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PFAM Domains • Xylaria intraflava YMJ 725 v1.0
Annotations/GenomesAntav1Bisnum1DalEC12_1Entma1HypEC38_3Xylhyp1Xylint1TotalAnnotation Description
PFAMs
10,48610,3948,53210,2119,14911,4599,52669,757
1127 transmembrane receptor (rhodopsin family)
112267 transmembrane receptor (Secretin family)
88545350586246411ATPase family associated with various cellular activities (AAA)
49384338474534294ABC transporter
444444428ATP synthase alpha/beta family, nucleotide-binding domain
14151415141515102Elongation factor Tu GTP binding domain
138101110111174Helix-loop-helix DNA-binding domain
222121212Hsp20/alpha crystallin family
810711715967Hsp70 protein
878797753KH domain
1113SH2 domain
27122612251112125SH3 domain
9101099101067Actin
172256616893218418Ankyrin repeat
21312110PAN domain
788787752ADP-ribosylation factor family
22221722162118138Eukaryotic aspartyl protease
444444428Cyclic nucleotide-binding domain
112Cytochrome b(C-terminal)/b6/petD
11Cytochrome b/b6/petB
11111117Cytochrome c
11Double-stranded RNA binding motif
172193182263EF hand
11134Fe-4S binding domain
212121110Fibronectin type III domain
222232215Globin
2081515191113101Glutathione S-transferase, C-terminal domain
21111219Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
858585443Homeodomain
322222215lactate/malate dehydrogenase, NAD binding domain
444454429Myosin head (motor domain)
2381221181291601941251,086Cytochrome P450
181115113133125174128969Protein kinase domain
19131714141810105Pyridine nucleotide-disulphide oxidoreductase
28282527263027191Ras family
131113101214982Response regulator receiver domain
1252647440RNase H
60515957604954390RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
232323116Copper/zinc superoxide dismutase (SODC)
222222214Iron/manganese superoxide dismutases, alpha-hairpin domain
17252018212124146Subtilase family
59785953695945422Sugar (and other) transporter
1312111213121184Thioredoxin
421512Trypsin
564455534Tubulin/FtsZ family, GTPase domain
5144115von Willebrand factor type A domain
91236325702918319Zinc finger, C2H2 type
5474374556167Zinc finger, C3HC4 type (RING finger)
10311163640Zinc knuckle
222222214Protein-tyrosine phosphatase
2001151471171701611041,014short chain dehydrogenase
99536352717550463Zinc-binding dehydrogenase
665656640Thiolase, N-terminal domain
69342833375739297Beta-ketoacyl synthase, N-terminal domain
7485744392Fe-2S iron-sulfur cluster binding domain
11Papain family cysteine protease
11111117Enolase, C-terminal TIM barrel domain
112Cytochrome C and Quinol oxidase polypeptide I
119811810966Glutamine amidotransferase class-I
1010101010101070TCP-1/cpn60 chaperonin family
11ATP synthase A chain
444353528Glutamine synthetase, catalytic domain
222222214Triosephosphate isomerase
15211819182018129E1-E2 ATPase
1288888860Core histone H2A/H2B/H3/H4
11Copper binding proteins, plastocyanin/azurin family
674445232Alpha amylase, catalytic domain
222222214Phorbol esters/diacylglycerol binding domain (C1 domain)
777878751Bacterial transferase hexapeptide (six repeats)
453635531tRNA synthetases class I (I, L, M and V)
1076868853Cyclin, N-terminal domain
27181914182212130Carboxylesterase family
444544429DNA polymerase family B
645455433ATP synthase subunit C
555666639Peroxidase
18710151318889Beta-lactamase
443334324C-5 cytosine-specific DNA methylase
11NADH dehydrogenase
28232624252722175Calcineurin-like phosphoesterase
1015121712171093Cellulase (glycosyl hydrolase family 5)
878787752tRNA synthetases class II (D, K and N)
38373837393937265Mitochondrial carrier protein
1113recA bacterial DNA recombination protein
19181621152118128Aminotransferase class I and II
868574543Phosphoribosyl transferase domain
1010101010101070Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11215Ribosome inactivating protein
11111117Phosphoglycerate kinase
222222214Ribosomal protein S4/S9 N-terminal domain
222222214Ribosomal protein S12/S23
1111116Bacterial regulatory helix-turn-helix proteins, AraC family
11111117Chaperonin 10 Kd subunit
131112101210876C2 domain
188198189888PH domain
1117101510171494bZIP transcription factor
20201822182318139Aldehyde dehydrogenase family
2321561701501961901311,225Fungal Zn(2)-Cys(6) binuclear cluster domain
25242323242523167Cytochrome b5-like Heme/Steroid binding domain
424333322Oxidoreductase molybdopterin binding domain
17121814181712108Oxidoreductase NAD-binding domain
33272626313124198SNF2 family N-terminal domain
222212213Ribosomal protein S7p/S5e
23212122212219149Ubiquitin-conjugating enzyme
786767647Isocitrate/isopropylmalate dehydrogenase
222222214Ribosomal Proteins L2, RNA binding domain
11111117Hsp90 protein
222222214Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
11111117Dihydrofolate reductase
546153125Chitin recognition protein
223233217Cysteine-rich secretory protein family
11111117Ribosomal protein S3, C-terminal domain
444343325Cupin
223131113Annexin
1111116Eukaryotic-type carbonic anhydrase
211212110Chalcone and stilbene synthases, N-terminal domain
3333333212-oxoacid dehydrogenases acyltransferase (catalytic domain)
547385335Catalase
11111117Disintegrin
14213213UDP-glucoronosyl and UDP-glucosyl transferase
9117687654Aminotransferase class-III
232232216Ribosomal protein S19
11111117DNA gyrase B
744454533Thiamine pyrophosphate enzyme, central domain
453333425Lyase
222322215Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
112Sodium:neurotransmitter symporter family
11111117Adenylate and Guanylate cyclase catalytic domain
11111117ATP synthase delta (OSCP) subunit
11111117Orotidine 5'-phosphate decarboxylase / HUMPS family
11111117Indole-3-glycerol phosphate synthase
21221210Aromatic amino acid lyase
11111117Pyruvate kinase, barrel domain
1212121112131082Kinesin motor domain
31362628303029210DnaJ domain
1413141414141497Proteasome subunit
23422114Major intrinsic protein
11111117ATP synthase
11112219Glycosyl hydrolase family 1
111111173'5'-cyclic nucleotide phosphodiesterase
11111117Profilin
121212211Ribosomal protein L22p/L17e
232222215Ribosomal protein L14p/L23e
1110910109968Ubiquitin family
555555535Cofilin/tropomyosin-type actin-binding protein
23232331814-3-3 protein
525252122Alkaline phosphatase
655656437Zinc carboxypeptidase
39323427363322223Aldo/keto reductase family
157127176569Myb-like DNA-binding domain
844443431Forkhead domain
221117Glycosyl hydrolases family 32 N-terminal domain
121212211Ribosomal protein L16p/L10e
322222215Ribosomal protein S14p/S29e
433333322FKBP-type peptidyl-prolyl cis-trans isomerase
11111117Glutathione peroxidase
3227
857677545Flavodoxin
11111117Calreticulin family
149129814773Common central domain of tyrosinase
11911121011973Aminotransferase class-V
11111117Ribonucleotide reductase, small chain
41454544424746310DEAD/DEAH box helicase
93757870808075551Helicase conserved C-terminal domain
11111117EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
222222214Ribosomal protein L23
11111117Pyridoxal-dependent decarboxylase, C-terminal sheet domain
11211118Ribosomal protein L5
776768647Pyridoxal-dependent decarboxylase conserved domain
853436433Citrate synthase, C-terminal domain
555555535GHMP kinases N terminal domain
867666645Biotin carboxylase, N-terminal domain
11111117Tryptophan synthase alpha chain
1011111112111076Pyridoxal-phosphate dependent enzyme
24181917201618132NUDIX domain
766868546pfkB family carbohydrate kinase
763737437Glycosyl hydrolases family 28
3227Luciferase-like monooxygenase
222222214Ribosomal protein L3
222122213Ribosomal protein L11, RNA binding domain
18191617181612116Histidine phosphatase superfamily (branch 1)
11111117Thymidylate synthase
4413214Lipoxygenase
444444428ATP synthase alpha/beta chain, C terminal domain
554555433Calponin homology (CH) domain
524362325Glutamine amidotransferases class-II
221222213Ribosomal protein S15
21111118Thaumatin family
222222214Fructose-1-6-bisphosphatase, N-terminal domain
11111117Ribonucleotide reductase, all-alpha domain
221222213Ribosomal protein S2
312222214SRF-type transcription factor (DNA-binding and dimerisation domain)
666766643GATA zinc finger
34163312371512159Amino acid permease
665657338Prolyl oligopeptidase family
222122213Ribosomal protein L30p/L7e
6710695649Histidine phosphatase superfamily (branch 2)
11111117Respiratory-chain NADH dehydrogenase, 30 Kd subunit
645445432Aconitase family (aconitate hydratase)
323232116Glycosyl hydrolase family 10
424142118Glycosyl hydrolases family 17
222222214Ribosomal protein S5, N-terminal domain
11111117Nucleoside diphosphate kinase
11215Tetraspanin family
121212211Ribosomal protein S10p/S20e
333423321Arrestin (or S-antigen), N-terminal domain
11111117Phosphoglucose isomerase
11111117Carbohydrate phosphorylase
11111117SecY translocase
11111117Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222222214Ribosomal protein L6
1033534432Polyprenyl synthetase
445355430Hexokinase
11158129171688Dynamin family
31111119Transcription factor TFIID (or TATA-binding protein, TBP)
776765543Rieske [2Fe-2S] domain
1111116Phytochrome region
314Proton-conducting membrane transporter
989887857Biotin-requiring enzyme
11111117Phosphofructokinase
122221212Ribosomal protein S17
11111117Hydroxymethylglutaryl-coenzyme A reductase
333332320FGGY family of carbohydrate kinases, N-terminal domain
16881110121075Enoyl-CoA hydratase/isomerase
222222214Ribosomal protein S9/S16
222222214Transcription factor TFIIB repeat
898799757Cytidine and deoxycytidylate deaminase zinc-binding region
11111117Molybdopterin oxidoreductase
1269576752Chromo (CHRromatin Organisation MOdifier) domain
444444327Phosphatidylinositol-specific phospholipase C, Y domain
555656537Phosphatidylinositol-specific phospholipase C, X domain
8129679758D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
222222214Malic enzyme, N-terminal domain
2221211116-phosphogluconate dehydrogenase, C-terminal domain
14148129131080Multicopper oxidase
1111109109767WW domain
121122211Ribosomal RNA adenine dimethylase
1113Yeast PIR protein repeat
122106103106108108105758WD domain, G-beta repeat
454464330Heavy-metal-associated domain
573636434Adenylate kinase
222222214Phosphoglucomutase/phosphomannomutase, C-terminal domain
121223213Ribosomal protein S8
222222214Ribosomal protein S11
444444428LIM domain
112Matrixin
242645427Regulator of chromosome condensation (RCC1) repeat
222222214Ribosomal protein S13/S18
322423218chorismate binding enzyme
33333332160s Acidic ribosomal protein
444445429Prenyltransferase and squalene oxidase repeat
646565436Protein kinase C terminal domain
11111117Single-strand binding protein family
11111117S-adenosylmethionine synthetase, N-terminal domain
988988959Bromodomain
1296119131171Acyl-CoA dehydrogenase, C-terminal domain
1413141314131394Ubiquitin carboxyl-terminal hydrolase
11111117Ribosomal protein L36
422425524Ribonuclease T2 family
333332320HSF-type DNA-binding
222323317SRP54-type protein, GTPase domain
11111117Urease alpha-subunit, N-terminal domain
1079887554Serine carboxypeptidase
888888856Phosphatidylinositol 3- and 4-kinase
121212110Transketolase, thiamine diphosphate binding domain
1023325126Glycosyl hydrolases family 11
433434324Inositol monophosphatase family
444444428Glutaredoxin
525242222Isocitrate lyase family
222222214Serine hydroxymethyltransferase
224143117Iron-containing alcohol dehydrogenase
222222214Ribosomal protein L10
424443324KOW motif
111115Ribosomal protein L34
1113Ribosomal protein L33
333333321RF-1 domain
223242217Sodium:solute symporter family
11111117Imidazoleglycerol-phosphate dehydratase
11111117DNA polymerase family A
11111117IMP dehydrogenase / GMP reductase domain
11111117Glucose-6-phosphate dehydrogenase, NAD binding domain
766667644Protein phosphatase 2C
222222214Nucleotidyl transferase
633334325Carbonic anhydrase
11121219Phosphoribulokinase / Uridine kinase family
785557542Fatty acid desaturase
666666642MutS domain V
11121118Delta-aminolevulinic acid dehydratase
544344226Arginase family
666666642MCM P-loop domain
232323318Squalene/phytoene synthase
91010101091270FHA domain
11NADH-ubiquinone/plastoquinone oxidoreductase chain 6
79474351475951377AMP-binding enzyme
533444427G-protein alpha subunit
19881089870HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
107108910660His Kinase A (phospho-acceptor) domain
333333220Armadillo/beta-catenin-like repeat
32112613261213133Tetratricopeptide repeat
334243221Ion transport protein
11111117DNA gyrase/topoisomerase IV, subunit A
10796116655BRCA1 C Terminus (BRCT) domain
656364434Glycosyl transferases group 1
423242219Glycosyl transferase family 2
131112211SAM domain (Sterile alpha motif)
11111117linker histone H1 and H5 family
11111117Ribosomal protein L7/L12 C-terminal domain
751714530Pectate lyase
433233220ribonuclease
11111117Urease, gamma subunit
444444428CoA-ligase
60372042316644300Phosphopantetheine attachment site
333423321Formyl transferase
9109119121171Metallopeptidase family M24
133153162153Leucine Rich Repeat
5710381151158190alpha/beta hydrolase fold
333333321RNA polymerase Rpb2, domain 6
444434427PB1 domain
222222214Staphylococcal nuclease homologue
9129129121275Rab-GTPase-TBC domain
11111117Tudor domain
11111117WH1 domain
443533325Zinc finger, ZZ type
222122213HRDC domain
968696650CBS domain
222222214Ribosomal protein L13
222222214Ribosomal protein L4/L1 family
11111117Clp protease
445454430S1 RNA binding domain
11111117HIUase/Transthyretin family
535363328AhpC/TSA family
444444428tRNA synthetases class I (W and Y)
121116UvrD/REP helicase N-terminal domain
587958850Rhodanese-like domain
222222214Universal stress protein family
56284128403324250Acetyltransferase (GNAT) family
11111117SecE/Sec61-gamma subunits of protein translocation complex
11111117C-terminal regulatory domain of Threonine dehydratase
222222214AIR synthase related protein, N-terminal domain
878889755tRNA synthetase class II core domain (G, H, P, S and T)
11111117SpoU rRNA Methylase family
222222214Tetrapyrrole (Corrin/Porphyrin) Methylases
11111117Glycosyl transferase family, a/b domain
1113PDZ domain
543436429Class II Aldolase and Adducin N-terminal domain
444444428Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
555555535Fes/CIP4, and EFC/F-BAR homology domain
524252222IQ calmodulin-binding motif
222222214Phosphoinositide 3-kinase family, accessory domain (PIK domain)
535362226Phospholipase D Active site motif
151414420Regulator of G protein signaling domain
444444428GTPase-activator protein for Ras-like GTPase
443444427RasGEF domain
443444427RasGEF N-terminal motif
1099999863RhoGAP domain
666666642RhoGEF domain
333333624SPRY domain
333333321RNA polymerase Rpb1, domain 2
322323217Guanylate kinase
544344327Gelsolin repeat
646465435UBA/TS-N domain
1781715171415103PHD-finger
11111117GGL domain
666666642HECT-domain (ubiquitin-transferase)
212121110Helix-hairpin-helix motif
11111117MSP (Major sperm protein) domain
534354327Ribonuclease III domain
242324421Region in Clathrin and VPS
322333218RanBP1 domain
222222214PPIC-type PPIASE domain
334232219Zn-finger in Ran binding protein and others
1810178188685Zinc finger C-x8-C-x5-C-x3-H type (and similar)
423233219Poly(ADP-ribose) polymerase catalytic domain
11111117Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
5912669661713242F-box domain
11111117Elongation factor 1 gamma, conserved domain
434445428Calpain family cysteine protease
11222210Copper fist DNA binding domain
865857746CRAL/TRIO domain
1093125101362BTB/POZ domain
22213212Ricin-type beta-trefoil lectin domain
11111218Inhibitor of Apoptosis domain
333333321Voltage gated chloride channel
835264937Caspase domain
1871571512680GDSL-like Lipase/Acylhydrolase
11111117Poly-adenylate binding protein, unique domain
29192220232317153ABC transporter transmembrane region
677579546FAD binding domain
3410913111415106Condensation domain
11111117S-adenosyl-L-homocysteine hydrolase, NAD binding domain
11111117HAMP domain
222222214ribosomal L5P family C-terminus
555656638Insulinase (Peptidase family M16)
333333321Dehydrogenase E1 component
11111117Lumazine binding domain
566666641Elongation factor G C-terminus
546544533HMGL-like
444444428DnaJ central domain
322334219Starch binding domain
233323319Ribosomal protein L1p/L10e family
798778753Cation transporting ATPase, C-terminus
910119109967Cation transporter/ATPase, N-terminus
11121118dUTPase
645446433Aconitase C-terminal domain
444444529Amino acid kinase family
11111117N-(5'phosphoribosyl)anthranilate (PRA) isomerase
66322833396039297Acyl transferase domain
11111117Urease beta subunit
685656541Dihydrodipicolinate synthetase family
35173515381515170haloacid dehalogenase-like hydrolase
866979752Glycosyl hydrolases family 2
24131616172014120Glycosyl hydrolases family 18
11111117Proliferating cell nuclear antigen, N-terminal domain
112116Translation initiation factor IF-3, C-terminal domain
11111117Acylphosphatase
312122112Adenylosuccinate synthetase
12112119Asparaginase, N-terminal
313233217Peptidase S24-like
11111117Inorganic pyrophosphatase
14191315131616106Glycosyl hydrolases family 16
322323116Glycosyl hydrolases family 15
1079688250NADH:flavin oxidoreductase / NADH oxidase family
111111173-hydroxyacyl-CoA dehydrogenase, C-terminal domain
333323320Glycosyl hydrolase family 20, catalytic domain
564667741HhH-GPD superfamily base excision DNA repair protein
11111117AIR carboxylase
34302828343522211GMC oxidoreductase
332222216Asparagine synthase
226612717979Fungal cellulose binding domain
565656639Septin
11111117EF-1 guanine nucleotide exchange domain
11111117Homoserine dehydrogenase
383241122Flavin-binding monooxygenase-like
11LPXTG cell wall anchor motif
533334324tRNA synthetases class I (E and Q), catalytic domain
311121110tRNA synthetases class I (R)
444344528XPG N-terminal domain
12676106653Metallo-beta-lactamase superfamily
1111116F5/8 type C domain
432324220Choline/Carnitine o-acyltransferase
212221313Putative esterase
11111117Ferrochelatase
222222214Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
111214111Arginosuccinate synthase
11111117Electron transfer flavoprotein FAD-binding domain
333333321RNB domain
8117778351Dioxygenase
333333321CNH domain
222222214Diacylglycerol kinase catalytic domain
877777750Dual specificity phosphatase, catalytic domain
322232216P21-Rho-binding domain
1312131311131287PX domain
323232217Ras association (RalGDS/AF-6) domain
545454431UBX domain
444444529VHS domain
11111117Phosphoinositide 3-kinase C2
222223215DAHP synthetase I family
912119119970Carbon-nitrogen hydrolase
2111218N-acetyltransferase
11111117Prephenate dehydratase
444444428Syntaxin
545454431Pumilio-family RNA binding repeat
676777545Histone-like transcription factor (CBF/NF-Y) and archaeal histone
11111117Pterin binding enzyme
222222214ER lumen protein retaining receptor
322222215tRNA N6-adenosine threonylcarbamoyltransferase
11212119Histidinol dehydrogenase
444444428impB/mucB/samB family
1113
11111117Ribosomal L15
131414418Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
11111117Ribosomal L28 family
11111117Ribosomal L29 protein
11111117Ribosomal L39 protein
11111117Ribosomal S17
11111117Ribulose-phosphate 3 epimerase family
11111117Translationally controlled tumour protein
745555334Glycosyl hydrolase family 7
21115Ring hydroxylating alpha subunit (catalytic domain)
11111117RNA pseudouridylate synthase
444444428Histone deacetylase domain
646645334POT family
11111117PWWP domain
22211920202315140SET domain
117871210560Isochorismatase family
333333321Permease family
11111117Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
545555534XPG I-region
111115Acetokinase family
333332320DNA photolyase
22136519Nitroreductase family
8866115650Sulfatase
111111176,7-dimethyl-8-ribityllumazine synthase
111