PFAM Domains • Lichens
Annotations/GenomesAstpho2Clagr3Dicre1EndpusZ1Lobpul1LobpulAf1LobpulSc1LobpulSp1LobpulSw1Sclsan1SymretAf1SymretSc1SymretSp1SymretSw1TrebA12_1Tryvi1Usnflo1Xanpa2TotalAnnotation Description
PFAMs
7,9527,5279,7508,88910,90010,85510,91310,89810,9187,25310,0489,9649,95710,0639,5868,54010,4247,136171,573
117 transmembrane receptor (rhodopsin family)
11137 transmembrane receptor (Secretin family)
605056455555535555355858575856656550986ATPase family associated with various cellular activities (AAA)
573176383433343134257472807358293037846ABC transporter
44544444445555444477ATP synthase alpha/beta family, nucleotide-binding domain
33EGF-like domain
211420141616161616151919191920141514303Elongation factor Tu GTP binding domain
393988787853344865108Helix-loop-helix DNA-binding domain
133723333316786422278Hsp20/alpha crystallin family
127911161616171699999107127201Hsp70 protein
1210127777778131313138889169KH domain
11114SH2 domain
1241314141414141111221320176SH3 domain
61161110101010101066666101010154Actin
531951556101114921171233141515121512942771,188Ankyrin repeat
11311111133332126PAN domain
11786777777888810777137ADP-ribosylation factor family
21510927252727276991192152414268Eukaryotic aspartyl protease
2241644444441718161819444170Cyclic nucleotide-binding domain
11111117Cystatin domain
1113Cytochrome b(C-terminal)/b6/petD
11Cytochrome b/b6/petB
21111111111111111119Cytochrome c
3212222121222125Double-stranded RNA binding motif
432023333221316317121EF hand
321174Fe-4S binding domain
11Fibronectin type II domain
23111111221218Fibronectin type III domain
112Globin
1212891099894988982099170Glutathione S-transferase, C-terminal domain
31311111113333311132Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
3513344443111293556Homeodomain
2222210Kazal-type serine protease inhibitor domain
11Laminin EGF domain
52422222224444523253lactate/malate dehydrogenase, NAD binding domain
2222210Ligand-gated ion channel
35255555542232354570Myosin head (motor domain)
229132104205196197199197273130313123127158981,799Cytochrome P450
11Phospholipase A2
1821142001581721701661641691382122072032051971191391143,029Protein kinase domain
15131510121212121291515151517201213244Pyridine nucleotide-disulphide oxidoreductase
182613222525252525251313131314232622366Ras family
111171612121212121067777131312187Response regulator receiver domain
14322333254436RNase H
9260785150504848485377737777796253671,143RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
3612939Reverse transcriptase (RNA-dependent DNA polymerase)
3332332333129Copper/zinc superoxide dismutase (SODC)
61312222213333421142Iron/manganese superoxide dismutases, alpha-hairpin domain
11811419212218225111111111124133236Subtilase family
123521253334363434262119212017504132511Sugar (and other) transporter
308308888888333333333010107313Thioredoxin
111115Trefoil (P-type) domain
1049111111411211176Trypsin
21126Thrombospondin type 1 domain
937333333477771143390Tubulin/FtsZ family, GTPase domain
33114232212222242341von Willebrand factor type A domain
77011330383234381312111502349404Zinc finger, C2H2 type
5541532322347546442343234Zinc finger, C3HC4 type (RING finger)
15989111614151369118125827178Zinc knuckle
11111117Ribulose bisphosphate carboxylase, small chain
2212333332111122234Protein-tyrosine phosphatase
579054699488918789435455535467143115861,389short chain dehydrogenase
235019405351525252211717181918737143689Zinc-binding dehydrogenase
25255555562222255469Thiolase, N-terminal domain
333112244394239415201916127416429487Beta-ketoacyl synthase, N-terminal domain
947122222277778423782Fe-2S iron-sulfur cluster binding domain
988898858Papain family cysteine protease
1111111111111111117Enolase, C-terminal TIM barrel domain
11Cytochrome C and Quinol oxidase polypeptide I
11Cytochrome C oxidase subunit II, periplasmic domain
788888888888888888143Glutamine amidotransferase class-I
13101291010101010101211111212101010192TCP-1/cpn60 chaperonin family
11ATP synthase A chain
33354444433333153260Glutamine synthetase, catalytic domain
22222222222222222236Triosephosphate isomerase
131116171717171717161717191626122012297E1-E2 ATPase
11Photosynthetic reaction centre protein
299206877871420202020408107260Core histone H2A/H2B/H3/H4
11111117Bacterial regulatory helix-turn-helix protein, lysR family
111111118Copper binding proteins, plastocyanin/azurin family
11481233333298888777114Alpha amylase, catalytic domain
2222222121220Phorbol esters/diacylglycerol binding domain (C1 domain)
1079656565699995876127Bacterial transferase hexapeptide (six repeats)
43755555556676644492tRNA synthetases class I (I, L, M and V)
861178888881110101196104151Cyclin, N-terminal domain
1771615151615426138143Carboxylesterase family
64744444456776544489DNA polymerase family B
33223333332222254451ATP synthase subunit C
51543333315555623264Peroxidase
175888783173874Beta-lactamase
42535556535555534479C-5 cytosine-specific DNA methylase
11NADH dehydrogenase
332434232725272525243636353626292325513Calcineurin-like phosphoesterase
2622798989822242325141478225Cellulase (glycosyl hydrolase family 5)
666788788655558886120tRNA synthetases class II (D, K and N)
373737333837373737353936403633383636659Mitochondrial carrier protein
1111111119recA bacterial DNA recombination protein
171317141716171716111717171720201413290Aminotransferase class I and II
98444444444444584688Phosphoribosyl transferase domain
111115Sigma-54 interaction domain
17821111010101010102021222120111011253Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
21211111112222211125Phosphoglycerate kinase
32211222222232322237Ribosomal protein S4/S9 N-terminal domain
12122222221111122229Ribosomal protein S12/S23
21111111110Bacterial regulatory helix-turn-helix proteins, AraC family
41411111114444311138Chaperonin 10 Kd subunit
1710139101010101081313111219101012207C2 domain
91661099999118887417815172PH domain
109231111121213131326262329167138275bZIP transcription factor
10111413131313131511141414149221712242Aldehyde dehydrogenase family
10650939496989353162110741,029Fungal Zn(2)-Cys(6) binuclear cluster domain
141871818181818181867779211719258Cytochrome b5-like Heme/Steroid binding domain
24213333322222353247Oxidoreductase molybdopterin binding domain
1010139777777131313139101111177Oxidoreductase NAD-binding domain
243426303535353535232727262730283324534SNF2 family N-terminal domain
12122222221111122229Ribosomal protein S7p/S5e
202223212425252525202423232324232222414Ubiquitin-conjugating enzyme
46437777754444487698Isocitrate/isopropylmalate dehydrogenase
32222222222222222237Ribosomal Proteins L2, RNA binding domain
31411111113333111131Hsp90 protein
22222222222222222236Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
11211111112222111123Dihydrofolate reductase
4166656126649Chitin recognition protein
21133333311111244643Cysteine-rich secretory protein family
1111111111111111117Ribosomal protein S3, C-terminal domain
32534444425667534374Cupin
2122222222221Annexin
11211113112Eukaryotic-type carbonic anhydrase
3111111112114Chalcone and stilbene synthases, N-terminal domain
535333333355553333662-oxoacid dehydrogenases acyltransferase (catalytic domain)
26245555522222247264Catalase
1111111111111Disintegrin
11924444422019192210241141UDP-glucoronosyl and UDP-glucosyl transferase
778455555488887584111Aminotransferase class-III
11122222211122224Ribosomal protein S19
21211111112222211125DNA gyrase B
463444444433334107478Thiamine pyrophosphate enzyme, central domain
33343333333333243355Lyase
52323333323333322250Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
11Sodium:neurotransmitter symporter family
42222214Ferritin-like domain
1211811111111919192015111133Adenylate and Guanylate cyclase catalytic domain
21211111112222211125ATP synthase delta (OSCP) subunit
11112222211111111123Orotidine 5'-phosphate decarboxylase / HUMPS family
112Bacterial DNA-binding protein
11212111112222111124Indole-3-glycerol phosphate synthase
329891281123361Aromatic amino acid lyase
61511111115555611148Pyruvate kinase, barrel domain
37112310101010101010242325233310119299Kinesin motor domain
492747243029292829244849484751263128644DnaJ domain
211416141515151515141616171614141414275Proteasome subunit
10785666661888814874126Major intrinsic protein
21211111112222211125ATP synthase
63133336129Glycosyl hydrolase family 1
11117111111116181817181111263'5'-cyclic nucleotide phosphodiesterase
11111111111111111118Profilin
31322222223333311139Ribosomal protein L22p/L17e
22214444422222122244Ribosomal protein L14p/L23e
20618121111111111111820171815131112246Ubiquitin family
14134444441111144450Cofilin/tropomyosin-type actin-binding protein
1213333333111112333814-3-3 protein
2222222131524Alkaline phosphatase
71412222214444621251Zinc carboxypeptidase
242123182828282728172223222229292618433Aldo/keto reductase family
321326813111213115242723242017915303Myb-like DNA-binding domain
4444444454546Forkhead domain
31522222215565311149Glycosyl hydrolases family 32 N-terminal domain
122222221211112125Ribosomal protein L16p/L10e
111222222111122225Ribosomal protein S14p/S29e
2041633333331616161614433149FKBP-type peptidyl-prolyl cis-trans isomerase
31311111113333411133Glutathione peroxidase
431210
777455555477777787111Flavodoxin
11111111111111111118Calreticulin family
551414141414462395Common central domain of tyrosinase
222222214Thymidine kinase
119126898886111212129797164Aminotransferase class-V
31211111112222211126Ribonucleotide reductase, small chain
554564435856525254436463636260374541957DEAD/DEAH box helicase
9788897689949189956894949190877780741,563Helicase conserved C-terminal domain
522222318Fructose-bisphosphate aldolase class-I
11111111111111111118EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
22222222222112222234Ribosomal protein L23
21312222213332312237Pyridoxal-dependent decarboxylase, C-terminal sheet domain
11111117Potato inhibitor I family
12112222211111122227Ribosomal protein L5
766577777567666777116Pyridoxal-dependent decarboxylase conserved domain
34456566534444339482Citrate synthase, C-terminal domain
55545454455555555586GHMP kinases N terminal domain
567566666577776766111Biotin carboxylase, N-terminal domain
11111111111111111118Tryptophan synthase alpha chain
910147999998141414149999185Pyridoxal-phosphate dependent enzyme
201417151313131313121817181815151612272NUDIX domain
1141058777741010111011467139pfkB family carbohydrate kinase
2222211324Glycosyl hydrolases family 28
12222211114Luciferase-like monooxygenase
32322222222233322241Ribosomal protein L3
32322222223333222242Ribosomal protein L11, RNA binding domain
18111210131313131391212121214151313228Histidine phosphatase superfamily (branch 1)
3122222216Rubredoxin
1131111112333111126Thymidylate synthase
1241111144441130Lipoxygenase
34244444444223344463ATP synthase alpha/beta chain, C terminal domain
35245555552222255569Calponin homology (CH) domain
45233333323333562662Glutamine amidotransferases class-II
222222113Phosphoenolpyruvate carboxylase
32322222233333322244Ribosomal protein S15
22555553234'Cold-shock' DNA-binding domain
111111111110Thaumatin family
51311111113333411135Fructose-1-6-bisphosphatase, N-terminal domain
11111111111111111118Ribonucleotide reductase, all-alpha domain
12122222221111122229Ribosomal protein S2
12122222221111132230SRF-type transcription factor (DNA-binding and dimerisation domain)
127126666678111111127788151GATA zinc finger
33310111111111161331137189Amino acid permease
83765544437777549398Prolyl oligopeptidase family
32222222222211111232Ribosomal protein L30p/L7e
2746888887445431066108Histidine phosphatase superfamily (branch 2)
1111111111111Respiratory-chain NADH dehydrogenase, 30 Kd subunit
24264444442242244462Aconitase family (aconitate hydratase)
44Glycosyl hydrolase family 10
3333333453639Glycosyl hydrolases family 17
32322222223333322243Ribosomal protein S5, N-terminal domain
5141111114444511140Nucleoside diphosphate kinase
1122222111112120Tetraspanin family
1221222222222222232Ribosomal protein S10p/S20e
4444344465244Arrestin (or S-antigen), N-terminal domain
11111111111111111118Phosphoglucose isomerase
21211111112222211125Carbohydrate phosphorylase
31