PFAM Domains • Bisporella sp. PMI_857 v1.0
Annotations/GenomesAcema1Ascsa1Bissp1Glalo1Lorju1Lorma1Marbr1Melbi2Melva1Phisc1TotalAnnotation Description
PFAMs
11,8838,06815,2789,2009,64912,0507,17511,47113,38412,056110,214
111147 transmembrane receptor (rhodopsin family)
2247 transmembrane receptor (Secretin family)
82527259606738756863636ATPase family associated with various cellular activities (AAA)
51477650575333647161563ABC transporter
444444444440ATP synthase alpha/beta family, nucleotide-binding domain
14142014151614141415150Elongation factor Tu GTP binding domain
20141513131410162017152Helix-loop-helix DNA-binding domain
745655345448Hsp20/alpha crystallin family
1271699118871097Hsp70 protein
9991011811101212101KH domain
11Ribulose bisphosphate carboxylase large chain, catalytic domain
1111116SH2 domain
25221324231322292625222SH3 domain
10101011101110101010102Actin
197818810510332272552071351,230Ankyrin repeat
532414166638PAN domain
787777777872ADP-ribosylation factor family
26132218293310244233250Eukaryotic aspartyl protease
444444444440Cyclic nucleotide-binding domain
11Beta/Gamma crystallin
111111111211Cytochrome c
221231232321Double-stranded RNA binding motif
221731919219172119158EF hand
12212111114Fe-4S binding domain
22221223420Fibronectin type III domain
112Globin
19131013221511213125180Glutathione S-transferase, C-terminal domain
112111123215Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
11Hemopexin
9687747811976Homeodomain
424233243431lactate/malate dehydrogenase, NAD binding domain
555565546551Myosin head (motor domain)
18244189131155139461682212261,501Cytochrome P450
1851201861391301831041801591521,538Protein kinase domain
29201920191414253730227Pyridine nucleotide-disulphide oxidoreductase
29234425262623333026285Ras family
29182420302918253031254Response regulator receiver domain
6673336842RNase H
63625962635263686865625RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
11718Reverse transcriptase (RNA-dependent DNA polymerase)
112Serpin (serine protease inhibitor)
223224222223Copper/zinc superoxide dismutase (SODC)
212122212217Iron/manganese superoxide dismutases, alpha-hairpin domain
255311013278131718167Subtilase family
13161119688093461381901361,062Sugar (and other) transporter
17121611131612141417142Thioredoxin
112232322321Trypsin
445444444441Tubulin/FtsZ family, GTPase domain
93652296547von Willebrand factor type A domain
137663972713055139145110864Zinc finger, C2H2 type
6048105651942597159465Zinc finger, C3HC4 type (RING finger)
68476412754Zinc knuckle
233222222222Protein-tyrosine phosphatase
189133189150133130671752642161,646short chain dehydrogenase
9757908571563694133119838Zinc-binding dehydrogenase
768777677769Thiolase, N-terminal domain
2753834282710322033254Beta-ketoacyl synthase, N-terminal domain
7326544888552Fe-2S iron-sulfur cluster binding domain
11Papain family cysteine protease
231122122218Enolase, C-terminal TIM barrel domain
119119988781090Glutamine amidotransferase class-I
10101210101010101010102TCP-1/cpn60 chaperonin family
436333456643Glutamine synthetase, catalytic domain
212222222219Triosephosphate isomerase
19132114192515231914182E1-E2 ATPase
98128891698895Core histone H2A/H2B/H3/H4
111115Copper binding proteins, plastocyanin/azurin family
10695875710875Alpha amylase, catalytic domain
222312222220Phorbol esters/diacylglycerol binding domain (C1 domain)
87101077889983Bacterial transferase hexapeptide (six repeats)
337335333437tRNA synthetases class I (I, L, M and V)
768779767872Cyclin, N-terminal domain
65173922292921436264391Carboxylesterase family
4444344431DNA polymerase family B
656466566656ATP synthase subunit C
549767555861Peroxidase
13627717112252628162Beta-lactamase
542234445639C-5 cytosine-specific DNA methylase
37272724313121353636305Calcineurin-like phosphoesterase
22162213202311192723196Cellulase (glycosyl hydrolase family 5)
777777778771tRNA synthetases class II (D, K and N)
41364938403936414142403Mitochondrial carrier protein
1111116recA bacterial DNA recombination protein
23122715191812162023185Aminotransferase class I and II
116799581191085Phosphoribosyl transferase domain
10101010101010101010100Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
111111111211Phosphoglycerate kinase
222222222220Ribosomal protein S4/S9 N-terminal domain
222222222220Ribosomal protein S12/S23
11111117Bacterial regulatory helix-turn-helix proteins, AraC family
111111111110Chaperonin 10 Kd subunit
12101215111015141613128C2 domain
1819918191019191920170PH domain
128231011179111114126bZIP transcription factor
26163221212615263823244Aldehyde dehydrogenase family
343180368191250223923295544202,950Fungal Zn(2)-Cys(6) binuclear cluster domain
29202720262419252630246Cytochrome b5-like Heme/Steroid binding domain
612343233532Oxidoreductase molybdopterin binding domain
18131515151411171821157Oxidoreductase NAD-binding domain
36303830313124423832332SNF2 family N-terminal domain
223222222221Ribosomal protein S7p/S5e
26222122202121272526231Ubiquitin-conjugating enzyme
869777779774Isocitrate/isopropylmalate dehydrogenase
222222222220Ribosomal Proteins L2, RNA binding domain
111111111110Hsp90 protein
222222222220Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
121111121213Dihydrofolate reductase
135261255891277Chitin recognition protein
533343346539Cysteine-rich secretory protein family
112111111111Ribosomal protein S3, C-terminal domain
104412245840Cupin
221221222218Annexin
3331132218Eukaryotic-type carbonic anhydrase
112111121112Chalcone and stilbene synthases, N-terminal domain
3333433433322-oxoacid dehydrogenases acyltransferase (catalytic domain)
10498452711868Catalase
112111222114Disintegrin
6212148147752UDP-glucoronosyl and UDP-glucosyl transferase
1379787813101496Aminotransferase class-III
222122222219Ribosomal protein S19
111111111110DNA gyrase B
97657679101278Thiamine pyrophosphate enzyme, central domain
534444354440Lyase
222222233222Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
111111122213Adenylate and Guanylate cyclase catalytic domain
111111111110ATP synthase delta (OSCP) subunit
212211112316Orotidine 5'-phosphate decarboxylase / HUMPS family
111111111110Indole-3-glycerol phosphate synthase
143311114Aromatic amino acid lyase
111111111110Pyruvate kinase, barrel domain
10101410111110121111110Kinesin motor domain
40333931363729353437351DnaJ domain
14141514141414141414141Proteasome subunit
136891010810131299Major intrinsic protein
111111111110ATP synthase
648342345544Glycosyl hydrolase family 1
1111111111103'5'-cyclic nucleotide phosphodiesterase
11Protease inhibitor/seed storage/LTP family
111111111110Profilin
112212111113Ribosomal protein L22p/L17e
222122222219Ribosomal protein L14p/L23e
19131312131314172318155Ubiquitin family
555555555550Cofilin/tropomyosin-type actin-binding protein
22323322222314-3-3 protein
523652433336Alkaline phosphatase
116422411123Zinc carboxypeptidase
51325933383421496559441Aldo/keto reductase family
141651716513171819140Myb-like DNA-binding domain
444434454440Forkhead domain
214343134328Glycosyl hydrolases family 32 N-terminal domain
112112111112Ribosomal protein L16p/L10e
222222221219Ribosomal protein S14p/S29e
333334345334FKBP-type peptidyl-prolyl cis-trans isomerase
111111111110Glutathione peroxidase
2222222216
9678996811982Flavodoxin
111111111110Calreticulin family
2152017141312111717147Common central domain of tyrosinase
1110121010119111311108Aminotransferase class-V
111111111110Ribonucleotide reductase, small chain
40435140414641424443431DEAD/DEAH box helicase
86838985808478919285853Helicase conserved C-terminal domain
121111121112EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
212222222219Ribosomal protein L23
111111111110Pyridoxal-dependent decarboxylase, C-terminal sheet domain
222222222220Ribosomal protein L5
768677488869Pyridoxal-dependent decarboxylase conserved domain
233223232224Citrate synthase, C-terminal domain
555565555551GHMP kinases N terminal domain
657788579769Biotin carboxylase, N-terminal domain
112111111111Tryptophan synthase alpha chain
1310149111010111016114Pyridoxal-phosphate dependent enzyme
16151818181515212318177NUDIX domain
559455475958pfkB family carbohydrate kinase
21876995162224127Glycosyl hydrolases family 28
410314113532Luciferase-like monooxygenase
222222222220Ribosomal protein L3
222222222220Ribosomal protein L11, RNA binding domain
21181917161515172221181Histidine phosphatase superfamily (branch 1)
111111111110Thymidylate synthase
13211111314Lipoxygenase
444444444440ATP synthase alpha/beta chain, C terminal domain
555565555551Calponin homology (CH) domain
552463444542Glutamine amidotransferases class-II
222222222220Ribosomal protein S15
11'Cold-shock' DNA-binding domain
221222123219Thaumatin family
111111112111Fructose-1-6-bisphosphatase, N-terminal domain
111111112111Ribonucleotide reductase, all-alpha domain
222222222220Ribosomal protein S2
628237264242SRF-type transcription factor (DNA-binding and dimerisation domain)
8978876118981GATA zinc finger
76392347502231615781487Amino acid permease
4410532235543Prolyl oligopeptidase family
222122112217Ribosomal protein L30p/L7e
12991111118121315111Histidine phosphatase superfamily (branch 2)
111111111110Respiratory-chain NADH dehydrogenase, 30 Kd subunit
555544449550Aconitase family (aconitate hydratase)
745766445755Glycosyl hydrolase family 10
643642443743Glycosyl hydrolases family 17
222222222220Ribosomal protein S5, N-terminal domain
111111111110Nucleoside diphosphate kinase
11114Tetraspanin family
222222122219Ribosomal protein S10p/S20e
545354459448Arrestin (or S-antigen), N-terminal domain
111111111110Phosphoglucose isomerase
111111111110Carbohydrate phosphorylase
111111111110SecY translocase
111111111211Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222222222220Ribosomal protein L6
346434433438Polyprenyl synthetase
453544354441Hexokinase
11112410122151199123Dynamin family
111111111110Transcription factor TFIID (or TATA-binding protein, TBP)
545454255645Rieske [2Fe-2S] domain
11137113220Phytochrome region
979710971011988Biotin-requiring enzyme
111111111110Phosphofructokinase
222222222119Ribosomal protein S17
123112221217Hydroxymethylglutaryl-coenzyme A reductase
445444445543FGGY family of carbohydrate kinases, N-terminal domain
11Sodium:dicarboxylate symporter family
159211114158162015144Enoyl-CoA hydratase/isomerase
222222222220Ribosomal protein S9/S16
222222222220Transcription factor TFIIB repeat
1189898810111092Cytidine and deoxycytidylate deaminase zinc-binding region
211122111113Molybdopterin oxidoreductase
12711661471181193Chromo (CHRromatin Organisation MOdifier) domain
334322332227Phosphatidylinositol-specific phospholipase C, Y domain
544336332437Phosphatidylinositol-specific phospholipase C, X domain
12911688611111294D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
333333233329Malic enzyme, N-terminal domain
2212221222186-phosphogluconate dehydrogenase, C-terminal domain
278231125228322633215Multicopper oxidase
18810101098101413110WW domain
112112111112Ribosomal RNA adenine dimethylase
111221211214Yeast PIR protein repeat
1251101641091261081011351221191,219WD domain, G-beta repeat
658455596558Heavy-metal-associated domain
447345544646Adenylate kinase
322222322323Phosphoglucomutase/phosphomannomutase, C-terminal domain
222222211218Ribosomal protein S8
112211111112Ribosomal protein S11
444454444441LIM domain
112Matrixin
234133233327Regulator of chromosome condensation (RCC1) repeat
222122222219Ribosomal protein S13/S18
11
222233233527chorismate binding enzyme
43333333333160s Acidic ribosomal protein
545455454546Prenyltransferase and squalene oxidase repeat
664743655753Protein kinase C terminal domain
111111111110Single-strand binding protein family
111111111110S-adenosylmethionine synthetase, N-terminal domain
1078888898983Bromodomain
1711181215168131615141Acyl-CoA dehydrogenase, C-terminal domain
15151615151415151615151Ubiquitin carboxyl-terminal hydrolase
111111118Ribosomal protein L36
434454344439Ribonuclease T2 family
333332333329HSF-type DNA-binding
222222222220SRP54-type protein, GTPase domain
111111111110Urease alpha-subunit, N-terminal domain
1599810115162019122Serine carboxypeptidase
11Scorpion short toxin, BmKK2
888888888880Phosphatidylinositol 3- and 4-kinase
333333143329Transketolase, thiamine diphosphate binding domain
622377258749Glycosyl hydrolases family 11
433344333434Inositol monophosphatase family
444444444440Glutaredoxin
833453257646Isocitrate lyase family
223232222222Serine hydroxymethyltransferase
755234345745Iron-containing alcohol dehydrogenase
223222222221Ribosomal protein L10
342321322325KOW motif
111111118Ribosomal protein L34
112Ribosomal protein L33
223223222222RF-1 domain
532222244834Sodium:solute symporter family
111111121111Imidazoleglycerol-phosphate dehydratase
111111118DNA polymerase family A
111111111110IMP dehydrogenase / GMP reductase domain
111111111110Glucose-6-phosphate dehydrogenase, NAD binding domain
577655666659Protein phosphatase 2C
224323232225Nucleotidyl transferase
6586562891065Carbonic anhydrase
111112111111Phosphoribulokinase / Uridine kinase family
1179510971010886Fatty acid desaturase
666666666660MutS domain V
112111111111Delta-aminolevulinic acid dehydratase
555544356446Arginase family
666667666661MCM P-loop domain
334234232228Squalene/phytoene synthase
112Bacterial extracellular solute-binding proteins, family 5 Middle
81110999101010995FHA domain
55307051686325636563553AMP-binding enzyme
334444345438G-protein alpha subunit
98119877881186HMG (high mobility group) box
23151917252115222527209His Kinase A (phospho-acceptor) domain
334332333330Armadillo/beta-catenin-like repeat
41343229321223463335317Tetratricopeptide repeat
623333245233Ion transport protein
111111111110DNA gyrase/topoisomerase IV, subunit A
141181112711111110106BRCA1 C Terminus (BRCT) domain
10678779991183Glycosyl transferases group 1
633252378948Glycosyl transferase family 2
225134344432SAM domain (Sterile alpha motif)
111111111110linker histone H1 and H5 family
111111111110Ribosomal protein L7/L12 C-terminal domain
41763391135Pectate lyase
112111112112ribonuclease
111111111110Urease, gamma subunit
444444446442CoA-ligase
20115029263410291930258Phosphopantetheine attachment site
333334343332Formyl transferase
99139911710111098Metallopeptidase family M24
201261415513171714133Leucine Rich Repeat
65471440481130519192489alpha/beta hydrolase fold
333333333330RNA polymerase Rpb2, domain 6
434434444438PB1 domain
222322222221Staphylococcal nuclease homologue
1110121010129101011105Rab-GTPase-TBC domain
111111111110Tudor domain
111111111110WH1 domain
556755464653Zinc finger, ZZ type
111111118HRDC domain
11988961010101192CBS domain
222222222220Ribosomal protein L13
223222222221Ribosomal protein L4/L1 family
111111111110Clp protease
343533433334S1 RNA binding domain
117111111116HIUase/Transthyretin family
732367387854AhpC/TSA family
545544554647tRNA synthetases class I (W and Y)
211111221214UvrD/REP helicase N-terminal domain
7412558655764Rhodanese-like domain
222221332221Universal stress protein family
67474953573928699571575Acetyltransferase (GNAT) family
111111111110SecE/Sec61-gamma subunits of protein translocation complex
111111111110C-terminal regulatory domain of Threonine dehydratase
222222222220AIR synthase related protein, N-terminal domain
8971087999884tRNA synthetase class II core domain (G, H, P, S and T)
111111111110SpoU rRNA Methylase family
222222222220Tetrapyrrole (Corrin/Porphyrin) Methylases
111111111110Glycosyl transferase family, a/b domain
11Vitamin K-dependent carboxylation/gamma-carboxyglutamic (GLA) domain
1111111119PDZ domain
11395554571064Class II Aldolase and Adducin N-terminal domain
447444444241Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
555555555550Fes/CIP4, and EFC/F-BAR homology domain
553473544545IQ calmodulin-binding motif
222222222220Phosphoinositide 3-kinase family, accessory domain (PIK domain)
452563476547Phospholipase D Active site motif
219127112228Regulator of G protein signaling domain
444444444440GTPase-activator protein for Ras-like GTPase
445444454442RasGEF domain
445444454442RasGEF N-terminal motif
987888889982RhoGAP domain
666666676661RhoGEF domain
337534333438SPRY domain
333333333330RNA polymerase Rpb1, domain 2
222222222220Guanylate kinase
544455544444Gelsolin repeat
576965646761UBA/TS-N domain
22181518191514212320185PHD-finger
111111111110GGL domain
666666666660HECT-domain (ubiquitin-transferase)
221221222218Helix-hairpin-helix motif
111111211111MSP (Major sperm protein) domain
533433557442Ribonuclease III domain
224234222225Region in Clathrin and VPS
333332333228RanBP1 domain
221221222218PPIC-type PPIASE domain
33