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PFAM Domains • Schizosaccharomyces octosporus yFS286
Annotations/GenomesPneji1Proin1Saico1Schja1Schoc1Schpo1Tapde1_1TotalAnnotation Description
PFAMs
3,3835,5316,1174,9415,0615,2834,22634,542
11313634333327205ATPase family associated with various cellular activities (AAA)
12263216191920144ABC transporter
744444229ATP synthase alpha/beta family, nucleotide-binding domain
11EGF-like domain
15131416161611101Elongation factor Tu GTP binding domain
298434535Helix-loop-helix DNA-binding domain
33382221Hsp20/alpha crystallin family
877988754Hsp70 protein
1389768354KH domain
1111116SH2 domain
11202019212113125SH3 domain
111010111010870Actin
16222114141414115Ankyrin repeat
112PAN domain
775444637ADP-ribosylation factor family
1913542640Eukaryotic aspartyl protease
44333320Cyclic nucleotide-binding domain
11Cytochrome b(C-terminal)/b6/petD
11Cytochrome b/b6/petB
11111117Cytochrome c
222422115Double-stranded RNA binding motif
14172214141412107EF hand
3211111104Fe-4S binding domain
12211310Fibronectin type III domain
2114Globin
2146586546Glutathione S-transferase, C-terminal domain
11722114Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
276243529Homeodomain
222112212lactate/malate dehydrogenase, NAD binding domain
11Low-density lipoprotein receptor repeat class B
443555329Myosin head (motor domain)
21114222942Cytochrome P450
73899610710310664638Protein kinase domain
2911766950Pyridine nucleotide-disulphide oxidoreductase
18212117171717128Ras family
116235551267Response regulator receiver domain
11111117RNase H
63565866726742424RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
11Retroviral aspartyl protease
214117Reverse transcriptase (RNA-dependent DNA polymerase)
1111127Copper/zinc superoxide dismutase (SODC)
12111219Iron/manganese superoxide dismutases, alpha-hairpin domain
263444225Subtilase family
119371091118105Sugar (and other) transporter
888899959Thioredoxin
111115Trypsin
233444222Tubulin/FtsZ family, GTPase domain
22von Willebrand factor type A domain
14302921161814142Zinc finger, C2H2 type
17383834383816219Zinc finger, C3HC4 type (RING finger)
575847642Zinc knuckle
122333216Protein-tyrosine phosphatase
5454916192133188short chain dehydrogenase
223213131217109Zinc-binding dehydrogenase
256111521Thiolase, N-terminal domain
122222112Beta-ketoacyl synthase, N-terminal domain
4452224232Fe-2S iron-sulfur cluster binding domain
11322110Enolase, C-terminal TIM barrel domain
123Cytochrome C and Quinol oxidase polypeptide I
112Cytochrome C oxidase subunit II, periplasmic domain
598788550Glutamine amidotransferase class-I
9109101010765TCP-1/cpn60 chaperonin family
122211110Glutamine synthetase, catalytic domain
11111117Triosephosphate isomerase
91091099864E1-E2 ATPase
5611121312766Core histone H2A/H2B/H3/H4
185101212553Alpha amylase, catalytic domain
22544421Phorbol esters/diacylglycerol binding domain (C1 domain)
555556435Bacterial transferase hexapeptide (six repeats)
543444428tRNA synthetases class I (I, L, M and V)
68810911557Cyclin, N-terminal domain
18101727Carboxylesterase family
355444328DNA polymerase family B
233333219ATP synthase subunit C
13228Peroxidase
22Beta-lactamase
311117C-5 cytosine-specific DNA methylase
11NADH dehydrogenase
13181721202220131Calcineurin-like phosphoesterase
67222524Cellulase (glycosyl hydrolase family 5)
777666645tRNA synthetases class II (D, K and N)
17363825232331193Mitochondrial carrier protein
11recA bacterial DNA recombination protein
613131111111075Aminotransferase class I and II
588988753Phosphoribosyl transferase domain
8111110891067Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
2111117Phosphoglycerate kinase
22333114Ribosomal protein S4/S9 N-terminal domain
222533219Ribosomal protein S12/S23
11111117Chaperonin 10 Kd subunit
51210131212973C2 domain
817111514171193PH domain
65544731bZIP transcription factor
814577647Aldehyde dehydrogenase family
2464624253117191Fungal Zn(2)-Cys(6) binuclear cluster domain
518186961274Cytochrome b5-like Heme/Steroid binding domain
1315Oxidoreductase molybdopterin binding domain
41310788858Oxidoreductase NAD-binding domain
17202221202016136SNF2 family N-terminal domain
222333217Ribosomal protein S7p/S5e
14161814131412101Ubiquitin-conjugating enzyme
256355430Isocitrate/isopropylmalate dehydrogenase
322344119Ribosomal Proteins L2, RNA binding domain
2111117Hsp90 protein
122222112Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
21111118Dihydrofolate reductase
22Chitin recognition protein
53412Cysteine-rich secretory protein family
11111128Ribosomal protein S3, C-terminal domain
11Cupin
1113Annexin
112Eukaryotic-type carbonic anhydrase
3232222162-oxoacid dehydrogenases acyltransferase (catalytic domain)
13121210Catalase
111115Disintegrin
45467531Aminotransferase class-III
112333215Ribosomal protein S19
11111117DNA gyrase B
33546122Thiamine pyrophosphate enzyme, central domain
233345323Lyase
122122212Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
1111116Adenylate and Guanylate cyclase catalytic domain
11111117ATP synthase delta (OSCP) subunit
21111118Orotidine 5'-phosphate decarboxylase / HUMPS family
1111116Indole-3-glycerol phosphate synthase
33Aromatic amino acid lyase
11111117Pyruvate kinase, barrel domain
788999757Kinesin motor domain
21272624242419165DnaJ domain
1414141414141094Proteasome subunit
881522Major intrinsic protein
1111116ATP synthase
112Glycosyl hydrolase family 1
11133'5'-cyclic nucleotide phosphodiesterase
21111118Profilin
221333216Ribosomal protein L22p/L17e
223333218Ribosomal protein L14p/L23e
61011141313269Ubiquitin family
145444224Cofilin/tropomyosin-type actin-binding protein
12222211214-3-3 protein
241119Alkaline phosphatase
1111116Zinc carboxypeptidase
1141881015773Aldo/keto reductase family
1313171213131091Myb-like DNA-binding domain
443444427Forkhead domain
224112113Glycosyl hydrolases family 32 N-terminal domain
11111117Ribosomal protein L16p/L10e
12222110Ribosomal protein S14p/S29e
133333218FKBP-type peptidyl-prolyl cis-trans isomerase
11111117Glutathione peroxidase
322222114
265555230Flavodoxin
311222112Calreticulin family
266335530Aminotransferase class-V
1111116Ribonucleotide reductase, small chain
31354035383632247DEAD/DEAH box helicase
60677070686958462Helicase conserved C-terminal domain
11111117EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
222333217Ribosomal protein L23
1111116Pyridoxal-dependent decarboxylase, C-terminal sheet domain
122332114Ribosomal protein L5
441413Pyridoxal-dependent decarboxylase conserved domain
122111210Citrate synthase, C-terminal domain
245555430GHMP kinases N terminal domain
366444330Biotin carboxylase, N-terminal domain
1111116Tryptophan synthase alpha chain
169557740Pyridoxal-phosphate dependent enzyme
311118881059NUDIX domain
265554330pfkB family carbohydrate kinase
617Glycosyl hydrolases family 28
222333217Ribosomal protein L3
222333116Ribosomal protein L11, RNA binding domain
213109109962Histidine phosphatase superfamily (branch 1)
11111117Thymidylate synthase
744444229ATP synthase alpha/beta chain, C terminal domain
647456436Calponin homology (CH) domain
254554530Glutamine amidotransferases class-II
222322114Ribosomal protein S15
3126Thaumatin family
111115Fructose-1-6-bisphosphatase, N-terminal domain
11111117Ribonucleotide reductase, all-alpha domain
322443220Ribosomal protein S2
143223318SRF-type transcription factor (DNA-binding and dimerisation domain)
2910655744GATA zinc finger
1161627162210108Amino acid permease
232233217Prolyl oligopeptidase family
111333214Ribosomal protein L30p/L7e
165445833Histidine phosphatase superfamily (branch 2)
1113Respiratory-chain NADH dehydrogenase, 30 Kd subunit
144444324Aconitase family (aconitate hydratase)
11Glycosyl hydrolase family 10
44111213Glycosyl hydrolases family 17
22222212Ribosomal protein S5, N-terminal domain
1111116Nucleoside diphosphate kinase
122222213Ribosomal protein S10p/S20e
255344225Arrestin (or S-antigen), N-terminal domain
1111116Phosphoglucose isomerase
1113Carbohydrate phosphorylase
11111117SecY translocase
11114Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222333217Ribosomal protein L6
233333219Polyprenyl synthetase
133222316Hexokinase
233333219Dynamin family
1111116Transcription factor TFIID (or TATA-binding protein, TBP)
135222419Rieske [2Fe-2S] domain
11Phytochrome region
22Proton-conducting membrane transporter
466555536Biotin-requiring enzyme
11111117Phosphofructokinase
212333115Ribosomal protein S17
21111118Hydroxymethylglutaryl-coenzyme A reductase
134111213FGGY family of carbohydrate kinases, N-terminal domain
1107111829Enoyl-CoA hydratase/isomerase
322333117Ribosomal protein S9/S16
222222113Transcription factor TFIIB repeat
155566432Cytidine and deoxycytidylate deaminase zinc-binding region
21216Molybdopterin oxidoreductase
1751077542Chromo (CHRromatin Organisation MOdifier) domain
11111117Phosphatidylinositol-specific phospholipase C, Y domain
11111128Phosphatidylinositol-specific phospholipase C, X domain
44235523D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
121217Malic enzyme, N-terminal domain
21211186-phosphogluconate dehydrogenase, C-terminal domain
55111114Multicopper oxidase
856777646WW domain
222222214Ribosomal RNA adenine dimethylase
134Yeast PIR protein repeat
9510411511010410883719WD domain, G-beta repeat
133222215Heavy-metal-associated domain
233222317Adenylate kinase
213233216Phosphoglucomutase/phosphomannomutase, C-terminal domain
112333215Ribosomal protein S8
12322111Ribosomal protein S11
434544226LIM domain
11Matrixin
212221111Regulator of chromosome condensation (RCC1) repeat
222333116Ribosomal protein S13/S18
122222213chorismate binding enzyme
23256712660s Acidic ribosomal protein
644544330Prenyltransferase and squalene oxidase repeat
576999247Protein kinase C terminal domain
111115Single-strand binding protein family
1111116S-adenosylmethionine synthetase, N-terminal domain
5899109555Bromodomain
88420Acyl-CoA dehydrogenase, C-terminal domain
1012171515151094Ubiquitin carboxyl-terminal hydrolase
111115Ribosomal protein L36
112Ribonuclease T2 family
134322217HSF-type DNA-binding
322222114SRP54-type protein, GTPase domain
111115Urease alpha-subunit, N-terminal domain
374333427Serine carboxypeptidase
77891010455Phosphatidylinositol 3- and 4-kinase
11111117Transketolase, thiamine diphosphate binding domain
1113WHEP-TRS domain
24211212Inositol monophosphatase family
255555532Glutaredoxin
23128Isocitrate lyase family
112222111Serine hydroxymethyltransferase
23322214Iron-containing alcohol dehydrogenase
211222111Ribosomal protein L10
457879444KOW motif
11114Ribosomal protein L34
122222112RF-1 domain
2311310Sodium:solute symporter family
1111116Imidazoleglycerol-phosphate dehydratase
11111117DNA polymerase family A
2111117IMP dehydrogenase / GMP reductase domain
11132311Glucose-6-phosphate dehydrogenase, NAD binding domain
256666334Protein phosphatase 2C
434444326Nucleotidyl transferase
1111116Carbonic anhydrase
2211118Phosphoribulokinase / Uridine kinase family
265322727Fatty acid desaturase
366444431MutS domain V
1121117Delta-aminolevulinic acid dehydratase
22145115Arginase family
666666642MCM P-loop domain
2211129Squalene/phytoene synthase
51010667852FHA domain
321189991382AMP-binding enzyme
233222317G-protein alpha subunit
676858545HMG (high mobility group) box
112Cytochrome c oxidase subunit III
1218333847His Kinase A (phospho-acceptor) domain
244445124Armadillo/beta-catenin-like repeat
18231917182017132Tetratricopeptide repeat
23111311Ion transport protein
11111117DNA gyrase/topoisomerase IV, subunit A
1091291210971BRCA1 C Terminus (BRCT) domain
446898544Glycosyl transferases group 1
332222216Glycosyl transferase family 2
2114SAM domain (Sterile alpha motif)
1225linker histone H1 and H5 family
11111117Ribosomal protein L7/L12 C-terminal domain
11ribonuclease
1111116Urease, gamma subunit
246233323CoA-ligase
136433424Phosphopantetheine attachment site
133222215Formyl transferase
599778853Metallopeptidase family M24
111312810101074Leucine Rich Repeat
4242711111114102alpha/beta hydrolase fold
233333320RNA polymerase Rpb2, domain 6
34333420PB1 domain
112222212Staphylococcal nuclease homologue
7109111112666Rab-GTPase-TBC domain
111115Tudor domain
1111116WH1 domain
232123215Zinc finger, ZZ type
112222212HRDC domain
5610576443CBS domain
22234417Ribosomal protein L13
122233215Ribosomal protein L4/L1 family
1113Clp protease
445555432S1 RNA binding domain
111115HIUase/Transthyretin family
224323117AhpC/TSA family
344444427tRNA synthetases class I (W and Y)
111222110UvrD/REP helicase N-terminal domain
236467533Rhodanese-like domain
222222113Universal stress protein family
6171818141712102Acetyltransferase (GNAT) family
1111116SecE/Sec61-gamma subunits of protein translocation complex
1111116C-terminal regulatory domain of Threonine dehydratase
222222214AIR synthase related protein, N-terminal domain
979888655tRNA synthetase class II core domain (G, H, P, S and T)
1121117SpoU rRNA Methylase family
222222214Tetrapyrrole (Corrin/Porphyrin) Methylases
1111116Glycosyl transferase family, a/b domain
1113PDZ domain
3222413Class II Aldolase and Adducin N-terminal domain
234455427Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
135467228Fes/CIP4, and EFC/F-BAR homology domain
544545431IQ calmodulin-binding motif
222222214Phosphoinositide 3-kinase family, accessory domain (PIK domain)
223222215Phospholipase D Active site motif
11121118Regulator of G protein signaling domain
234222318GTPase-activator protein for Ras-like GTPase
325222319RasGEF domain
323222418RasGEF N-terminal motif
61081099658RhoGAP domain
557777543RhoGEF domain
333333321SPRY domain
433333221RNA polymerase Rpb1, domain 2
11111117Guanylate kinase
244444325Gelsolin repeat
79771112457UBA/TS-N domain
1314181616178102PHD-finger
112GGL domain
656877443HECT-domain (ubiquitin-transferase)
2223110Helix-hairpin-helix motif
1111228MSP (Major sperm protein) domain
235333221Ribonuclease III domain
322322115Region in Clathrin and VPS
233333118RanBP1 domain
222211212PPIC-type PPIASE domain
133211213Zn-finger in Ran binding protein and others
10121613109878Zinc finger C-x8-C-x5-C-x3-H type (and similar)
11B-box zinc finger
112Poly(ADP-ribose) polymerase catalytic domain
112228Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
2282811101215106F-box domain
21111118Elongation factor 1 gamma, conserved domain
123Calpain family cysteine protease
112127Copper fist DNA binding domain
355555230CRAL/TRIO domain
33423318BTB/POZ domain
11111117Inhibitor of Apoptosis domain
52222215Voltage gated chloride channel
1111116Caspase domain
3111118GDSL-like Lipase/Acylhydrolase
11121118Poly-adenylate binding protein, unique domain
21111118POLO box duplicated region
71112799964ABC transporter transmembrane region
613221Integrase core domain
165555431FAD binding domain
2311119Condensation domain
11111117S-adenosyl-L-homocysteine hydrolase, NAD binding domain
112HAMP domain
222333116ribosomal L5P family C-terminus
755566438Insulinase (Peptidase family M16)
322222215Dehydrogenase E1 component
11111117Lumazine binding domain
567777544Elongation factor G C-terminus
44333219HMGL-like
544444328DnaJ central domain
322333218Ribosomal protein L1p/L10e family
454333527Cation transporting ATPase, C-terminus
565656538Cation transporter/ATPase, N-terminus
111115dUTPase
144444324Aconitase C-terminal domain
33333217Amino acid kinase family
31111119N-(5'phosphoribosyl)anthranilate (PRA) isomerase
12222110Acyl transferase domain
1111116Urease beta subunit
1113Dihydrodipicolinate synthetase family
13232117151618123haloacid dehalogenase-like hydrolase
123Glycosyl hydrolases family 2
35111112Glycosyl hydrolases family 18
11111117Proliferating cell nuclear antigen, N-terminal domain
112Acylphosphatase
11111117Adenylosuccinate synthetase
111418Asparaginase, N-terminal
234333220Peptidase S24-like
111222110Inorganic pyrophosphatase
99111425Glycosyl hydrolases family 16
22222111Glycosyl hydrolases family 15
46173223NADH:flavin oxidoreductase / NADH oxidase family
12143-hydroxyacyl-CoA dehydrogenase, C-terminal domain
112Glycosyl hydrolase family 20, catalytic domain
346544531HhH-GPD superfamily base excision DNA repair protein
11111117AIR carboxylase
3216GMC oxidoreductase
22222212Asparagine synthase
112Fungal cellulose binding domain
545777237Septin
11111117EF-1 guanine nucleotide exchange domain
1111116Homoserine dehydrogenase
11114Flavin-binding monooxygenase-like
11LPXTG cell wall anchor motif
334333322tRNA synthetases class I (E and Q), catalytic domain
11111117tRNA synthetases class I (R)
654455534XPG N-terminal domain
5510546742Metallo-beta-lactamase superfamily
2226Choline/Carnitine o-acyltransferase
1113Putative esterase
11111117Ferrochelatase
122333216Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
1111116Arginosuccinate synthase
111115Electron transfer flavoprotein FAD-binding domain
143555427RNB domain
213Dioxygenase
134334220CNH domain
211116Diacylglycerol kinase catalytic domain
266433428Dual specificity phosphatase, catalytic domain
322322216P21-Rho-binding domain
811131114141081PX domain
123222113Ras association (RalGDS/AF-6) domain
635534228UBX domain
344555430VHS domain
11111117Phosphoinositide 3-kinase C2
22222212DAHP synthetase I family
268455535Carbon-nitrogen hydrolase
1111116Prephenate dehydratase
233333118Syntaxin
455888644Pumilio-family RNA binding repeat
656666540Histone-like transcription factor (CBF/NF-Y) and archaeal histone
1111116Pterin binding enzyme
21211119ER lumen protein retaining receptor
121222111tRNA N6-adenosine threonylcarbamoyltransferase
1111116Histidinol dehydrogenase
44333421impB/mucB/samB family
11112219
111232111Ribosomal L15
112228Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
111115Ribosomal prokaryotic L21 protein
1111116Ribosomal L28 family
1111116Ribosomal L29 protein
11114Ribosomal L39 protein
111222110Ribosomal S17
11111117Ribulose-phosphate 3 epimerase family
1111116Translationally controlled tumour protein
22Alanine racemase, C-terminal domain
122111210RNA pseudouridylate synthase
756333431Histone deacetylase domain
11211118POT family
111333113PWWP domain
79151112131077SET domain
35111112Isochorismatase family
2222210Permease family
211222111Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
355554431XPG I-region
1113Acetokinase family
336DNA photolyase
11114Cation-independent mannose-6-phosphate receptor repeat
111115Cytosol aminopeptidase family, catalytic domain
1111127Sulfatase
11111166,7-dimethyl-8-ribityllumazine synthase
11111117Ribosomal protein S16
122111210Acyl CoA binding protein
544444429Cullin family
1113Elongation factor TS
13622216FAD binding domain
11O-methyltransferase domain
3511313EamA-like transporter family
212229
688888551ThiF family
111233112Ribosomal family S4e
2211129Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
22233113Ammonium Transporter Family
34334421Sulfate permease family
1111116MATH domain
1211128Dehydratase family
22111119Transaldolase/Fructose-6-phosphate aldolase
23222213Mechanosensitive ion channel
11111117GTP cyclohydrolase II
11111163,4-dihydroxy-2-butanone 4-phosphate synthase
334333322Adaptor complexes medium subunit family
557666540Exonuclease
211122110Dipeptidyl peptidase IV (DPP IV) N-terminal region
24129Glycosyl hydrolase family 3 N terminal domain
1111116Ribosomal protein L44
11111117DNA-dependent RNA polymerase
1113FAD binding domain in molybdopterin dehydrogenase
11Peptidase S7, Flavivirus NS3 serine protease
1111116Glycosyl transferase family 4
1311118HCO3- transporter family
132333318Nucleosome assembly protein (NAP)
444333324Synaptobrevin
11111117GMP synthase C terminal domain
11LAGLIDADG endonuclease
23113111Adenosine/AMP deaminase
355233425Oxidoreductase FAD-binding domain
2222210Histidine biosynthesis protein
233655125Glycosyltransferase family 20
1113UDP-glucose/GDP-mannose dehydrogenase family, central domain
122222112Carbamoyl-phosphate synthase small chain, CPSase domain
211116PAS fold
2327Probable molybdopterin binding domain
344444225Sec1 family
222222214GDP dissociation inhibitor
365244428Sodium/hydrogen exchanger family