme
610777977767Isocitrate/isopropylmalate dehydrogenase
22222122217Ribosomal Proteins L2, RNA binding domain
1111111119Hsp90 protein
22222322219Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
21112121112Dihydrofolate reductase
310151283123672Chitin recognition protein
26544254436Cysteine-rich secretory protein family
1111111119Ribosomal protein S3, C-terminal domain
213714585247Cupin
21222222217Annexin
411212112Eukaryotic-type carbonic anhydrase
12112111212Chalcone and stilbene synthases, N-terminal domain
333443343302-oxoacid dehydrogenases acyltransferase (catalytic domain)
3810471188766Catalase
1221211111Disintegrin
4644172331UDP-glucoronosyl and UDP-glucosyl transferase
717881315147796Aminotransferase class-III
22222222218Ribosomal protein S19
1111111119DNA gyrase B
41287914129681Thiamine pyrophosphate enzyme, central domain
44545544237Lyase
22223322220Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
11Sodium:neurotransmitter symporter family
12212222115Adenylate and Guanylate cyclase catalytic domain
1111111119ATP synthase delta (OSCP) subunit
12211131113Orotidine 5'-phosphate decarboxylase / HUMPS family
1111111119Indole-3-glycerol phosphate synthase
12231311216Aromatic amino acid lyase
11211111110Pyruvate kinase, barrel domain
8121211121011121199Kinesin motor domain
283731363528373231295DnaJ domain
141414141414141414126Proteasome subunit
31413101061281288Major intrinsic protein
1111111119ATP synthase
284441354448Glycosyl hydrolase family 1
11111111193'5'-cyclic nucleotide phosphodiesterase
1111111119Profilin
1111111119Ribosomal protein L22p/L17e
22222222218Ribosomal protein L14p/L23e
112122131712182112147Ubiquitin family
55555455645Cofilin/tropomyosin-type actin-binding protein
2223232222014-3-3 protein
26453232229Alkaline phosphatase
14121111214Zinc carboxypeptidase
228155384968594036448Aldo/keto reductase family
161617161717191913150Myb-like DNA-binding domain
44435344435Forkhead domain
6243434127Glycosyl hydrolases family 32 N-terminal domain
1111111119Ribosomal protein L16p/L10e
22122222217Ribosomal protein S14p/S29e
35534333332FKBP-type peptidyl-prolyl cis-trans isomerase
1111111119Glutathione peroxidase
22222122217
11Dehydrin
91212981399889Flavodoxin
1111111119Calreticulin family
418201411717710108Common central domain of tyrosinase
711121011131110893Aminotransferase class-V
1111111119Ribonucleotide reductase, small chain
424742414237434343380DEAD/DEAH box helicase
768886809181859177755Helicase conserved C-terminal domain
11112211111EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
22222222218Ribosomal protein L23
1111111119Pyridoxal-dependent decarboxylase, C-terminal sheet domain
22222222319Ribosomal protein L5
686781386668Pyridoxal-dependent decarboxylase conserved domain
35223322224Citrate synthase, C-terminal domain
55765555548GHMP kinases N terminal domain
88887777666Biotin carboxylase, N-terminal domain
1111111119Tryptophan synthase alpha chain
9151111111316108104Pyridoxal-phosphate dependent enzyme
122619182117181914164NUDIX domain
55557595450pfkB family carbohydrate kinase
3202291621241317145Glycosyl hydrolases family 28
124111515Luciferase-like monooxygenase
22222222218Ribosomal protein L3
22222222218Ribosomal protein L11, RNA binding domain
152219161716211419159Histidine phosphatase superfamily (branch 1)
11111211110Thymidylate synthase
21113210Lipoxygenase
44444444436ATP synthase alpha/beta chain, C terminal domain
55565455545Calponin homology (CH) domain
46664654445Glutamine amidotransferases class-II
22222222218Ribosomal protein S15
11322121114Thaumatin family
1111111119Fructose-1-6-bisphosphatase, N-terminal domain
11211111110Ribonucleotide reductase, all-alpha domain
22222222218Ribosomal protein S2
311236523237SRF-type transcription factor (DNA-binding and dimerisation domain)
889811899777GATA zinc finger
317064506154814550506Amino acid permease
358331054445Prolyl oligopeptidase family
22221222116Ribosomal protein L30p/L7e
9121311129151010101Histidine phosphatase superfamily (branch 2)
1111111119Respiratory-chain NADH dehydrogenase, 30 Kd subunit
57544655445Aconitase family (aconitate hydratase)
18764272239Glycosyl hydrolase family 10
44544374439Glycosyl hydrolases family 17
22222222218Ribosomal protein S5, N-terminal domain
12111111110Nucleoside diphosphate kinase
112Tetraspanin family
22222222117Ribosomal protein S10p/S20e
557551045450Arrestin (or S-antigen), N-terminal domain
1111111119Phosphoglucose isomerase
1111111119Carbohydrate phosphorylase
1111111119SecY translocase
12111121111Respiratory-chain NADH dehydrogenase, 49 Kd subunit
22222222218Ribosomal protein L6
333331044336Polyprenyl synthetase
44445544438Hexokinase
31391211796676Dynamin family
1111111119Transcription factor TFIID (or TATA-binding protein, TBP)
46555566345Rieske [2Fe-2S] domain
34312114Phytochrome region
11Proton-conducting membrane transporter
10111010101099887Biotin-requiring enzyme
1111111119Phosphofructokinase
22222212116Ribosomal protein S17
12112221113Hydroxymethylglutaryl-coenzyme A reductase
34444354435FGGY family of carbohydrate kinases, N-terminal domain
11Sodium:dicarboxylate symporter family
112418141619151211140Enoyl-CoA hydratase/isomerase
22222222218Ribosomal protein S9/S16
22222222218Transcription factor TFIIB repeat
812109109109885Cytidine and deoxycytidylate deaminase zinc-binding region
11121111110Molybdopterin oxidoreductase
712861171114783Chromo (CHRromatin Organisation MOdifier) domain
23323222221Phosphatidylinositol-specific phospholipase C, Y domain
33333242225Phosphatidylinositol-specific phospholipase C, X domain
816981171211890D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
33333333327Malic enzyme, N-terminal domain
232221221176-phosphogluconate dehydrogenase, C-terminal domain
112729253226331614213Multicopper oxidase
11Granulin
111215101014131011106WW domain
1111111119Ribosomal RNA adenine dimethylase
11121121111Yeast PIR protein repeat
1061631131261351461191321041,144WD domain, G-beta repeat
78759656457Heavy-metal-associated domain
11Transferrin
35344364436Adenylate kinase
22222332220Phosphoglucomutase/phosphomannomutase, C-terminal domain
22121221215Ribosomal protein S8
1111111119Ribosomal protein S11
44454444437LIM domain
314Matrixin
23433233326Regulator of chromosome condensation (RCC1) repeat
22222222218Ribosomal protein S13/S18
11
11REV protein (anti-repression trans-activator protein)
22233353225chorismate binding enzyme
3433333332860s Acidic ribosomal protein
44455555542Prenyltransferase and squalene oxidase repeat
68545576551Protein kinase C terminal domain
1111111119Single-strand binding protein family
1111111119S-adenosylmethionine synthetase, N-terminal domain
710989698773Bromodomain
132115151319151412137Acyl-CoA dehydrogenase, C-terminal domain
151515151515151515135Ubiquitin carboxyl-terminal hydrolase
111111118Ribosomal protein L36
24354543333Ribonuclease T2 family
33433333328HSF-type DNA-binding
22222222218SRP54-type protein, GTPase domain
1111111119Urease alpha-subunit, N-terminal domain
919221016121989124Serine carboxypeptidase
11Scorpion short toxin, BmKK2
11Apoptosis regulator proteins, Bcl-2 family
88888888872Phosphatidylinositol 3- and 4-kinase
16334433229Transketolase, thiamine diphosphate binding domain
4875874346Glycosyl hydrolases family 11
23443443330Inositol monophosphatase family
44444344435Glutaredoxin
49555463546Isocitrate lyase family
24232222221Serine hydroxymethyltransferase
33534676340Iron-containing alcohol dehydrogenase
22222222218Ribosomal protein L10
22322232422KOW motif
1111111119Ribosomal protein L34
22222222218RF-1 domain
66424384138Sodium:solute symporter family
11112111110Imidazoleglycerol-phosphate dehydratase
111111118DNA polymerase family A
1111111119IMP dehydrogenase / GMP reductase domain
1111111119Glucose-6-phosphate dehydrogenase, NAD binding domain
57756567553Protein phosphatase 2C
22323223221Nucleotidyl transferase
47135811108672Carbonic anhydrase
1111111119Phosphoribulokinase / Uridine kinase family
512910101188982Fatty acid desaturase
66666666654MutS domain V
11111211110Delta-aminolevulinic acid dehydratase
66845546448Arginase family
66666666654MCM P-loop domain
12233122218Squalene/phytoene synthase
112Bacterial extracellular solute-binding proteins, family 5 Middle
9810910799980FHA domain
327365686375634755541AMP-binding enzyme
33644346437G-protein alpha subunit
7118887118775HMG (high mobility group) box
112627252213272319193His Kinase A (phospho-acceptor) domain
33333333327Armadillo/beta-catenin-like repeat
244433324672354224352Tetratricopeptide repeat
33534324330Ion transport protein
1111111119DNA gyrase/topoisomerase IV, subunit A
9121112111110111299BRCA1 C Terminus (BRCT) domain
5109797116771Glycosyl transferases group 1
59757794457Glycosyl transferase family 2
29334244334SAM domain (Sterile alpha motif)
1111111119linker histone H1 and H5 family
1111111119Ribosomal protein L7/L12 C-terminal domain
1613121428Pectate lyase
11411312115ribonuclease
1111111119Urease, gamma subunit
64544444439CoA-ligase
82226262946301622225Phosphopantetheine attachment site
23334233225Formyl transferase
111110910101011991Metallopeptidase family M24
181718151714141713143Leucine Rich Repeat
3391108485186924838595alpha/beta hydrolase fold
33333333327RNA polymerase Rpb2, domain 6
43434444434PB1 domain
23222222219Staphylococcal nuclease homologue
11111010101011111195Rab-GTPase-TBC domain
1111111119Tudor domain
1111111119WH1 domain
34756464342Zinc finger, ZZ type
2111113111HRDC domain
9111091010119887CBS domain
22222222218Ribosomal protein L13
22222222218Ribosomal protein L4/L1 family
1111111119Clp protease
33533333329S1 RNA binding domain
1111111119HIUase/Transthyretin family
44768485349AhpC/TSA family
44445464439tRNA synthetases class I (W and Y)
222122112UvrD/REP helicase N-terminal domain
57455676550Rhodanese-like domain
22223222219Universal stress protein family
357694576976715561594Acetyltransferase (GNAT) family
21111111110SecE/Sec61-gamma subunits of protein translocation complex
1111111119C-terminal regulatory domain of Threonine dehydratase
23222223220AIR synthase related protein, N-terminal domain
989891088877tRNA synthetase class II core domain (G, H, P, S and T)
1111111119SpoU rRNA Methylase family
22222222218Tetrapyrrole (Corrin/Porphyrin) Methylases
1111111119Glycosyl transferase family, a/b domain
12111111110PDZ domain
61475515105471Class II Aldolase and Adducin N-terminal domain
44444424434Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
45555355441Fes/CIP4, and EFC/F-BAR homology domain
36474455442IQ calmodulin-binding motif
22222222218Phosphoinositide 3-kinase family, accessory domain (PIK domain)
47667455549Phospholipase D Active site motif
12221122215Regulator of G protein signaling domain
44444444436GTPase-activator protein for Ras-like GTPase
47445444440RasGEF domain
46445444439RasGEF N-terminal motif
899888910877RhoGAP domain
66567667655RhoGEF domain
33533344331SPRY domain
33333334328RNA polymerase Rpb1, domain 2
22222222218Guanylate kinase
55454443438Gelsolin repeat
65564875753UBA/TS-N domain
172321192117202217177PHD-finger
11Filamin/ABP280 repeat
1111111119GGL domain
66666666654HECT-domain (ubiquitin-transferase)
32222322220Helix-hairpin-helix motif
12111112111MSP (Major sperm protein) domain
46635446543Ribonuclease III domain
22332222220Region in Clathrin and VPS
23333223324RanBP1 domain
22222222218PPIC-type PPIASE domain
44543444335Zn-finger in Ran binding protein and others
191822172518192017175Zinc finger C-x8-C-x5-C-x3-H type (and similar)
1242315321Poly(ADP-ribose) polymerase catalytic domain
1111111119Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
619383657569978171695F-box domain
1111111119Elongation factor 1 gamma, conserved domain
45636556444Calpain family cysteine protease
33352323226Copper fist DNA binding domain
56555565547CRAL/TRIO domain
13474612325313327246BTB/POZ domain
23645454235Ricin-type beta-trefoil lectin domain
12111111110Inhibitor of Apoptosis domain
34434344332Voltage gated chloride channel
348410456145Caspase domain
4311713181912127133GDSL-like Lipase/Acylhydrolase
1111111119Poly-adenylate binding protein, unique domain
111111118POLO box duplicated region
164053273141312724290ABC transporter transmembrane region
11Integrase core domain
8128679108674FAD binding domain
31111141017124385Condensation domain
1111111119S-adenosyl-L-homocysteine hydrolase, NAD binding domain
11111221111HAMP domain
22222222319ribosomal L5P family C-terminus
56666776655Insulinase (Peptidase family M16)
33334433329Dehydrogenase E1 component
1111111119Lumazine binding domain
66666666654Elongation factor G C-terminus
55554645443HMGL-like
44444444436DnaJ central domain
22343234225Starch binding domain
22223224221Ribosomal protein L1p/L10e family
5129912779575Cation transporting ATPase, C-terminus
7141013119910790Cation transporter/ATPase, N-terminus
12212111112dUTPase
57544655445Aconitase C-terminal domain
43333443330Amino acid kinase family