PFAM Domains • Rhizophagus irregularis B3 v1.0
Annotations/GenomesGloin1Lacbi2Morel2Mucci2Phybl2RhiirA1_1RhiirA4RhiirA5RhiirB3Rhimi1_1Tubme1TotalAnnotation Description
PFAMs
12,1048,65610,1609,5849,21611,38410,45010,42910,4878,6265,899106,995
14334157 transmembrane receptor (rhodopsin family)
5433157 transmembrane sweet-taste receptor of 3 GCPR
5139474448534852513845516ATPase family associated with various cellular activities (AAA)
4249945248624240453435543ABC transporter
44691254557465ATP synthase alpha/beta family, nucleotide-binding domain
31217EGF-like domain
1416191721181416171816186Elongation factor Tu GTP binding domain
112026373512121212398224Helix-loop-helix DNA-binding domain
111057141114137395Hsp20/alpha crystallin family
371514111234353737109251Hsp70 protein
268131412322825291311211KH domain
213Methyl-accepting chemotaxis protein (MCP) signalling domain
111111111110SH2 domain
2840394137313129304820374SH3 domain
1015111111101010101111120Actin
3195594237302929304517444Ankyrin repeat
89211210999997112ADP-ribosylation factor family
9243827331211910203196Eukaryotic aspartyl protease
4357754447454Cyclic nucleotide-binding domain
11Cystatin domain
1113Cytochrome b(C-terminal)/b6/petD
12126Cytochrome b/b6/petB
1131111112114Cytochrome c
711311910891363Double-stranded RNA binding motif
2918434335303231313317342EF hand
12111111112134Fe-4S binding domain
1111111111212Fibronectin type III domain
22127Globin
23131413733373330118222Glutathione S-transferase, C-terminal domain
2523332223229Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
91012272899109294156Homeodomain
55Kazal-type serine protease inhibitor domain
1111116Laminin EGF domain
3255534333238lactate/malate dehydrogenase, NAD binding domain
5771716555516694Myosin head (motor domain)
1918630415420120620919735261,276Cytochrome P450
1,009217202237220603519539582210934,431Protein kinase domain
81411181699991510128Pyridine nucleotide-disulphide oxidoreductase
2953416054302928305125430Ras family
177201518191414141712167Response regulator receiver domain
368527881109924415RNase H
88718888971039810210996621,002RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
17311Reverse transcriptase (RNA-dependent DNA polymerase)
314Serpin (serine protease inhibitor)
3153243443234Copper/zinc superoxide dismutase (SODC)
1322122221220Iron/manganese superoxide dismutases, alpha-hairpin domain
22522162426232522157207Subtilase family
72114472867762218183Sugar (and other) transporter
810191513109109168127Thioredoxin
21115Trefoil (P-type) domain
554256563243Trypsin
6668975668673Tubulin/FtsZ family, GTPase domain
1663232526237129von Willebrand factor type A domain
91631051402039810210811087411,148Zinc finger, C2H2 type
5766696455585660596036640Zinc finger, C3HC4 type (RING finger)
563418457075839481239588Zinc knuckle
3236533335238Protein-tyrosine phosphatase
4149524533574543422745479short chain dehydrogenase
2231302923252222212314262Zinc-binding dehydrogenase
54610564445457Thiolase, N-terminal domain
1523222122426Beta-ketoacyl synthase, N-terminal domain
47744444443492Fe-2S iron-sulfur cluster binding domain
33Papain family cysteine protease
1122211112115Enolase, C-terminal TIM barrel domain
5221311419Cytochrome C and Quinol oxidase polypeptide I
111115Cytochrome C oxidase subunit II, periplasmic domain
813109101088997101Glutamine amidotransferase class-I
1013121115101010101112124TCP-1/cpn60 chaperonin family
1113ATP synthase A chain
5755655655357Glutamine synthetase, catalytic domain
1121121111113Triosephosphate isomerase
2420353026252324212615269E1-E2 ATPase
212414142021232122149203Core histone H2A/H2B/H3/H4
437Bacterial regulatory helix-turn-helix protein, lysR family
232222316Copper binding proteins, plastocyanin/azurin family
3931132221734Alpha amylase, catalytic domain
56847554511262Phorbol esters/diacylglycerol binding domain (C1 domain)
84685109788881Bacterial transferase hexapeptide (six repeats)
103544961284469tRNA synthetases class I (I, L, M and V)
71415181810101011207140Cyclin, N-terminal domain
215303132221364Carboxylesterase family
2545542325282844155DNA polymerase family B
4465433334443ATP synthase subunit C
112Legume lectin domain
11Sigma-70 factor, region 1.2
2314222223124Peroxidase
2218142221135Beta-lactamase
6432446541342C-5 cytosine-specific DNA methylase
21111118NADH dehydrogenase
3033353734282732273321337Calcineurin-like phosphoesterase
2963433334343Cellulase (glycosyl hydrolase family 5)
7566666666666tRNA synthetases class II (D, K and N)
3641626354373740375234493Mitochondrial carrier protein
11recA bacterial DNA recombination protein
1112172020171111111810158Aminotransferase class I and II
1088131110101111107109Phosphoribosyl transferase domain
112Sigma-54 interaction domain
101314151491010111610132Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
1112121111113Phosphoglycerate kinase
2343322223228Ribosomal protein S4/S9 N-terminal domain
2234422224229Ribosomal protein S12/S23
314Bacterial regulatory helix-turn-helix proteins, AraC family
1112211111113Chaperonin 10 Kd subunit
2718312322252427272012256C2 domain
2924324448292928275318361PH domain
571528197677269136bZIP transcription factor
1215161512221312121210151Aldehyde dehydrogenase family
2073404647292625265256440Fungal Zn(2)-Cys(6) binuclear cluster domain
2923284139293030313719336Cytochrome b5-like Heme/Steroid binding domain
3342122221224Oxidoreductase molybdopterin binding domain
14813161314151516139146Oxidoreductase NAD-binding domain
1922222020201818202219220SNF2 family N-terminal domain
2324322223227Ribosomal protein S7p/S5e
5423252220515865512221412Ubiquitin-conjugating enzyme
6678875557569Isocitrate/isopropylmalate dehydrogenase
3235433334235Ribosomal Proteins L2, RNA binding domain
11Chitinase class I
2234422224128Hsp90 protein
2233632222229Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
1112211112114Dihydrofolate reductase
11111139Chitin recognition protein
39116143332247Cysteine-rich secretory protein family
1115411113120Ribosomal protein S3, C-terminal domain
112Cupin
2226Annexin
3823333328Eukaryotic-type carbonic anhydrase
8210Bacterial regulatory proteins, luxR family
33564333343402-oxoacid dehydrogenases acyltransferase (catalytic domain)
13423316Catalase
1143211112118Disintegrin
18101212225247128UDP-glucoronosyl and UDP-glucosyl transferase
4646654545352Aminotransferase class-III
2434422223230Ribosomal protein S19
3111132221118DNA gyrase B
3316333333435Thiamine pyrophosphate enzyme, central domain
3454453333441Lyase
3343343333234Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
13221211Ferritin-like domain
1122211112115Adenylate and Guanylate cyclase catalytic domain
1121111111112ATP synthase delta (OSCP) subunit
2111111111112Orotidine 5'-phosphate decarboxylase / HUMPS family
1211112131115Indole-3-glycerol phosphate synthase
22Aromatic amino acid lyase
1133321113120Pyruvate kinase, barrel domain
3010152820222422212810230Kinesin motor domain
3736333934363635353726384DnaJ domain
1514141414161615161414162Proteasome subunit
3772243331237Major intrinsic protein
1122211111114ATP synthase
22Glycosyl hydrolase family 1
21386222261353'5'-cyclic nucleotide phosphodiesterase
11114Protease inhibitor/seed storage/LTP family
1121111112113Profilin
3134522224230Ribosomal protein L22p/L17e
2233322223226Ribosomal protein L14p/L23e
7321312223727974732112501Ubiquitin family
5576466666461Cofilin/tropomyosin-type actin-binding protein
214332222432814-3-3 protein
2244322223329Alkaline phosphatase
1517Zinc carboxypeptidase
482417262052525350188368Aldo/keto reductase family
5114382320525857533316415Myb-like DNA-binding domain
557101055456466Forkhead domain
112Glycosyl hydrolases family 32 N-terminal domain
1111111111111Ribosomal protein L16p/L10e
2224422323228Ribosomal protein S14p/S29e
2696622225446FKBP-type peptidyl-prolyl cis-trans isomerase
1121211112114Glutathione peroxidase
2235322224229
5561513666611483Flavodoxin
11Tropomyosin
2151222221121Calreticulin family
347Common central domain of tyrosinase
761175107885579Aminotransferase class-V
11Gram-negative porin
1123111111114Ribonucleotide reductase, small chain
5680564847555353564735586DEAD/DEAH box helicase
86115918174908290847765935Helicase conserved C-terminal domain
3111132221118EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
2234322223227Ribosomal protein L23
2141122231120Pyridoxal-dependent decarboxylase, C-terminal sheet domain
113351111421Ribosomal protein L5
4454546443447Pyridoxal-dependent decarboxylase conserved domain
2321224221324Citrate synthase, C-terminal domain
6666666666565GHMP kinases N terminal domain
768111187878283Biotin carboxylase, N-terminal domain
1111111111212Tryptophan synthase alpha chain
77910987779989Pyridoxal-phosphate dependent enzyme
1113'Paired box' domain
1414172316211517192011187NUDIX domain
6547686666363pfkB family carbohydrate kinase
61297227Glycosyl hydrolases family 28
2224322223226Ribosomal protein L3
2234522224230Ribosomal protein L11, RNA binding domain
10781111101010101012109Histidine phosphatase superfamily (branch 1)
11Rubredoxin
11Chloramphenicol acetyltransferase
1111121111415Thymidylate synthase
11Lipoxygenase
44691254557465ATP synthase alpha/beta chain, C terminal domain
5513129777712690Calponin homology (CH) domain
11Bacterial dnaA protein
851012666666475Glutamine amidotransferases class-II
2223232223225Ribosomal protein S15
64222122122'Cold-shock' DNA-binding domain
345416Thaumatin family
1111111111111Fructose-1-6-bisphosphatase, N-terminal domain
2134232123124Ribonucleotide reductase, all-alpha domain
2234422223228Ribosomal protein S2
23410734339250SRF-type transcription factor (DNA-binding and dimerisation domain)
241224363522252327398275GATA zinc finger
623372119111210101816183Amino acid permease
11Bacterial regulatory proteins, crp family
68106666666672Prolyl oligopeptidase family
2125522224229Ribosomal protein L30p/L7e
68115255554460Histidine phosphatase superfamily (branch 2)
1111111111111Respiratory-chain NADH dehydrogenase, 30 Kd subunit
4866544445454Aconitase family (aconitate hydratase)
112Glycosyl hydrolase family 10
35313318Glycosyl hydrolases family 17
1234522223228Ribosomal protein S5, N-terminal domain
1226421115126Nucleoside diphosphate kinase
234651212329Tetraspanin family
22Galactoside-binding lectin
2223322123224Ribosomal protein S10p/S20e
15812222217171717203170Arrestin (or S-antigen), N-terminal domain
1111111111111Phosphoglucose isomerase
211211112113Carbohydrate phosphorylase
1112221112115SecY translocase
22Pili and flagellar-assembly chaperone, PapD N-terminal domain
1511111111115Respiratory-chain NADH dehydrogenase, 49 Kd subunit
2243422223228Ribosomal protein L6
3835443335344Polyprenyl synthetase
22611722228246Hexokinase
68117888887483Dynamin family
12111111110Biopterin-dependent aromatic amino acid hydroxylase
1212212111115Transcription factor TFIID (or TATA-binding protein, TBP)
5575555554455Rieske [2Fe-2S] domain
11Bacterial regulatory proteins, lacI family
22Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
43123316Proton-conducting membrane transporter
78101210989810495Biotin-requiring enzyme
1112221112115Phosphofructokinase
1232232222122Ribosomal protein S17
1213111112115Hydroxymethylglutaryl-coenzyme A reductase
2236622226336FGGY family of carbohydrate kinases, N-terminal domain
4764526Hemocyanin, copper containing domain
12115Sodium:dicarboxylate symporter family
448MerR family regulatory protein
9810141112111011126114Enoyl-CoA hydratase/isomerase
2234422224229Ribosomal protein S9/S16
3353333332233Transcription factor TFIIB repeat
5769465556563Cytidine and deoxycytidylate deaminase zinc-binding region
3131211111116Molybdopterin oxidoreductase
8211692214131512183151Chromo (CHRromatin Organisation MOdifier) domain
1411111111Phosphatidylinositol-specific phospholipase C, Y domain
1411111313Phosphatidylinositol-specific phospholipase C, X domain
3455542335645D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
1625421115230Malic enzyme, N-terminal domain
213PEP-utilising enzyme, mobile domain
156Bacterial regulatory proteins, gntR family
21132212221196-phosphogluconate dehydrogenase, C-terminal domain
813655131114113594Multicopper oxidase
1414S-layer homology domain
111115Granulin
128168713131313136122WW domain
2233343333130Ribosomal RNA adenine dimethylase
1422213541581621441461461461571001,876WD domain, G-beta repeat
11ATP synthase, Delta/Epsilon chain, long alpha-helix domain
7375475553556Heavy-metal-associated domain
3346543335443Adenylate kinase
2222222222323Phosphoglucomutase/phosphomannomutase, C-terminal domain
2133322223225Ribosomal protein S8
3234332213127Ribosomal protein S11
5791314454515485LIM domain
44Matrixin
5331455554242Regulator of chromosome condensation (RCC1) repeat
3234222224127Ribosomal protein S13/S18
211111119Tau and MAP protein, tubulin-binding repeat
44Fimbrial protein
12115NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
2222252332227chorismate binding enzyme
446873333735160s Acidic ribosomal protein
22CUB domain
5644444444447Prenyltransferase and squalene oxidase repeat
669911566610680Protein kinase C terminal domain
12111118Single-strand binding protein family
11Type II/IV secretion system protein
1111111121112S-adenosylmethionine synthetase, N-terminal domain
411016201419415452186291Bromodomain
3418Bacterial regulatory proteins, tetR family
981815161399111711136Acyl-CoA dehydrogenase, C-terminal domain
2316252621222724232214243Ubiquitin carboxyl-terminal hydrolase
1111111119Ribosomal protein L36
3314314Ribonuclease T2 family
6472014679714397HSF-type DNA-binding
3222252332127SRP54-type protein, GTPase domain
1112211111113Urease alpha-subunit, N-terminal domain
8745777774366Serine carboxypeptidase
881113108888128102Phosphatidylinositol 3- and 4-kinase
11DeoR C terminal sensor domain
1222211112116Transketolase, thiamine diphosphate binding domain
112111111111WHEP-TRS domain
3222243442230Inositol monophosphatase family
11Flagella basal body rod protein
45610544446456Glutaredoxin
1212111122216Isocitrate lyase family
2122222222221Serine hydroxymethyltransferase
211151112Iron-containing alcohol dehydrogenase
2224222223124Ribosomal protein L10
48910854446365KOW motif
1111111111111Ribosomal protein L34
112Ribosomal protein L33
4233244443235RF-1 domain
122132221218Sodium:solute symporter family
1111122221115Imidazoleglycerol-phosphate dehydratase
2111132221117DNA polymerase family A
1112111111112IMP dehydrogenase / GMP reductase domain
1133311112118Glucose-6-phosphate dehydrogenase, NAD binding domain
10911101110101010114106Protein phosphatase 2C
7336475556455Nucleotidyl transferase
273222222125Carbonic anhydrase
2122122222220Phosphoribulokinase / Uridine kinase family
415Transcriptional regulatory protein, C terminal
108118161099974101Fatty acid desaturase
5667655556662MutS domain V
1112111111112Delta-aminolevulinic acid dehydratase
1222331112321Arginase family
8686687776675MCM P-loop domain
2213422223124Squalene/phytoene synthase
33Bacterial extracellular solute-binding proteins, family 5 Middle
22Bacterial extracellular solute-binding proteins, family 3
1111171718101188159135FHA domain
1113NADH-ubiquinone/plastoquinone oxidoreductase chain 6
2229353736342325263021318AMP-binding enzyme
44981210565583115G-protein alpha subunit
13116132123142146146145198810HMG (high mobility group) box
112NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
11121118Cytochrome c oxidase subunit III
1041378121110989101His Kinase A (phospho-acceptor) domain
727101077778375Armadillo/beta-catenin-like repeat
5973393631847890833738648Tetratricopeptide repeat
372148784102547841391Ion transport protein
2111122221116DNA gyrase/topoisomerase IV, subunit A
11112Binding-protein-dependent transport system inner membrane component
11HlyD membrane-fusion protein of T1SS
22Periplasmic binding proteins and sugar binding domain of LacI family
812101066576121092BRCA1 C Terminus (BRCT) domain
11759886787581Glycosyl transferases group 1
11364585553257Glycosyl transferase family 2
81123101912127277SAM domain (Sterile alpha motif)
443143451130linker histone H1 and H5 family
211111111111Ribosomal protein L7/L12 C-terminal domain
22Pectate lyase
3115ribonuclease
1112221111114Urease, gamma subunit
3374363333341CoA-ligase
2558832224748Phosphopantetheine attachment site
1222222222221Formyl transferase
11Antenna complex alpha/beta subunit
691315148777157108Metallopeptidase family M24
5516623333687669622710511Leucine Rich Repeat
2620392523302930281619285alpha/beta hydrolase fold
5353354553344RNA polymerase Rpb2, domain 6
246EAL domain
107118101110111184