PFAM Domains • Rhodosporidium toruloides IFO0880 v4.0
Annotations/GenomesRhoba1_1RhodotJ31_1Rhoglu1Rhomuc1Rhoto1Rhoto1_APA2687_1Rhoto_ATCC26217_1Rhoto_IFO0559_1Rhoto_IFO0880_4Rhoto_IFO1236_1TotalAnnotation Description
PFAMs
5,9497,2017,5707,1466,4587,6457,6766,5657,6836,33770,230
32333432363434373434340ATPase family associated with various cellular activities (AAA)
31293030303030323029301ABC transporter
444454554443ATP synthase alpha/beta family, nucleotide-binding domain
11114EGF-like domain
13141414131414121413135Elongation factor Tu GTP binding domain
787797797977Helix-loop-helix DNA-binding domain
78107899810985Hsp70 protein
965675575762KH domain
11114SH2 domain
21121513231516231523176SH3 domain
9101011910109101098Actin
1822319221831887Ankyrin repeat
777777777770ADP-ribosylation factor family
11121212121312121312121Eukaryotic aspartyl protease
333333333330Cyclic nucleotide-binding domain
11Cytochrome b/b6/petB
1111111119Cytochrome c
21332213Double-stranded RNA binding motif
1422215221521571EF hand
222284Fe-4S binding domain
1112229Fibronectin type III domain
104124151211171215112Glutathione S-transferase, C-terminal domain
222222222220Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
544566566653Homeodomain
222222142221lactate/malate dehydrogenase, NAD binding domain
555555565551Myosin head (motor domain)
11101510151614241614145Cytochrome P450
99100107981011041111071041021,033Protein kinase domain
13101010131010141113114Pyridine nucleotide-disulphide oxidoreductase
24242524232525232523241Ras family
15181715171717181718169Response regulator receiver domain
521283194742RNase H
55535751565654575657552RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
1319840Reverse transcriptase (RNA-dependent DNA polymerase)
112122222217Iron/manganese superoxide dismutases, alpha-hairpin domain
336366666651Subtilase family
30363636374241384141378Sugar (and other) transporter
13141414141414151613141Thioredoxin
555555565652Tubulin/FtsZ family, GTPase domain
212121211von Willebrand factor type A domain
28131413341516341334214Zinc finger, C2H2 type
33556394442438180Zinc finger, C3HC4 type (RING finger)
955414661761385Zinc knuckle
233323223225Protein-tyrosine phosphatase
45394735514947524952466short chain dehydrogenase
31232722322728332932284Zinc-binding dehydrogenase
766666666661Thiolase, N-terminal domain
111111111110Beta-ketoacyl synthase, N-terminal domain
4333433434342Fe-2S iron-sulfur cluster binding domain
121211111112Enolase, C-terminal TIM barrel domain
22Cytochrome C and Quinol oxidase polypeptide I
11Cytochrome C oxidase subunit II, periplasmic domain
888888888779Glutamine amidotransferase class-I
9111010111111111111106TCP-1/cpn60 chaperonin family
222223223323Glutamine synthetase, catalytic domain
121111121112Triosephosphate isomerase
10131513121615121511132E1-E2 ATPase
19151715152021252215184Core histone H2A/H2B/H3/H4
111111111110Copper binding proteins, plastocyanin/azurin family
243433343332Alpha amylase, catalytic domain
232354344434Phorbol esters/diacylglycerol binding domain (C1 domain)
785767768667Bacterial transferase hexapeptide (six repeats)
354434434337tRNA synthetases class I (I, L, M and V)
9111112111111101111108Cyclin, N-terminal domain
91071089788985Carboxylesterase family
444454674446DNA polymerase family B
333333333330ATP synthase subunit C
222222222220Peroxidase
344444434337Beta-lactamase
222222222119C-5 cytosine-specific DNA methylase
17171718211716211721182Calcineurin-like phosphoesterase
278716916148Cellulase (glycosyl hydrolase family 5)
444444444541tRNA synthetases class II (D, K and N)
35373636363736363736362Mitochondrial carrier protein
17181718191719201717179Aminotransferase class I and II
633363363642Phosphoribosyl transferase domain
12121211121212111212118Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
111111111110Phosphoglycerate kinase
122222212218Ribosomal protein S4/S9 N-terminal domain
222222222220Ribosomal protein S12/S23
111111111110Chaperonin 10 Kd subunit
1010109121111121112108C2 domain
18101311221212221322155PH domain
10111013131414121510122bZIP transcription factor
11131413121414121412129Aldehyde dehydrogenase family
63505644765464736166607Fungal Zn(2)-Cys(6) binuclear cluster domain
21212319232122242022216Cytochrome b5-like Heme/Steroid binding domain
213123333324Oxidoreductase molybdopterin binding domain
768688888774Oxidoreductase NAD-binding domain
22212222222223222222220SNF2 family N-terminal domain
124233333327Ribosomal protein S7p/S5e
20192019191920201919194Ubiquitin-conjugating enzyme
576655555554Isocitrate/isopropylmalate dehydrogenase
222222222220Ribosomal Proteins L2, RNA binding domain
232332233326Hsp90 protein
222222222220Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
111111111110Dihydrofolate reductase
233333233227Cysteine-rich secretory protein family
111111111110Ribosomal protein S3, C-terminal domain
4343454443382-oxoacid dehydrogenases acyltransferase (catalytic domain)
322222222221Catalase
112111111111Disintegrin
1111116UDP-glucoronosyl and UDP-glucosyl transferase
555555555550Aminotransferase class-III
222222222220Ribosomal protein S19
111111111110DNA gyrase B
443433333333Thiamine pyrophosphate enzyme, central domain
333333333330Lyase
222222222220Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
111111111110Adenylate and Guanylate cyclase catalytic domain
111111111110ATP synthase delta (OSCP) subunit
111111111110Orotidine 5'-phosphate decarboxylase / HUMPS family
211121121214Indole-3-glycerol phosphate synthase
111111111110Aromatic amino acid lyase
111111111110Pyruvate kinase, barrel domain
888888888880Kinesin motor domain
27292829292628282829281DnaJ domain
15141315151615161616151Proteasome subunit
587866666664Major intrinsic protein
111111111110ATP synthase
1111111111103'5'-cyclic nucleotide phosphodiesterase
111111111110Profilin
122212212116Ribosomal protein L22p/L17e
222222222220Ribosomal protein L14p/L23e
15131913222019232020184Ubiquitin family
544444444441Cofilin/tropomyosin-type actin-binding protein
22222222222014-3-3 protein
322232232324Alkaline phosphatase
111111111110Zinc carboxypeptidase
18161714171717181717168Aldo/keto reductase family
1169711881181190Myb-like DNA-binding domain
222222222220Forkhead domain
111111111110Glycosyl hydrolases family 32 N-terminal domain
122212212116Ribosomal protein L16p/L10e
222222212219Ribosomal protein S14p/S29e
333333333330FKBP-type peptidyl-prolyl cis-trans isomerase
111111111110Glutathione peroxidase
12227
433343343434Flavodoxin
111111111110Calreticulin family
565655655553Aminotransferase class-V
222222222220Ribonucleotide reductase, small chain
41485048444951444942466DEAD/DEAH box helicase
75747373767275747274738Helicase conserved C-terminal domain
111111111110EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
222222222220Ribosomal protein L23
111111111110Pyridoxal-dependent decarboxylase, C-terminal sheet domain
111111111110Ribosomal protein L5
555556556653Pyridoxal-dependent decarboxylase conserved domain
233435434233Citrate synthase, C-terminal domain
555555565551GHMP kinases N terminal domain
666666666660Biotin carboxylase, N-terminal domain
112121221114Tryptophan synthase alpha chain
769787897775Pyridoxal-phosphate dependent enzyme
9121212121313111311118NUDIX domain
444444444440pfkB family carbohydrate kinase
11111117Glycosyl hydrolases family 28
222222222220Ribosomal protein L3
222222222220Ribosomal protein L11, RNA binding domain
10111111111111111111109Histidine phosphatase superfamily (branch 1)
112122222217Thymidylate synthase
434564654445ATP synthase alpha/beta chain, C terminal domain
444444444440Calponin homology (CH) domain
422242242428Glutamine amidotransferases class-II
233123223122Ribosomal protein S15
325255455541'Cold-shock' DNA-binding domain
434344444337Thaumatin family
112111111111Fructose-1-6-bisphosphatase, N-terminal domain
111111111110Ribonucleotide reductase, all-alpha domain
222222222220Ribosomal protein S2
445444444441SRF-type transcription factor (DNA-binding and dimerisation domain)
811111112111112911107GATA zinc finger
189108211114221119143Amino acid permease
657656656557Prolyl oligopeptidase family
122212212116Ribosomal protein L30p/L7e
764574674555Histidine phosphatase superfamily (branch 2)
111111111110Respiratory-chain NADH dehydrogenase, 30 Kd subunit
444444444440Aconitase family (aconitate hydratase)
111111111110Glycosyl hydrolases family 17
222222222220Ribosomal protein S5, N-terminal domain
222222222119Nucleoside diphosphate kinase
122212212116Ribosomal protein S10p/S20e
465645545347Arrestin (or S-antigen), N-terminal domain
111111111110Phosphoglucose isomerase
111111111110Carbohydrate phosphorylase
111111111110SecY translocase
111111111110Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222222222220Ribosomal protein L6
333333333330Polyprenyl synthetase
222222222220Hexokinase
365536536345Dynamin family
111111111110Transcription factor TFIID (or TATA-binding protein, TBP)
532342242431Rieske [2Fe-2S] domain
11111117Phytochrome region
878798999882Biotin-requiring enzyme
121112113114Phosphofructokinase
223212222220Ribosomal protein S17
111211111111Hydroxymethylglutaryl-coenzyme A reductase
222222222220FGGY family of carbohydrate kinases, N-terminal domain
888877787775Enoyl-CoA hydratase/isomerase
222222222220Ribosomal protein S9/S16
222222222220Transcription factor TFIIB repeat
788899989883Cytidine and deoxycytidylate deaminase zinc-binding region
222222222220Molybdopterin oxidoreductase
46778541161169Chromo (CHRromatin Organisation MOdifier) domain
111111111110Phosphatidylinositol-specific phospholipase C, Y domain
122112313117Phosphatidylinositol-specific phospholipase C, X domain
674745445551D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
222222222220Malic enzyme, N-terminal domain
1121122122156-phosphogluconate dehydrogenase, C-terminal domain
245445545442Multicopper oxidase
754585585759WW domain
222212212117Ribosomal RNA adenine dimethylase
1051001021031071041011091051061,042WD domain, G-beta repeat
222322222221Heavy-metal-associated domain
333333333330Adenylate kinase
222222222220Phosphoglucomutase/phosphomannomutase, C-terminal domain
122222222118Ribosomal protein S8
121312111316Ribosomal protein S11
556666676659LIM domain
445435535341Regulator of chromosome condensation (RCC1) repeat
222322222221Ribosomal protein S13/S18
11REV protein (anti-repression trans-activator protein)
222222222220chorismate binding enzyme
33333333333060s Acidic ribosomal protein
323243343431Prenyltransferase and squalene oxidase repeat
643474473749Protein kinase C terminal domain
111111111110Single-strand binding protein family
111111111110S-adenosylmethionine synthetase, N-terminal domain
999989989887Bromodomain
11111110121111121112112Acyl-CoA dehydrogenase, C-terminal domain
13151515161616161615153Ubiquitin carboxyl-terminal hydrolase
1111111119Ribosomal protein L36
111111118Ribonuclease T2 family
71312141013149139114HSF-type DNA-binding
222222222220SRP54-type protein, GTPase domain
111111111110Urease alpha-subunit, N-terminal domain
444444444440Serine carboxypeptidase
878888888879Phosphatidylinositol 3- and 4-kinase
121211111112Transketolase, thiamine diphosphate binding domain
212122222218WHEP-TRS domain
333333333330Inositol monophosphatase family
555555555550Glutaredoxin
222222222220Isocitrate lyase family
111111111110Serine hydroxymethyltransferase
222233333326Iron-containing alcohol dehydrogenase
222222222220Ribosomal protein L10
445455565548KOW motif
111111118Ribosomal protein L34
1111116Ribosomal protein L33
233323323226RF-1 domain
223223223223Sodium:solute symporter family
111111111110Imidazoleglycerol-phosphate dehydratase
111111111110DNA polymerase family A
111111111110IMP dehydrogenase / GMP reductase domain
111111111110Glucose-6-phosphate dehydrogenase, NAD binding domain
666666666660Protein phosphatase 2C
223223333225Nucleotidyl transferase
323233333328Carbonic anhydrase
121311111113Phosphoribulokinase / Uridine kinase family
444454454442Fatty acid desaturase
666666666660MutS domain V
111111111110Delta-aminolevulinic acid dehydratase
222222222220Arginase family
666666666660MCM P-loop domain
233323323226Squalene/phytoene synthase
798968968676FHA domain
17141714161716161717161AMP-binding enzyme
647477797765G-protein alpha subunit
877697997877HMG (high mobility group) box
11Cytochrome c oxidase subunit III
13141112141211151214128His Kinase A (phospho-acceptor) domain
323233233428Armadillo/beta-catenin-like repeat
26121310311613321730200Tetratricopeptide repeat
233333333329Ion transport protein
111111111110DNA gyrase/topoisomerase IV, subunit A
799910891081089BRCA1 C Terminus (BRCT) domain
1198987797883Glycosyl transferases group 1
644544444443Glycosyl transferase family 2
11111117SAM domain (Sterile alpha motif)
11322312318linker histone H1 and H5 family
111111111110Ribosomal protein L7/L12 C-terminal domain
11Pectate lyase
111111111110Urease, gamma subunit
333333333330CoA-ligase
433333333331Phosphopantetheine attachment site
222222222220Formyl transferase
99991091099891Metallopeptidase family M24
1531216111411569Leucine Rich Repeat
21453254525427123alpha/beta hydrolase fold
333333433331RNA polymerase Rpb2, domain 6
457667557557PB1 domain
122222222219Staphylococcal nuclease homologue
10121112912129128107Rab-GTPase-TBC domain
111111111110Tudor domain
111111111110WH1 domain
223333333328Zinc finger, ZZ type
2226HRDC domain
755585485860CBS domain
222222222220Ribosomal protein L13
222222222220Ribosomal protein L4/L1 family
111111111110Clp protease
444444444440S1 RNA binding domain
111111111110HIUase/Transthyretin family
333333333330AhpC/TSA family
445444444441tRNA synthetases class I (W and Y)
11111121110UvrD/REP helicase N-terminal domain
398839839464Rhodanese-like domain
221222222219Universal stress protein family
17161813221918212123188Acetyltransferase (GNAT) family
11111117SecE/Sec61-gamma subunits of protein translocation complex
111111111110C-terminal regulatory domain of Threonine dehydratase
222222222220AIR synthase related protein, N-terminal domain
755565565756tRNA synthetase class II core domain (G, H, P, S and T)
11Phage integrase family
222222222220Tetrapyrrole (Corrin/Porphyrin) Methylases
111111111110Glycosyl transferase family, a/b domain
1111116PDZ domain
333333333330Class II Aldolase and Adducin N-terminal domain
22212212115Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
344424424233Fes/CIP4, and EFC/F-BAR homology domain
312152252427IQ calmodulin-binding motif
232322222222Phosphoinositide 3-kinase family, accessory domain (PIK domain)
422242252429Phospholipase D Active site motif
143413313124Regulator of G protein signaling domain
333343443333GTPase-activator protein for Ras-like GTPase
444444444440RasGEF domain
444444444440RasGEF N-terminal motif
13121112141112141114124RhoGAP domain
10121312111212111211116RhoGEF domain
333334334433SPRY domain
333333333330RNA polymerase Rpb1, domain 2
111111111110Guanylate kinase
322232232324Gelsolin repeat
666696696969UBA/TS-N domain
16141315191513171218152PHD-finger
112Filamin/ABP280 repeat
111111118GGL domain
666766666661HECT-domain (ubiquitin-transferase)
12227Helix-hairpin-helix motif
111111111110MSP (Major sperm protein) domain
7166975276873Ribonuclease III domain
255525425338Region in Clathrin and VPS
232332332326RanBP1 domain
221221121216PPIC-type PPIASE domain
1111116Zn-finger in Ran binding protein and others
151269147715813106Zinc finger C-x8-C-x5-C-x3-H type (and similar)
111111111110Poly(ADP-ribose) polymerase catalytic domain
111111111110Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
53161612592017632062338F-box domain
112122222217Elongation factor 1 gamma, conserved domain