PFAM Domains • Gonapodya prolifera v1.0
Annotations/GenomesBatde5Ganpr1TotalAnnotation Description
PFAMs
5,4379,34114,778
1237 transmembrane receptor (rhodopsin family)
4377 transmembrane sweet-taste receptor of 3 GCPR
405696ATPase family associated with various cellular activities (AAA)
6064124ABC transporter
426ATP synthase alpha/beta family, nucleotide-binding domain
11EGF-like domain
151631Elongation factor Tu GTP binding domain
9615Helix-loop-helix DNA-binding domain
246Hsp20/alpha crystallin family
6915Hsp70 protein
91221KH domain
112SH2 domain
45172217SH3 domain
6915Actin
24198222Ankyrin repeat
224PAN domain
8816ADP-ribosylation factor family
43649Eukaryotic aspartyl protease
141529Cyclic nucleotide-binding domain
112Cytochrome c
347Double-stranded RNA binding motif
313162EF hand
2244Fe-4S binding domain
224Fibronectin type III domain
22Globin
31720Glutathione S-transferase, C-terminal domain
134Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
3912Homeodomain
235lactate/malate dehydrogenase, NAD binding domain
44Lectin C-type domain
7815Myosin head (motor domain)
96473Cytochrome P450
148234382Protein kinase domain
92231Pyridine nucleotide-disulphide oxidoreductase
292554Ras family
1515Response regulator receiver domain
235RNase H
6980149RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
22Serpin (serine protease inhibitor)
134Copper/zinc superoxide dismutase (SODC)
426Iron/manganese superoxide dismutases, alpha-hairpin domain
5611Subtilase family
51217Sugar (and other) transporter
81624Thioredoxin
11Trefoil (P-type) domain
21820Trypsin
11Thrombospondin type 1 domain
8715Tubulin/FtsZ family, GTPase domain
1414von Willebrand factor type A domain
47104151Zinc finger, C2H2 type
39107146Zinc finger, C3HC4 type (RING finger)
102232Zinc knuckle
246Protein-tyrosine phosphatase
22116138short chain dehydrogenase
84048Zinc-binding dehydrogenase
6814Thiolase, N-terminal domain
235Beta-ketoacyl synthase, N-terminal domain
46102Fe-2S iron-sulfur cluster binding domain
112Enolase, C-terminal TIM barrel domain
7916Glutamine amidotransferase class-I
10919TCP-1/cpn60 chaperonin family
2810Glutamine synthetase, catalytic domain
112Triosephosphate isomerase
172643E1-E2 ATPase
71522Core histone H2A/H2B/H3/H4
33Bacterial regulatory helix-turn-helix protein, lysR family
11Copper binding proteins, plastocyanin/azurin family
123Alpha amylase, catalytic domain
5813Phorbol esters/diacylglycerol binding domain (C1 domain)
8614Bacterial transferase hexapeptide (six repeats)
527tRNA synthetases class I (I, L, M and V)
162137Cyclin, N-terminal domain
21820Carboxylesterase family
358DNA polymerase family B
336ATP synthase subunit C
11Legume lectin domain
21012Peroxidase
11920Beta-lactamase
527C-5 cytosine-specific DNA methylase
242549Calcineurin-like phosphoesterase
189Cellulase (glycosyl hydrolase family 5)
5611tRNA synthetases class II (D, K and N)
324981Mitochondrial carrier protein
91625Aminotransferase class I and II
81119Phosphoribosyl transferase domain
141428Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
112Phosphoglycerate kinase
224Ribosomal protein S4/S9 N-terminal domain
224Ribosomal protein S12/S23
44Bacterial regulatory helix-turn-helix proteins, AraC family
112Chaperonin 10 Kd subunit
102232C2 domain
161733PH domain
51621bZIP transcription factor
112435Aldehyde dehydrogenase family
156883Fungal Zn(2)-Cys(6) binuclear cluster domain
224062Cytochrome b5-like Heme/Steroid binding domain
145Oxidoreductase molybdopterin binding domain
51116Oxidoreductase NAD-binding domain
152641SNF2 family N-terminal domain
224Ribosomal protein S7p/S5e
232952Ubiquitin-conjugating enzyme
4610Isocitrate/isopropylmalate dehydrogenase
224Ribosomal Proteins L2, RNA binding domain
235Hsp90 protein
112Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
112Dihydrofolate reductase
151126Chitin recognition protein
11415Cysteine-rich secretory protein family
123Ribosomal protein S3, C-terminal domain
1111Annexin
145Eukaryotic-type carbonic anhydrase
11Bacterial regulatory proteins, luxR family
3362-oxoacid dehydrogenases acyltransferase (catalytic domain)
314Catalase
112Disintegrin
2810Aminotransferase class-III
224Ribosomal protein S19
112DNA gyrase B
33Thiamine pyrophosphate enzyme, central domain
347Lyase
224Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
22Sodium:neurotransmitter symporter family
6612Adenylate and Guanylate cyclase catalytic domain
112ATP synthase delta (OSCP) subunit
112Orotidine 5'-phosphate decarboxylase / HUMPS family
112Indole-3-glycerol phosphate synthase
336Pyruvate kinase, barrel domain
172239Kinesin motor domain
363369DnaJ domain
141630Proteasome subunit
347Major intrinsic protein
112ATP synthase
11Glycosyl hydrolase family 1
85133'5'-cyclic nucleotide phosphodiesterase
134Profilin
224Ribosomal protein L22p/L17e
224Ribosomal protein L14p/L23e
132033Ubiquitin family
5611Cofilin/tropomyosin-type actin-binding protein
12314-3-3 protein
347Alkaline phosphatase
4711Zinc carboxypeptidase
53742Aldo/keto reductase family
161329Myb-like DNA-binding domain
246Forkhead domain
11Glycosyl hydrolases family 32 N-terminal domain
112Ribosomal protein L16p/L10e
123Ribosomal protein S14p/S29e
6612FKBP-type peptidyl-prolyl cis-trans isomerase
145Glutathione peroxidase
123
3710Flavodoxin
314Calreticulin family
1010Common central domain of tyrosinase
4913Aminotransferase class-V
213Ribonucleotide reductase, small chain
484593DEAD/DEAH box helicase
6679145Helicase conserved C-terminal domain
112Fructose-bisphosphate aldolase class-I
112EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
224Ribosomal protein L23
123Pyridoxal-dependent decarboxylase, C-terminal sheet domain
112Ribosomal protein L5
2911Pyridoxal-dependent decarboxylase conserved domain
426Citrate synthase, C-terminal domain
6511GHMP kinases N terminal domain
5914Biotin carboxylase, N-terminal domain
112Tryptophan synthase alpha chain
61319Pyridoxal-phosphate dependent enzyme
82836NUDIX domain
246pfkB family carbohydrate kinase
1313Glycosyl hydrolases family 28
11Luciferase-like monooxygenase
224Ribosomal protein L3
224Ribosomal protein L11, RNA binding domain
41115Histidine phosphatase superfamily (branch 1)
112Thymidylate synthase
426ATP synthase alpha/beta chain, C terminal domain
61016Calponin homology (CH) domain
369Glutamine amidotransferases class-II
11Phosphoenolpyruvate carboxylase
224Ribosomal protein S15
11'Cold-shock' DNA-binding domain
11Thaumatin family
112Fructose-1-6-bisphosphatase, N-terminal domain
123Ribonucleotide reductase, all-alpha domain
224Ribosomal protein S2
112SRF-type transcription factor (DNA-binding and dimerisation domain)
71724GATA zinc finger
83846Amino acid permease
7613Prolyl oligopeptidase family
112Ribosomal protein L30p/L7e
167Histidine phosphatase superfamily (branch 2)
112Respiratory-chain NADH dehydrogenase, 30 Kd subunit
246Aconitase family (aconitate hydratase)
11Glycosyl hydrolase family 10
224Ribosomal protein S5, N-terminal domain
459Nucleoside diphosphate kinase
325Tetraspanin family
112Ribosomal protein S10p/S20e
33Arrestin (or S-antigen), N-terminal domain
112Phosphoglucose isomerase
112Carbohydrate phosphorylase
112SecY translocase
112Respiratory-chain NADH dehydrogenase, 49 Kd subunit
224Ribosomal protein L6
336Polyprenyl synthetase
224Hexokinase
459Dynamin family
112Biopterin-dependent aromatic amino acid hydroxylase
112Transcription factor TFIID (or TATA-binding protein, TBP)
21012Rieske [2Fe-2S] domain
11Bacterial regulatory proteins, lacI family
11phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
22Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
7916Biotin-requiring enzyme
134Phosphofructokinase
224Ribosomal protein S17
213Hydroxymethylglutaryl-coenzyme A reductase
448FGGY family of carbohydrate kinases, N-terminal domain
123FERM central domain
112Sodium:dicarboxylate symporter family
213MerR family regulatory protein
63844Enoyl-CoA hydratase/isomerase
213Ribosomal protein S9/S16
235Transcription factor TFIIB repeat
61016Cytidine and deoxycytidylate deaminase zinc-binding region
213Molybdopterin oxidoreductase
51015Chromo (CHRromatin Organisation MOdifier) domain
112Phosphatidylinositol-specific phospholipase C, Y domain
112Phosphatidylinositol-specific phospholipase C, X domain
21012D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
22Malic enzyme, N-terminal domain
11PEP-utilising enzyme, mobile domain
11Bacterial regulatory proteins, gntR family
1236-phosphogluconate dehydrogenase, C-terminal domain
369Multicopper oxidase
11Granulin
61218WW domain
213Ribosomal RNA adenine dimethylase
175147322WD domain, G-beta repeat
437Heavy-metal-associated domain
8614Adenylate kinase
11Pathogenesis-related protein Bet v I family
235Phosphoglucomutase/phosphomannomutase, C-terminal domain
224Ribosomal protein S8
224Ribosomal protein S11
12618LIM domain
336Regulator of chromosome condensation (RCC1) repeat
224Ribosomal protein S13/S18
112Tau and MAP protein, tubulin-binding repeat
224chorismate binding enzyme
34760s Acidic ribosomal protein
112CUB domain
448Prenyltransferase and squalene oxidase repeat
7916Protein kinase C terminal domain
112Single-strand binding protein family
112S-adenosylmethionine synthetase, N-terminal domain
10919Bromodomain
33Bacterial regulatory proteins, tetR family
112536Acyl-CoA dehydrogenase, C-terminal domain
182139Ubiquitin carboxyl-terminal hydrolase
112Ribosomal protein L36
134HSF-type DNA-binding
224SRP54-type protein, GTPase domain
123Urease alpha-subunit, N-terminal domain
336Serine carboxypeptidase
111021Phosphatidylinositol 3- and 4-kinase
22DeoR C terminal sensor domain
224Transketolase, thiamine diphosphate binding domain
112WHEP-TRS domain
224Inositol monophosphatase family
369Glutaredoxin
112Isocitrate lyase family
224Serine hydroxymethyltransferase
11Iron-containing alcohol dehydrogenase
235Ribosomal protein L10
7411KOW motif
112Ribosomal protein L34
11Ribosomal protein L33
134RF-1 domain
112Sodium:solute symporter family
213Imidazoleglycerol-phosphate dehydratase
123DNA polymerase family A
112IMP dehydrogenase / GMP reductase domain
123Glucose-6-phosphate dehydrogenase, NAD binding domain
7916Protein phosphatase 2C
437Nucleotidyl transferase
257Carbonic anhydrase
61420Fatty acid desaturase
5712MutS domain V
112Delta-aminolevulinic acid dehydratase
134Arginase family
8816MCM P-loop domain
112Squalene/phytoene synthase
11Bacterial extracellular solute-binding proteins, family 5 Middle
22Bacterial extracellular solute-binding proteins, family 3
91019FHA domain
165470AMP-binding enzyme
9413G-protein alpha subunit
72027HMG (high mobility group) box
11213His Kinase A (phospho-acceptor) domain
9716Armadillo/beta-catenin-like repeat
423981Tetratricopeptide repeat
21214Ion transport protein
112DNA gyrase/topoisomerase IV, subunit A
33Binding-protein-dependent transport system inner membrane component
11Periplasmic binding proteins and sugar binding domain of LacI family
61117BRCA1 C Terminus (BRCT) domain
5914Glycosyl transferases group 1
6410Glycosyl transferase family 2
224SAM domain (Sterile alpha motif)
123linker histone H1 and H5 family
112Ribosomal protein L7/L12 C-terminal domain
55Pectate lyase
123Urease, gamma subunit
336CoA-ligase
325Phosphopantetheine attachment site
235Formyl transferase
7916Metallopeptidase family M24
54111165Leucine Rich Repeat
104757alpha/beta hydrolase fold
336RNA polymerase Rpb2, domain 6
51015PB1 domain
123Staphylococcal nuclease homologue
13821Rab-GTPase-TBC domain
112Tudor domain
112WH1 domain
31417Zinc finger, ZZ type
123HRDC domain
101727CBS domain
224Ribosomal protein L13
123Ribosomal protein L4/L1 family
123Clp protease
257S1 RNA binding domain
112HIUase/Transthyretin family
459AhpC/TSA family
336tRNA synthetases class I (W and Y)
11UvrD/REP helicase N-terminal domain
7916Rhodanese-like domain
7815Universal stress protein family
183452Acetyltransferase (GNAT) family
112SecE/Sec61-gamma subunits of protein translocation complex
224C-terminal regulatory domain of Threonine dehydratase
235AIR synthase related protein, N-terminal domain
7714tRNA synthetase class II core domain (G, H, P, S and T)
224SpoU rRNA Methylase family
123Tetrapyrrole (Corrin/Porphyrin) Methylases
112Glycosyl transferase family, a/b domain
213PDZ domain
145Class II Aldolase and Adducin N-terminal domain
11Diacylglycerol kinase accessory domain
336Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
257Fes/CIP4, and EFC/F-BAR homology domain
211940IQ calmodulin-binding motif
224Phosphoinositide 3-kinase family, accessory domain (PIK domain)
145Phospholipase D Active site motif
516Regulator of G protein signaling domain
448GTPase-activator protein for Ras-like GTPase
7815RasGEF domain
358RasGEF N-terminal motif
141125RhoGAP domain
10919RhoGEF domain
549SPRY domain
448RNA polymerase Rpb1, domain 2
224Guanylate kinase
6713Gelsolin repeat
111021UBA/TS-N domain
111930PHD-finger
22GGL domain
6612HECT-domain (ubiquitin-transferase)
336Helix-hairpin-helix motif
112MSP (Major sperm protein) domain
12416Ribonuclease III domain
123Region in Clathrin and VPS
336RanBP1 domain
224PPIC-type PPIASE domain
369Zn-finger in Ran binding protein and others
152338Zinc finger C-x8-C-x5-C-x3-H type (and similar)
235B-box zinc finger
123Poly(ADP-ribose) polymerase catalytic domain
44Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
32128160F-box domain
112Elongation factor 1 gamma, conserved domain
112Calpain family cysteine protease
112Copper fist DNA binding domain
71118CRAL/TRIO domain
21820BTB/POZ domain
11Ricin-type beta-trefoil lectin domain
112Inhibitor of Apoptosis domain
347Voltage gated chloride channel
369Caspase domain
279GDSL-like Lipase/Acylhydrolase
112Poly-adenylate binding protein, unique domain
112POLO box duplicated region
232447ABC transporter transmembrane region
279FAD binding domain
224Condensation domain
112S-adenosyl-L-homocysteine hydrolase, NAD binding domain
123HAMP domain
123ribosomal L5P family C-terminus
5712Insulinase (Peptidase family M16)
4610Dehydrogenase E1 component
123Lumazine binding domain
7714Elongation factor G C-terminus
448HMGL-like
347DnaJ central domain
11Starch binding domain
336Ribosomal protein L1p/L10e family
91120Cation transporting ATPase, C-terminus
91322Cation transporter/ATPase, N-terminus
112dUTPase
246Aconitase C-terminal domain
235Amino acid kinase family
112N-(5'phosphoribosyl)anthranilate (PRA) isomerase
112Acyl transferase domain
123Urease beta subunit
11Dihydrodipicolinate synthetase family
254267haloacid dehalogenase-like hydrolase
11Glycosyl hydrolases family 2
11314Glycosyl hydrolases family 18
112Proliferating cell nuclear antigen, N-terminal domain
11Translation initiation factor IF-3, C-terminal domain
11Acylphosphatase
112Adenylosuccinate synthetase
112Asparaginase, N-terminal
336Peptidase S24-like
112Inorganic pyrophosphatase
71118Glycosyl hydrolases family 16
112Glycosyl hydrolases family 15
268NADH:flavin oxidoreductase / NADH oxidase family
2243-hydroxyacyl-CoA dehydrogenase, C-terminal domain
123Glycosyl hydrolase family 20, catalytic domain
347HhH-GPD superfamily base excision DNA repair protein
112AIR carboxylase
156GMC oxidoreductase
134Asparagine synthase
1313Fungal cellulose binding domain
6713Septin
134EF-1 guanine nucleotide exchange domain
22Gas vesicle protein
112Homoserine dehydrogenase
11Flavin-binding monooxygenase-like
235tRNA synthetases class I (E and Q), catalytic domain
112tRNA synthetases class I (R)
336XPG N-terminal domain
101525Metallo-beta-lactamase superfamily
11F5/8 type C domain
358Choline/Carnitine o-acyltransferase
213Putative esterase
11Glycosyl hydrolase family 9
213Ferrochelatase
224Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
123Arginosuccinate synthase
112Electron transfer flavoprotein FAD-binding domain
11DnaB-like helicase N terminal domain
336RNB domain
44Dioxygenase
235CNH domain
33Diacylglycerol kinase catalytic domain
41620Dual specificity phosphatase, catalytic domain
123MyTH4 domain
437P21-Rho-binding domain
141428PX domain
224Ras association (RalGDS/AF-6) domain
5510UBX domain
347VHS domain
112Phosphoinositide 3-kinase C2
123DAHP synthetase I family
437Carbon-nitrogen hydrolase
112N-acetyltransferase
112Prephenate dehydratase
5712Syntaxin
6410Pumilio-family RNA binding repeat
5712Histone-like transcription factor (CBF/NF-Y) and archaeal histone
123Pterin binding enzyme
123ER lumen protein retaining receptor
112Glycoprotease family
112Histidinol dehydrogenase
145impB/mucB/samB family
11Phosphoenolpyruvate carboxykinase C-terminal P-loop domain
112
112Ribosomal L15
112Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
112Ribosomal prokaryotic L21 protein
112Ribosomal L28 family
112Ribosomal L29 protein
112Ribosomal L39 protein
123Ribosomal S17
112Ribulose-phosphate 3 epimerase family
112Translationally controlled tumour protein
33Glycosyl hydrolase family 7
11AP2 domain
336RNA pseudouridylate synthase
4812Histone deacetylase domain
11Glycosyltransferase family 10 (fucosyltransferase) C-term
11POT family
112PWWP domain
81523SET domain
123Isochorismatase family
44Permease family
112Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
336XPG I-region
11Acetokinase family
11AcrB/AcrD/AcrF family
11PRD domain
22DNA photolyase
22Nitroreductase family
235Cytosol aminopeptidase family, catalytic domain
33Sulfatase
1126,7-dimethyl-8-ribityllumazine synthase
112Ribosomal protein S16
112Acyl CoA binding protein
459Cullin family
112Elongation factor TS
268FAD binding domain
11O-methyltransferase domain
257EamA-like transporter family
246
9817ThiF family
112Ribosomal family S4e
31922Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
11Penicillin binding protein transpeptidase domain
11Hepatitis core antigen
11dTDP-4-dehydrorhamnose 3,5-epimerase
145Ammonium Transporter Family
11Transglycosylase
279Sulfate permease family
213MATH domain
112Uncharacterized protein family UPF0004
33Dehydratase family
112Transaldolase/Fructose-6-phosphate aldolase
145Mechanosensitive ion channel
213GTP cyclohydrolase II
1123,4-dihydroxy-2-butanone 4-phosphate synthase
448Adaptor complexes medium subunit family
6410Exonuclease
112Dipeptidyl peptidase IV (DPP IV) N-terminal region
11NB-ARC domain
134Glycosyl hydrolase family 3 N terminal domain
112Ribosomal protein L44
11Sodium:sulfate symporter transmembrane region
112DNA-dependent RNA polymerase
123FAD binding domain in molybdopterin dehydrogenase
11Glycosyl transferase family 4
123Nucleosome assembly protein (NAP)
4711Synaptobrevin
112GMP synthase C terminal domain
246Adenosine/AMP deaminase
145Oxidoreductase FAD-binding domain
213Histidine biosynthesis protein
347Glycosyltransferase family 20
112UDP-glucose/GDP-mannose dehydrogenase family, central domain
123Carbamoyl-phosphate synthase small chain, CPSase domain
246PAS fold
134Probable molybdopterin binding domain
4610Sec1 family
224GDP dissociation inhibitor
268Sodium/hydrogen exchanger family
224RNA polymerase Rpb3/RpoA insert domain
11Inward rectifier potassium channel transmembrane domain
4610Initiation factor 2 subunit family
22PQQ enzyme repeat
123Electron transfer flavoprotein domain
11Uricase
112Ribosomal S3Ae family
112Ribosomal L27 protein
33GTP1/OBG
235Gamma-glutamyltranspeptidase
112GrpE
167TatD related DNase
33Inhibitor of apoptosis-promoting Bax1
112Eukaryotic DNA topoisomerase I, catalytic core
235Dynamin central region
1566-O-methylguanine DNA methyltransferase, DNA binding domain
22Bacteriorhodopsin-like protein
3710Carboxyl transferase domain
224UbiA prenyltransferase family
11DegT/DnrJ/EryC1/StrS aminotransferase family
246Endoribonuclease L-PSP
11Vinculin family
123Phosphorylase superfamily
7916Cys/Met metabolism PLP-dependent enzyme
246Glycosyl hydrolases family 31
134NADH ubiquinone oxidoreductase, 20 Kd subunit
2222ABC-2 type transporter
257Amino-transferase class IV
347CDP-alcohol phosphatidyltransferase
112Calpain large subunit, domain III
145ATP dependent DNA ligase domain
145FMN-dependent dehydrogenase
123Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
1453-beta hydroxysteroid dehydrogenase/isomerase family
11Glycosyl hydrolases family 38 N-terminal domain
22Nitrite and sulphite reductase 4Fe-4S domain
11Presenilin
11Copper type II ascorbate-dependent monooxygenase, N-terminal domain
112Ribosomal protein S18
112Galactose-1-phosphate uridyl transferase, N-terminal domain
235Ubiquitin carboxyl-terminal hydrolase, family 1
11
112Ribosomal protein S19e
112Ribosomal protein S6e
11Receptor family ligand binding region
55Pectinesterase
336Transcription factor S-II (TFIIS)
112Surface antigen
369emp24/gp25L/p24 family/GOLD
112NifU-like domain
123Cyclin-dependent kinase regulatory subunit
112Asparaginase
112F-actin capping protein, beta subunit
11Fructose-bisphosphate aldolase class-II
123Semialdehyde dehydrogenase, NAD binding domain
224DNA mismatch repair protein, C-terminal domain
11Alpha-L-fucosidase
11Dephospho-CoA kinase
213MAPEG family
213G10 protein
11Heme oxygenase
123Succinate dehydrogenase/Fumarate reductase transmembrane subunit
123DNA topoisomerase
11Elongation factor P (EF-P) OB domain
112Enhancer of rudimentary
11Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
123RNA 3'-terminal phosphate cyclase
65113' exoribonuclease family, domain 1
213tRNA pseudouridine synthase D (TruD)
11Coenzyme A transferase
5510SPFH domain / Band 7 family
224Cytidylyltransferase family
22Formamidopyrimidine-DNA glycosylase N-terminal domain
224GDA1/CD39 (nucleoside phosphatase) family
268GNS1/SUR4 family
112Bacterial-like globin
123Hydroxymethylglutaryl-coenzyme A synthase N terminal
112Ribosomal protein L21e
112Ribosomal protein L36e
112Ribosomal protein L6e
123Phosphatidylethanolamine-binding protein
11
224RIO1 family
314Tub family
123Alanine racemase, N-terminal domain
112Uncharacterized protein family UPF0016
33Putative RNA methylase family UPF0020
112PP-loop family
112Shwachman-Bodian-Diamond syndrome (SBDS) protein
112SNO glutamine amidotransferase family
112Translation initiation factor 1A / IF-1
11Asp/Glu/Hydantoin racemase
11Copper amine oxidase, enzyme domain
112Dihydroorotate dehydrogenase
11GPR1/FUN34/yaaH family
11Lysyl oxidase
11Macrophage migration inhibitory factor (MIF)
44816S rRNA methyltransferase RsmB/F
112RNA polymerase Rpb5, C-terminal domain
112RNA polymerase Rpb6
448RNA polymerase Rpb3/Rpb11 dimerisation domain
112RNA polymerases N / 8 kDa subunit
22Peptidyl-tRNA hydrolase
112Ribosomal protein L17
112Ribosomal protein L31e
123Ribosomal protein L34e
112Ribosomal protein S28e
224Ribosomal protein S8e
112Shikimate kinase
123Trehalase
11Uncharacterized protein family UPF0029
459Dihydrouridine synthase (Dus)
112Uroporphyrinogen decarboxylase (URO-D)
112ubiE/COQ5 methyltransferase family
224NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
11
22Beta-eliminating lyase
112Adenylate cyclase associated (CAP) N terminal
235Casein kinase II regulatory subunit
112Cytochrome c oxidase subunit Vb
8715Clathrin adaptor complex small chain
112Coproporphyrinogen III oxidase
224Dynein light chain type 1
325Ergosterol biosynthesis ERG4/ERG24 family
112DNA/RNA non-specific endonuclease
44Formate/nitrite transporter
112GTP cyclohydrolase I
11Glycine radical
235HIT domain
134Indoleamine 2,3-dioxygenase
112Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain
4610Oxysterol-binding protein
112Phosphomannose isomerase type I
235Protein prenyltransferase alpha subunit repeat
1126-pyruvoyl tetrahydropterin synthase
257Pyridoxamine 5'-phosphate oxidase
11Membrane dipeptidase (Peptidase family M19)
112Ribosomal protein L19
224Ribosomal protein L24e
112Ribosomal protein L35Ae
5611Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
112Ribosomal protein S21e
112Ribosomal protein S7e
336Translation initiation factor SUI1
112Putative undecaprenyl diphosphate synthase
112Carbohydrate kinase
112Thioredoxin-like [2Fe-2S] ferredoxin
112SAICAR synthetase
11Xylose isomerase-like TIM barrel
235Alanine dehydrogenase/PNT, C-terminal domain
448Aldose 1-epimerase
112Chorismate synthase
213Cytochrome c/c1 heme lyase
22729FAD dependent oxidoreductase
112F-actin capping protein alpha subunit
112Formate--tetrahydrofolate ligase
112Fibrillarin
213Malate synthase
123Ribosomal protein L19e
11Ribosomal protein L9, N-terminal domain
112Ribosomal protein S24e
112Ribosomal protein S26e
112Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold
1127,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
11Thymosin beta-4 family
11Phosphoenolpyruvate carboxykinase
112Ribosomal protein L13e
112Telomere recombination
336CAP-Gly domain
112
123Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
11Creatinase/Prolidase N-terminal domain
31013DSBA-like thioredoxin domain
11Pyruvate phosphate dikinase, PEP/pyruvate binding domain
11Polypeptide deformylase
112Pterin 4 alpha carbinolamine dehydratase
224mRNA capping enzyme, catalytic domain
7815OB-fold nucleic acid binding domain
11Peptidase family S49
9514Kelch motif
112Ribonuclease HII
44
8816FYVE zinc finger
549Sec7 domain
63036NAD dependent epimerase/dehydratase family
112Porphobilinogen deaminase, dipyromethane cofactor binding domain
224SIS domain
112Helix-turn-helix
33Phosphate transporter family
336ARID/BRIGHT DNA binding domain
11Collagen triple helix repeat (20 copies)
55Chromo shadow domain
112Clathrin propeller repeat
11Topoisomerase DNA binding C4 zinc finger
11819JAB1/Mov34/MPN/PAD-1 ubiquitin protease
141731PCI domain
11Angiotensin-converting enzyme
112tRNA synthetases class I (C) catalytic domain
7613Oxidoreductase family, NAD-binding Rossmann fold
224tRNA synthetases class II core domain (F)
112tRNA synthetases class II (A)
5611Putative GTPase activating protein for Arf
213tRNA pseudouridine synthase
426ENTH domain
134NF-X1 type zinc finger
161632LSM domain
11R3H domain
1010Amidase
145BAH domain
459AN1-like Zinc finger
33Peptidase family M13
123Peptidase family M3
549Peptidase family M1 domain
224Peptidase family M41
358Peptidase family M48
11Acetohydroxy acid isomeroreductase, catalytic domain
314Low molecular weight phosphotyrosine protein phosphatase
11D-mannose binding lectin
11MAGE family
224Eukaryotic porin
112GRIP domain
325Skp1 family, dimerisation domain
336Cytidylyltransferase-like
11Pyroglutamyl peptidase
336PUA domain
112Class-II DAHP synthetase family
21012LysM domain
4610S4 domain
112PWI domain
123Proprotein convertase P-domain
156IBR domain, a half RING-finger domain
112Type I 3-dehydroquinase
112Shikimate / quinate 5-dehydrogenase
61420Transmembrane amino acid transporter protein
112Frataxin-like domain
112GXGXG motif
1414FAD binding domain
11
112V-type ATPase 116kDa subunit family
145Glycosyl transferase family 8
112Phosphoribosyl-AMP cyclohydrolase
112Phosphoribosyl-ATP pyrophosphohydrolase
426Phosphatidylinositol-4-phosphate 5-Kinase
123Phosphoadenosine phosphosulfate reductase family
123TruB family pseudouridylate synthase (N terminal domain)
112Respiratory-chain NADH dehydrogenase 51 Kd subunit
336ATP-NAD kinase
224Iron-sulphur cluster biosynthesis
252247Polysaccharide deacetylase
5712DHHC palmitoyltransferase
459Glycosyl hydrolase family 47
22931PPR repeat
112Adenosylmethionine decarboxylase
11Herpesvirus glycoprotein D/GG/GX domain
112GIY-YIG catalytic domain
156CorA-like Mg2+ transporter protein
4610Cation efflux family
4812Peptidase family M20/M25/M40
22Bacterial extracellular solute-binding protein
7916Acyltransferase
246MatE
5510DnaJ C terminal domain
268Fumarylacetoacetate (FAA) hydrolase family
112Spermine/spermidine synthase domain
41620FAD binding domain
112Natural resistance-associated macrophage protein
11Molydopterin dinucleotide binding domain
369PAP2 superfamily
235Aminomethyltransferase folate-binding domain
178MaoC like domain
11Myosin tail
22Adenylylsulphate kinase
121022G-patch domain
336Putative tRNA binding domain
325GAF domain
2356-phosphofructo-2-kinase
112NifU-like N terminal domain
99Flavin containing amine oxidoreductase
134Cyclin M transmembrane N-terminal domain
112Glycine cleavage H-protein
21618
112Ribosomal protein S27a
9817Adaptin N terminal region
112Protein phosphatase 2A regulatory B subunit (B56 family)
235I/LWEQ domain
2353'-5' exonuclease
112Flavin reductase like domain
123Proline dehydrogenase
336MutS domain I
112Peptide methionine sulfoxide reductase
22Hpt domain
11Ribosomal protein L35
112Choline/ethanolamine kinase
112ATP phosphoribosyltransferase
178Phosphotransferase enzyme family
112SelR domain
11Methylmalonyl-CoA mutase
347Chitin synthase
112Conserved region in glutamate synthase
1234'-phosphopantetheinyl transferase superfamily
112Peptidase C13 family
224Eukaryotic initiation factor 4E
112Ribosomal protein L32
213Myo-inositol-1-phosphate synthase
112Macro domain
123Type I phosphodiesterase / nucleotide pyrophosphatase
123Ribosomal protein S27
112Metalloenzyme superfamily
22Proteolipid membrane potential modulator
112SOR/SNZ family
112Riboflavin kinase
11
358Rhomboid family
347Sodium/calcium exchanger protein
22Queuine tRNA-ribosyltransferase
224UTP--glucose-1-phosphate uridylyltransferase
11Transcriptional regulator
314Smr domain
112IPP transferase
325Cobalamin-independent synthase, Catalytic domain
336BolA-like protein
112Ham1 family
459FtsJ-like methyltransferase
112Quinolinate phosphoribosyl transferase, C-terminal domain
22UreF
112Arylesterase
112Nucleoside transporter
549Patatin-like phospholipase
11Lysophospholipase catalytic domain
2810Dienelactone hydrolase family
257STAS domain
347Large-conductance mechanosensitive channel, MscL
112Poly A polymerase head domain
11tRNA (Guanine-1)-methyltransferase
11ATP-sulfurylase
112Importin beta binding domain
123Toprim domain
63844MYND finger
11Glycosyltransferase family 25 (LPS biosynthesis protein)
11Acyl-CoA oxidase
33Acyltransferase family
22Sodium Bile acid symporter family
1123-dehydroquinate synthase
14923Lipase (class 3)
112Ribosome recycling factor
123Divalent cation transporter
11Na+ dependent nucleoside transporter N-terminus
11UreD urease accessory protein
112Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A
11Ribosomal L22e protein family
112Ribosomal L27e protein family
112Ribosomal L28e protein family
11Ribosomal L29e protein family
112Ribosomal L37ae protein family
112Ribosomal L38e protein family
11Ribosomal L32p protein family
112NIF3 (NGG1p interacting factor 3)
112Alternative oxidase
22Ilarvirus coat protein
11DeoC/LacD family aldolase
33Glycolipid 2-alpha-mannosyltransferase
51116Ferric reductase like transmembrane component
112MraW methylase family
336snoRNA binding domain, fibrillarin
123[2Fe-2S] binding domain
22Penicillin amidase
235Surp module
213AICARFT/IMPCHase bienzyme
1125-formyltetrahydrofolate cyclo-ligase family
112ATP synthase subunit D
1212Hemerythrin HHE cation binding domain
11Chorismate mutase type II
33IPT/TIG domain
11FG-GAP repeat
112Transglutaminase-like superfamily
369ACT domain
145DIL domain
224FF domain
235NAC domain
235Proteasome/cyclosome repeat
11START domain
246MOZ/SAS family
112Retinoblastoma-associated protein B domain
224Putative diphthamide synthesis protein
112Domain of unknown function UPF0086
11BadF/BadG/BcrA/BcrD ATPase family
112AMMECR1
123RibD C-terminal domain
224Domain found in IF2B/IF5
112Memo-like protein
112RNase P subunit p30
11EVE domain
112Iron-sulfur cluster assembly protein
112RNA 2'-phosphotransferase, Tpt1 / KptA family
112Uncharacterised protein family UPF0047
123DNA primase small subunit
224Rpp14/Pop5 family
123Diphthamide synthase
11Putative heavy-metal-binding
112Ribosomal protein L37e
358Nucleotidyltransferase domain
112eIF-6 family
134Glycosyl hydrolase family 3 C-terminal domain
112Deoxyhypusine synthase
347Prefoldin subunit
11SRP19 protein
11Cobalamin adenosyltransferase
11Sulfite exporter TauE/SafE
6101650S ribosome-binding GTPase
11CYTH domain
112Ribosomal protein L14
123Protein of unknown function DUF84
224Protein of unknown function DUF89
11TRAM domain
112Integral membrane protein DUF92
11ArgJ family
11TraB family
1910DJ-1/PfpI family
257HD domain
213MoaC family
235Hydantoinase/oxoprolinase
112tRNA intron endonuclease, catalytic C-terminal domain
11Survival protein SurE
4711Amidohydrolase family
112Peptidyl-tRNA hydrolase PTH2
112Double-stranded DNA-binding domain
11Mitochondrial biogenesis AIM24
257VIT family
112ATP synthase (F/14-kDa) subunit
112ATP synthase (E/31 kDa) subunit
112ATP synthase (C/AC39) subunit
11Translin family
112TFIIE alpha subunit
112N2,N2-dimethylguanosine tRNA methyltransferase
11BNR/Asp-box repeat
22Reeler domain
33Glycosyl hydrolase family 45
426eIF4-gamma/eIF5/eIF2-epsilon
11BCCT, betaine/carnitine/choline family transporter
213SCP-2 sterol transfer family
538SAP domain
112CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
11Cytochrome c oxidase subunit VIa
112MAS20 protein import receptor
22Melibiase
33Aromatic-di-Alanine (AdAR) repeat
11Carboxypeptidase Taq (M32) metallopeptidase
112SURF4 family
112Palmitoyl protein thioesterase
11Extensin-like protein repeat
22460Kd inner membrane protein
112Josephin
11Ornithine decarboxylase antizyme
112SURF1 family
112DAD family
123Hydroxyethylthiazole kinase family
224Phosducin
112RHO protein GDP dissociation inhibitor
112Aminopeptidase I zinc metalloprotease (M18)
28129Fungalysin metallopeptidase (M36)
145X-Pro dipeptidyl-peptidase (S15 family)
55Permease for cytosine/purines, uracil, thiamine, allantoin
336
235Nuclear transport factor 2 (NTF2) domain
11Adenosine-deaminase (editase) domain
224Beige/BEACH domain
11DENN (AEX-3) domain
325MGS-like domain
112Repair protein Rad1/Rec1/Rad17
448Rap/ran-GAP
41014Sir2 family
268Zn-finger in ubiquitin-hydrolases and other protein
437Kinase associated domain 1
235RNA polymerases M/15 Kd subunit
112Dihydroneopterin aldolase
112Prephenate dehydrogenase
44Glycosyl hydrolase family 26
11XYPPX repeat (two copies)
112Peptidase family M50
112Cytochrome C1 family
235PAZ domain
257Piwi domain
22TRAF-type zinc finger
3912AT hook motif
11BAG domain
448Formin Homology 2 Domain
33SAD/SRA domain
11Homeobox associated leucine zipper
112HAT (Half-A-TPR) repeat
44Hr1 repeat
11Immunoreceptor tyrosine-based activation motif
235ATP-dependent protease La (LON) substrate-binding domain
325PXA domain
224Regulatory subunit of type II PKA R-subunit
11STE like transcription factor
235SWIB/MDM2 domain
123Vacuolar sorting protein 9 (VPS9) domain
4610WH2 motif
224Putative zinc finger in N-recognin (UBR box)
123Villin headpiece domain
325Dynamin GTPase effector domain
11GYF domain
2810BTB/POZ domain
11Repeat in HS1/Cortactin
112Methylenetetrahydrofolate reductase
11ML domain
224ATP-grasp domain
112Thymidylate kinase
11Cytidylate kinase
213PA domain
112Transcriptional Coactivator p15 (PC4)
134Phospholipase/Carboxylesterase
11
11NAD(P) transhydrogenase beta subunit
22Carboxypeptidase activation peptide
11TrkA-N domain
11Iron hydrogenase small subunit
527FAT domain
6511FATC domain
415S1/P1 Nuclease
112Transcription initiation factor IIA, gamma subunit, helical domain
213Transcription initiation factor IID, 18kD subunit
11TFIIF, beta subunit HTH domain
112Ubiquinol-cytochrome C reductase complex 14kD subunit
123DHHA1 domain
112Cytochrome c oxidase subunit Va
112Signal recognition particle 14kD protein
112Transcription initiation factor IID, 31kD subunit
42