PFAM Domains • Xylaria sp. FL0043 v1.0
Annotations/GenomesAntav1Bisnum1DalEC12_1Entma1HypEC38_3XylFL0043Xylhyp1TotalAnnotation Description
PFAMs
10,48610,3948,53210,2119,14911,45111,45971,682
1127 transmembrane receptor (rhodopsin family)
112267 transmembrane receptor (Secretin family)
88545350585562420ATPase family associated with various cellular activities (AAA)
49384338474445304ABC transporter
444444428ATP synthase alpha/beta family, nucleotide-binding domain
14151415141515102Elongation factor Tu GTP binding domain
138101110101173Helix-loop-helix DNA-binding domain
222122112Hsp20/alpha crystallin family
8107117101568Hsp70 protein
878796752KH domain
1113SH2 domain
27122612251311126SH3 domain
9101099101067Actin
172256616892632426Ankyrin repeat
21312110PAN domain
788788753ADP-ribosylation factor family
22221722162121141Eukaryotic aspartyl protease
444444428Cyclic nucleotide-binding domain
112Cytochrome b(C-terminal)/b6/petD
11Cytochrome b/b6/petB
11111117Cytochrome c
11Double-stranded RNA binding motif
172193183264EF hand
11134Fe-4S binding domain
212121110Fibronectin type III domain
222232215Globin
2081515191611104Glutathione S-transferase, C-terminal domain
211112210Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
858585544Homeodomain
322222215lactate/malate dehydrogenase, NAD binding domain
444454429Myosin head (motor domain)
2381221181291601801941,141Cytochrome P450
1811151131331251681741,009Protein kinase domain
19131714141618111Pyridine nucleotide-disulphide oxidoreductase
28282527262630190Ras family
1311131012121485Response regulator receiver domain
1252648744RNase H
60515957605249388RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
232323318Copper/zinc superoxide dismutase (SODC)
222222214Iron/manganese superoxide dismutases, alpha-hairpin domain
17252018211821140Subtilase family
59785953696559442Sugar (and other) transporter
1312111213131286Thioredoxin
4215315Trypsin
564455534Tubulin/FtsZ family, GTPase domain
514414von Willebrand factor type A domain
91236325703029331Zinc finger, C2H2 type
5474374555166Zinc finger, C3HC4 type (RING finger)
10311164338Zinc knuckle
222222214Protein-tyrosine phosphatase
2001151471171701791611,089short chain dehydrogenase
99536352717475487Zinc-binding dehydrogenase
665657641Thiolase, N-terminal domain
69342833374257300Beta-ketoacyl synthase, N-terminal domain
7485754402Fe-2S iron-sulfur cluster binding domain
11Papain family cysteine protease
11111117Enolase, C-terminal TIM barrel domain
112Cytochrome C and Quinol oxidase polypeptide I
119811891066Glutamine amidotransferase class-I
1010101010101070TCP-1/cpn60 chaperonin family
11ATP synthase A chain
444355328Glutamine synthetase, catalytic domain
222222214Triosephosphate isomerase
15211819181820129E1-E2 ATPase
1288888860Core histone H2A/H2B/H3/H4
11Copper binding proteins, plastocyanin/azurin family
674445535Alpha amylase, catalytic domain
222222214Phorbol esters/diacylglycerol binding domain (C1 domain)
777877851Bacterial transferase hexapeptide (six repeats)
453635531tRNA synthetases class I (I, L, M and V)
1076868853Cyclin, N-terminal domain
27181914182022138Carboxylesterase family
444544429DNA polymerase family B
645455534ATP synthase subunit C
555667640Peroxidase
187101513171898Beta-lactamase
443334425C-5 cytosine-specific DNA methylase
11NADH dehydrogenase
28232624252627179Calcineurin-like phosphoesterase
10151217121817101Cellulase (glycosyl hydrolase family 5)
878787752tRNA synthetases class II (D, K and N)
38373837393839266Mitochondrial carrier protein
11114recA bacterial DNA recombination protein
19181621151921129Aminotransferase class I and II
868575443Phosphoribosyl transferase domain
1010101010101070Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
1124Ribosome inactivating protein
11111117Phosphoglycerate kinase
222222214Ribosomal protein S4/S9 N-terminal domain
222222214Ribosomal protein S12/S23
1111116Bacterial regulatory helix-turn-helix proteins, AraC family
11111117Chaperonin 10 Kd subunit
131112101291077C2 domain
188198188988PH domain
1117101510181798bZIP transcription factor
20201822182123142Aldehyde dehydrogenase family
2321561701501961981901,292Fungal Zn(2)-Cys(6) binuclear cluster domain
25242323242325167Cytochrome b5-like Heme/Steroid binding domain
424333322Oxidoreductase molybdopterin binding domain
17121814181517111Oxidoreductase NAD-binding domain
33272626313231206SNF2 family N-terminal domain
222212213Ribosomal protein S7p/S5e
23212122212222152Ubiquitin-conjugating enzyme
786768749Isocitrate/isopropylmalate dehydrogenase
222222214Ribosomal Proteins L2, RNA binding domain
11111117Hsp90 protein
222222214Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
11111117Dihydrofolate reductase
546151325Chitin recognition protein
223232317Cysteine-rich secretory protein family
11111117Ribosomal protein S3, C-terminal domain
444343325Cupin
223131113Annexin
11111117Eukaryotic-type carbonic anhydrase
211212211Chalcone and stilbene synthases, N-terminal domain
3333333212-oxoacid dehydrogenases acyltransferase (catalytic domain)
547383535Catalase
11111117Disintegrin
14212313UDP-glucoronosyl and UDP-glucosyl transferase
9117687755Aminotransferase class-III
232232216Ribosomal protein S19
11111117DNA gyrase B
744455433Thiamine pyrophosphate enzyme, central domain
453334325Lyase
222322215Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
112Sodium:neurotransmitter symporter family
11111117Adenylate and Guanylate cyclase catalytic domain
11111117ATP synthase delta (OSCP) subunit
11111117Orotidine 5'-phosphate decarboxylase / HUMPS family
11111117Indole-3-glycerol phosphate synthase
21223111Aromatic amino acid lyase
11111117Pyruvate kinase, barrel domain
1212121112101382Kinesin motor domain
31362628302930210DnaJ domain
1413141414141497Proteasome subunit
23422316Major intrinsic protein
11111117ATP synthase
11112129Glycosyl hydrolase family 1
111111173'5'-cyclic nucleotide phosphodiesterase
11111117Profilin
121212211Ribosomal protein L22p/L17e
232222215Ribosomal protein L14p/L23e
1110910109968Ubiquitin family
555555535Cofilin/tropomyosin-type actin-binding protein
23232331814-3-3 protein
525252223Alkaline phosphatase
655656639Zinc carboxypeptidase
39323427363433235Aldo/keto reductase family
157127177671Myb-like DNA-binding domain
844443330Forkhead domain
2211118Glycosyl hydrolases family 32 N-terminal domain
121212211Ribosomal protein L16p/L10e
322222215Ribosomal protein S14p/S29e
433333322FKBP-type peptidyl-prolyl cis-trans isomerase
11111218Glutathione peroxidase
3227
857677747Flavodoxin
11111117Calreticulin family
1491298121478Common central domain of tyrosinase
119111210121176Aminotransferase class-V
11111117Ribonucleotide reductase, small chain
41454544424347307DEAD/DEAH box helicase
93757870807980555Helicase conserved C-terminal domain
11111117EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
222222214Ribosomal protein L23
11111117Pyridoxal-dependent decarboxylase, C-terminal sheet domain
11211118Ribosomal protein L5
776767848Pyridoxal-dependent decarboxylase conserved domain
853436635Citrate synthase, C-terminal domain
555555535GHMP kinases N terminal domain
867667646Biotin carboxylase, N-terminal domain
11111117Tryptophan synthase alpha chain
1011111112101176Pyridoxal-phosphate dependent enzyme
24181917202016134NUDIX domain
766868849pfkB family carbohydrate kinase
7637310743Glycosyl hydrolases family 28
3227Luciferase-like monooxygenase
222222214Ribosomal protein L3
222122213Ribosomal protein L11, RNA binding domain
18191617181616120Histidine phosphatase superfamily (branch 1)
11111117Thymidylate synthase
4414316Lipoxygenase
444444428ATP synthase alpha/beta chain, C terminal domain
554555534Calponin homology (CH) domain
524362224Glutamine amidotransferases class-II
221222213Ribosomal protein S15
21111118Thaumatin family
222222214Fructose-1-6-bisphosphatase, N-terminal domain
11111117Ribonucleotide reductase, all-alpha domain
221222213Ribosomal protein S2
312221213SRF-type transcription factor (DNA-binding and dimerisation domain)
666767644GATA zinc finger
34163312371315160Amino acid permease
665656741Prolyl oligopeptidase family
222121212Ribosomal protein L30p/L7e
6710696549Histidine phosphatase superfamily (branch 2)
11111117Respiratory-chain NADH dehydrogenase, 30 Kd subunit
645445533Aconitase family (aconitate hydratase)
323232217Glycosyl hydrolase family 10
424142219Glycosyl hydrolases family 17
222222214Ribosomal protein S5, N-terminal domain
11111117Nucleoside diphosphate kinase
11125Tetraspanin family
121212211Ribosomal protein S10p/S20e
333423321Arrestin (or S-antigen), N-terminal domain
11111218Phosphoglucose isomerase
11111117Carbohydrate phosphorylase
11111117SecY translocase
11111117Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222222214Ribosomal protein L6
1033535433Polyprenyl synthetase
445355531Hexokinase
11158129151787Dynamin family
31111119Transcription factor TFIID (or TATA-binding protein, TBP)
776767545Rieske [2Fe-2S] domain
1111116Phytochrome region
314Proton-conducting membrane transporter
989889758Biotin-requiring enzyme
11111117Phosphofructokinase
122221111Ribosomal protein S17
11111117Hydroxymethylglutaryl-coenzyme A reductase
333333220FGGY family of carbohydrate kinases, N-terminal domain
16881110131278Enoyl-CoA hydratase/isomerase
222222214Ribosomal protein S9/S16
222222214Transcription factor TFIIB repeat
898799959Cytidine and deoxycytidylate deaminase zinc-binding region
11111117Molybdopterin oxidoreductase
1269575650Chromo (CHRromatin Organisation MOdifier) domain
444444428Phosphatidylinositol-specific phospholipase C, Y domain
555656638Phosphatidylinositol-specific phospholipase C, X domain
81296710961D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
222222214Malic enzyme, N-terminal domain
2221221126-phosphogluconate dehydrogenase, C-terminal domain
14148129131383Multicopper oxidase
1111109109969WW domain
121122211Ribosomal RNA adenine dimethylase
1113Yeast PIR protein repeat
122106103106108108108761WD domain, G-beta repeat
454464431Heavy-metal-associated domain
573635635Adenylate kinase
222222214Phosphoglucomutase/phosphomannomutase, C-terminal domain
121223314Ribosomal protein S8
222222214Ribosomal protein S11
444444428LIM domain
1113Matrixin
242644527Regulator of chromosome condensation (RCC1) repeat
222222214Ribosomal protein S13/S18
322422318chorismate binding enzyme
33333332160s Acidic ribosomal protein
444444529Prenyltransferase and squalene oxidase repeat
646564536Protein kinase C terminal domain
11111117Single-strand binding protein family
11111117S-adenosylmethionine synthetase, N-terminal domain
988989859Bromodomain
1296119121372Acyl-CoA dehydrogenase, C-terminal domain
1413141314131394Ubiquitin carboxyl-terminal hydrolase
11111117Ribosomal protein L36
422425524Ribonuclease T2 family
333333220HSF-type DNA-binding
222323317SRP54-type protein, GTPase domain
11111117Urease alpha-subunit, N-terminal domain
1079886755Serine carboxypeptidase
888888856Phosphatidylinositol 3- and 4-kinase
121212211Transketolase, thiamine diphosphate binding domain
1023323528Glycosyl hydrolases family 11
433434425Inositol monophosphatase family
444444428Glutaredoxin
525242222Isocitrate lyase family
222222214Serine hydroxymethyltransferase
224141317Iron-containing alcohol dehydrogenase
222222214Ribosomal protein L10
424445326KOW motif
111115Ribosomal protein L34
1113Ribosomal protein L33
333333321RF-1 domain
223242217Sodium:solute symporter family
11111117Imidazoleglycerol-phosphate dehydratase
11111117DNA polymerase family A
11111117IMP dehydrogenase / GMP reductase domain
11111117Glucose-6-phosphate dehydrogenase, NAD binding domain
766667745Protein phosphatase 2C
222222214Nucleotidyl transferase
633334426Carbonic anhydrase
111213211Phosphoribulokinase / Uridine kinase family
785556743Fatty acid desaturase
666666642MutS domain V
11121118Delta-aminolevulinic acid dehydratase
544344428Arginase family
666666642MCM P-loop domain
232323318Squalene/phytoene synthase
91010101011969FHA domain
11NADH-ubiquinone/plastoquinone oxidoreductase chain 6
79474351475859384AMP-binding enzyme
533445428G-protein alpha subunit
19881088970HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
107108991063His Kinase A (phospho-acceptor) domain
333333321Armadillo/beta-catenin-like repeat
32112613261112131Tetratricopeptide repeat
334243322Ion transport protein
11111117DNA gyrase/topoisomerase IV, subunit A
10796116655BRCA1 C Terminus (BRCT) domain
656364434Glycosyl transferases group 1
423242219Glycosyl transferase family 2
131111210SAM domain (Sterile alpha motif)
11111117linker histone H1 and H5 family
11111117Ribosomal protein L7/L12 C-terminal domain
751717432Pectate lyase
433233321ribonuclease
11111117Urease, gamma subunit
444444428CoA-ligase
60372042315466310Phosphopantetheine attachment site
333423321Formyl transferase
9109119131273Metallopeptidase family M24
133153162254Leucine Rich Repeat
57103811511415196alpha/beta hydrolase fold
333333321RNA polymerase Rpb2, domain 6
444434427PB1 domain
222222214Staphylococcal nuclease homologue
9129129121275Rab-GTPase-TBC domain
11111117Tudor domain
11111117WH1 domain
443533325Zinc finger, ZZ type
222122213HRDC domain
968696650CBS domain
222222214Ribosomal protein L13
222222214Ribosomal protein L4/L1 family
11111117Clp protease
445454430S1 RNA binding domain
11111117HIUase/Transthyretin family
535364329AhpC/TSA family
444444428tRNA synthetases class I (W and Y)
121116UvrD/REP helicase N-terminal domain
587958850Rhodanese-like domain
222222214Universal stress protein family
56284128403733263Acetyltransferase (GNAT) family
11111117SecE/Sec61-gamma subunits of protein translocation complex
11111117C-terminal regulatory domain of Threonine dehydratase
222222214AIR synthase related protein, N-terminal domain
878888956tRNA synthetase class II core domain (G, H, P, S and T)
11111117SpoU rRNA Methylase family
222222214Tetrapyrrole (Corrin/Porphyrin) Methylases
11111117Glycosyl transferase family, a/b domain
1113PDZ domain
543436631Class II Aldolase and Adducin N-terminal domain
444444428Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
555555535Fes/CIP4, and EFC/F-BAR homology domain
524252222IQ calmodulin-binding motif
222222214Phosphoinositide 3-kinase family, accessory domain (PIK domain)
535362226Phospholipase D Active site motif
151414420Regulator of G protein signaling domain
444444428GTPase-activator protein for Ras-like GTPase
443444427RasGEF domain
443444427RasGEF N-terminal motif
10999911966RhoGAP domain
666666642RhoGEF domain
333335323SPRY domain
333333321RNA polymerase Rpb1, domain 2
322324319Guanylate kinase
544344428Gelsolin repeat
646464535UBA/TS-N domain
1781715171414102PHD-finger
11111117GGL domain
666666642HECT-domain (ubiquitin-transferase)
212121110Helix-hairpin-helix motif
11111117MSP (Major sperm protein) domain
534354428Ribonuclease III domain
242324421Region in Clathrin and VPS
322333319RanBP1 domain
222222214PPIC-type PPIASE domain
334232219Zn-finger in Ran binding protein and others
1810178187886Zinc finger C-x8-C-x5-C-x3-H type (and similar)
423233320Poly(ADP-ribose) polymerase catalytic domain
11111117Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
5912669661217241F-box domain
11111117Elongation factor 1 gamma, conserved domain
434444528Calpain family cysteine protease
112222212Copper fist DNA binding domain
865858747CRAL/TRIO domain
1093125111060BTB/POZ domain
222131213Ricin-type beta-trefoil lectin domain
11111128Inhibitor of Apoptosis domain
333333321Voltage gated chloride channel
835264432Caspase domain
18715715111285GDSL-like Lipase/Acylhydrolase
11111117Poly-adenylate binding protein, unique domain
29192220232523161ABC transporter transmembrane region
677577948FAD binding domain
3410913111214103Condensation domain
11111117S-adenosyl-L-homocysteine hydrolase, NAD binding domain
11111117HAMP domain
222222214ribosomal L5P family C-terminus
555656638Insulinase (Peptidase family M16)
333333321Dehydrogenase E1 component
11111117Lumazine binding domain
566666641Elongation factor G C-terminus
546544432HMGL-like
444444428DnaJ central domain
11Sulfotransferase domain
322333420Starch binding domain
233323319Ribosomal protein L1p/L10e family
798777853Cation transporting ATPase, C-terminus
910119108966Cation transporter/ATPase, N-terminus
11121118dUTPase
645446635Aconitase C-terminal domain
444444428Amino acid kinase family
11111117N-(5'phosphoribosyl)anthranilate (PRA) isomerase
66322833394260300Acyl transferase domain
11111117Urease beta subunit
685657643Dihydrodipicolinate synthetase family
35173515381515170haloacid dehalogenase-like hydrolase
866978953Glycosyl hydrolases family 2
24131616171620122Glycosyl hydrolases family 18
11111117Proliferating cell nuclear antigen, N-terminal domain
112116Translation initiation factor IF-3, C-terminal domain
1111116Acylphosphatase
312121212Adenylosuccinate synthetase
12112119Asparaginase, N-terminal
313233318Peptidase S24-like
11111117Inorganic pyrophosphatase
14191315131716107Glycosyl hydrolases family 16
322323318Glycosyl hydrolases family 15
1079688856NADH:flavin oxidoreductase / NADH oxidase family
111111173-hydroxyacyl-CoA dehydrogenase, C-terminal domain
333323320Glycosyl hydrolase family 20, catalytic domain
564667741HhH-GPD superfamily base excision DNA repair protein
11111117AIR carboxylase
34302828343835227GMC oxidoreductase
332222216Asparagine synthase
2266127201790Fungal cellulose binding domain
565656639Septin
11111117EF-1 guanine nucleotide exchange domain
11111117Homoserine dehydrogenase
383244125Flavin-binding monooxygenase-like
11LPXTG cell wall anchor motif
533333424tRNA synthetases class I (E and Q), catalytic domain
311121110tRNA synthetases class I (R)
444344427XPG N-terminal domain
12676106653Metallo-beta-lactamase superfamily
1111116F5/8 type C domain
432323421Choline/Carnitine o-acyltransferase
212222112Putative esterase
11111117Ferrochelatase
222222214Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
111212412Arginosuccinate synthase
11111117Electron transfer flavoprotein FAD-binding domain
333333321RNB domain
81177711859Dioxygenase
333333321CNH domain
222222214Diacylglycerol kinase catalytic domain
877777750Dual specificity phosphatase, catalytic domain
322233217P21-Rho-binding domain
1312131311131388PX domain
323232217Ras association (RalGDS/AF-6) domain
545454431UBX domain
444444428VHS domain
11111117Phosphoinositide 3-kinase C2
222222315DAHP synthetase I family
912119119970Carbon-nitrogen hydrolase
2111128N-acetyltransferase
11111117Prephenate dehydratase
444443427Syntaxin
545454431Pumilio-family RNA binding repeat
676777747Histone-like transcription factor (CBF/NF-Y) and archaeal histone
11111117Pterin binding enzyme
222222214ER lumen protein retaining receptor
322222215Glycoprotease family
11212119Histidinol dehydrogenase
444444428impB/mucB/samB family
1113
11111117Ribosomal L15
131414418Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
11111117Ribosomal L28 family
11111117Ribosomal L29 protein
11111117Ribosomal L39 protein
11111117Ribosomal S17
11111117Ribulose-phosphate 3 epimerase family
11111117Translationally controlled tumour protein
745555536Glycosyl hydrolase family 7
21115Ring hydroxylating alpha subunit (catalytic domain)
11111117RNA pseudouridylate synthase
444444428Histone deacetylase domain
646646537POT family
11111117PWWP domain
22211920201823143SET domain
117871291064Isochorismatase family
333333321Permease family
11111117Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
545555534XPG I-region
11114Acetokinase family
333334221DNA photolyase
2213