PFAM Domains • Armillaria mellea DSM 3731
Annotations/GenomesArmga1Armme1_1Armost1Gymlu1Monpe1_1Ompol1TotalAnnotation Description
PFAMs
10,4008,64810,01510,6745,1716,93951,847
1127 transmembrane receptor (rhodopsin family)
534248423342260ATPase family associated with various cellular activities (AAA)
656566602644326ABC transporter
44442422ATP synthase alpha/beta family, nucleotide-binding domain
224EGF-like domain
1515151791586Elongation factor Tu GTP binding domain
1313141591276Helix-loop-helix DNA-binding domain
791075745Hsp20/alpha crystallin family
981099853Hsp70 protein
87883741KH domain
111115SH2 domain
312931361527169SH3 domain
1113111171265Actin
7033491111327303Ankyrin repeat
11PAN domain
86884741ADP-ribosylation factor family
32293039724161Eukaryotic aspartyl protease
54432321Cyclic nucleotide-binding domain
1111116Cytochrome c
1467112545Double-stranded RNA binding motif
20202217916104EF hand
222322134Fe-4S binding domain
111115Fibronectin type III domain
10891391059Glutathione S-transferase, C-terminal domain
1111116Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
11Hemopexin
13911911053Homeodomain
33332317lactate/malate dehydrogenase, NAD binding domain
45679435Myosin head (motor domain)
3242462742632091181,434Cytochrome P450
221154226186991231,009Protein kinase domain
17171633715105Pyridine nucleotide-disulphide oxidoreductase
252225281824142Ras family
1211121151162Response regulator receiver domain
2362151258RNase H
777170752968390RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
27139471Reverse transcriptase (RNA-dependent DNA polymerase)
44412Copper/zinc superoxide dismutase (SODC)
22322314Iron/manganese superoxide dismutases, alpha-hairpin domain
1061257545Subtilase family
474343546233282Sugar (and other) transporter
1712161210976Thioredoxin
55565531Tubulin/FtsZ family, GTPase domain
53614230von Willebrand factor type A domain
11256951011127402Zinc finger, C2H2 type
994698741039366Zinc finger, C3HC4 type (RING finger)
3619580472314395Zinc knuckle
22262216Protein-tyrosine phosphatase
1491221431525163680short chain dehydrogenase
424143591645246Zinc-binding dehydrogenase
44455426Thiolase, N-terminal domain
10610106547Beta-ketoacyl synthase, N-terminal domain
323313152Fe-2S iron-sulfur cluster binding domain
1111116Enolase, C-terminal TIM barrel domain
88776844Glutamine amidotransferase class-I
10111012101063TCP-1/cpn60 chaperonin family
55432423Glutamine synthetase, catalytic domain
1111116Triosephosphate isomerase
1312131212870E1-E2 ATPase
211619271016109Core histone H2A/H2B/H3/H4
446216Copper binding proteins, plastocyanin/azurin family
121212123960Alpha amylase, catalytic domain
63752528Phorbol esters/diacylglycerol binding domain (C1 domain)
63452525Bacterial transferase hexapeptide (six repeats)
55747331tRNA synthetases class I (I, L, M and V)
106101521356Cyclin, N-terminal domain
373342484820228Carboxylesterase family
44442422DNA polymerase family B
33331316ATP synthase subunit C
111012138761Peroxidase
31355219Beta-lactamase
55774331C-5 cytosine-specific DNA methylase
302530301025150Calcineurin-like phosphoesterase
1111121671067Cellulase (glycosyl hydrolase family 5)
65588638tRNA synthetases class II (D, K and N)
443241404335235Mitochondrial carrier protein
11recA bacterial DNA recombination protein
201420231316106Aminotransferase class I and II
76774637Phosphoribosyl transferase domain
15121520101183Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
1112117Phosphoglycerate kinase
2132210Ribosomal protein S4/S9 N-terminal domain
22322213Ribosomal protein S12/S23
2221119Chaperonin 10 Kd subunit
1714171781689C2 domain
2217202041699PH domain
87782941bZIP transcription factor
282023372315146Aldehyde dehydrogenase family
12448122108730439Fungal Zn(2)-Cys(6) binuclear cluster domain
252324221018122Cytochrome b5-like Heme/Steroid binding domain
32222314Oxidoreductase molybdopterin binding domain
108101231053Oxidoreductase NAD-binding domain
272326291924148SNF2 family N-terminal domain
22222111Ribosomal protein S7p/S5e
242123251321127Ubiquitin-conjugating enzyme
55573631Isocitrate/isopropylmalate dehydrogenase
22222212Ribosomal Proteins L2, RNA binding domain
22224214Hsp90 protein
3233213Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
11114Dihydrofolate reductase
11Chitin recognition protein
66645431Cysteine-rich secretory protein family
1111116Ribosomal protein S3, C-terminal domain
66532224Cupin
11161212Annexin
134Eukaryotic-type carbonic anhydrase
333353202-oxoacid dehydrogenases acyltransferase (catalytic domain)
45955331Catalase
111115Disintegrin
121113523UDP-glucoronosyl and UDP-glucosyl transferase
66653531Aminotransferase class-III
2222210Ribosomal protein S19
1112117DNA gyrase B
33341317Thiamine pyrophosphate enzyme, central domain
45441422Lyase
24222214Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
111216Adenylate and Guanylate cyclase catalytic domain
111115ATP synthase delta (OSCP) subunit
1111116Orotidine 5'-phosphate decarboxylase / HUMPS family
32222213Indole-3-glycerol phosphate synthase
33333217Aromatic amino acid lyase
1111116Pyruvate kinase, barrel domain
111210118961Kinesin motor domain
312933311326163DnaJ domain
1414141491479Proteasome subunit
56564329Major intrinsic protein
1112117ATP synthase
14101037347Glycosyl hydrolase family 1
11111163'5'-cyclic nucleotide phosphodiesterase
1111116Profilin
21221210Ribosomal protein L22p/L17e
31221211Ribosomal protein L14p/L23e
2515241541497Ubiquitin family
56552528Cofilin/tropomyosin-type actin-binding protein
2222121114-3-3 protein
34324117Alkaline phosphatase
1111116Zinc carboxypeptidase
615057653743313Aldo/keto reductase family
1310132261781Myb-like DNA-binding domain
96984339Forkhead domain
11Glycosyl hydrolases family 32 N-terminal domain
111115Ribosomal protein L16p/L10e
222129Ribosomal protein S14p/S29e
5554423FKBP-type peptidyl-prolyl cis-trans isomerase
211116Glutathione peroxidase
111115
981072743Flavodoxin
11Protamine P1
1111217Calreticulin family
121113133557Common central domain of tyrosinase
979125648Aminotransferase class-V
152752233Ribonucleotide reductase, small chain
554651522749280DEAD/DEAH box helicase
948694983483489Helicase conserved C-terminal domain
1113Fructose-bisphosphate aldolase class-I
111115EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
2222210Ribosomal protein L23
111339Pyridoxal-dependent decarboxylase, C-terminal sheet domain
1111116Ribosomal protein L5
55553427Pyridoxal-dependent decarboxylase conserved domain
33334319Citrate synthase, C-terminal domain
54562527GHMP kinases N terminal domain
67663634Biotin carboxylase, N-terminal domain
1112117Tryptophan synthase alpha chain
878910749Pyridoxal-phosphate dependent enzyme
1510151861276NUDIX domain
54551323pfkB family carbohydrate kinase
182116194886Glycosyl hydrolases family 28
22222212Ribosomal protein L3
2222210Ribosomal protein L11, RNA binding domain
12512116652Histidine phosphatase superfamily (branch 1)
1111116Thymidylate synthase
22Lipoxygenase
44442422ATP synthase alpha/beta chain, C terminal domain
53453525Calponin homology (CH) domain
65568535Glutamine amidotransferases class-II
23221212Ribosomal protein S15
554117335Thaumatin family
1111116Fructose-1-6-bisphosphatase, N-terminal domain
1121128Ribonucleotide reductase, all-alpha domain
22222212Ribosomal protein S2
22231212SRF-type transcription factor (DNA-binding and dimerisation domain)
108112251066GATA zinc finger
322132342220161Amino acid permease
1315Bacterial regulatory proteins, crp family
65563530Prolyl oligopeptidase family
1111217Ribosomal protein L30p/L7e
999145854Histidine phosphatase superfamily (branch 2)
1111116Respiratory-chain NADH dehydrogenase, 30 Kd subunit
55553528Aconitase family (aconitate hydratase)
66659436Glycosyl hydrolase family 10
2124211Glycosyl hydrolases family 17
22221211Ribosomal protein S5, N-terminal domain
22221211Nucleoside diphosphate kinase
212319Tetraspanin family
111227Ribosomal protein S10p/S20e
1122129Arrestin (or S-antigen), N-terminal domain
1111217Phosphoglucose isomerase
12114110Carbohydrate phosphorylase
1111116SecY translocase
111115Respiratory-chain NADH dehydrogenase, 49 Kd subunit
22222212Ribosomal protein L6
181211105763Polyprenyl synthetase
22223213Hexokinase
1261071440Dynamin family
112116Transcription factor TFIID (or TATA-binding protein, TBP)
32332316Rieske [2Fe-2S] domain
11Phytochrome region
98996849Biotin-requiring enzyme
1111318Phosphofructokinase
2122119Ribosomal protein S17
1111116Hydroxymethylglutaryl-coenzyme A reductase
44442422FGGY family of carbohydrate kinases, N-terminal domain
11Sodium:dicarboxylate symporter family
101091431056Enoyl-CoA hydratase/isomerase
22221211Ribosomal protein S9/S16
22323214Transcription factor TFIIB repeat
83981332Cytidine and deoxycytidylate deaminase zinc-binding region
1111116Molybdopterin oxidoreductase
1165810297130Chromo (CHRromatin Organisation MOdifier) domain
3333214Phosphatidylinositol-specific phospholipase C, Y domain
33332317Phosphatidylinositol-specific phospholipase C, X domain
65662732D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
3333214Malic enzyme, N-terminal domain
11121176-phosphogluconate dehydrogenase, C-terminal domain
26262519188122Multicopper oxidase
131014122859WW domain
2122119Ribosomal RNA adenine dimethylase
13010212040670114942WD domain, G-beta repeat
43441218Heavy-metal-associated domain
33331316Adenylate kinase
111115Phosphoglucomutase/phosphomannomutase, C-terminal domain
1111116Ribosomal protein S8
22221211Ribosomal protein S11
62562526LIM domain
11Matrixin
44331520Regulator of chromosome condensation (RCC1) repeat
22222212Ribosomal protein S13/S18
22222313chorismate binding enzyme
3334131760s Acidic ribosomal protein
43446526Prenyltransferase and squalene oxidase repeat
66672835Protein kinase C terminal domain
111115Single-strand binding protein family
1111116S-adenosylmethionine synthetase, N-terminal domain
1011101161058Bromodomain
11Bacterial regulatory proteins, tetR family
777114743Acyl-CoA dehydrogenase, C-terminal domain
1816151541583Ubiquitin carboxyl-terminal hydrolase
11Ribosomal protein L36
22231111Ribonuclease T2 family
55553427HSF-type DNA-binding
22221211SRP54-type protein, GTPase domain
1111116Urease alpha-subunit, N-terminal domain
16181515211297Serine carboxypeptidase
112Apoptosis regulator proteins, Bcl-2 family
88884844Phosphatidylinositol 3- and 4-kinase
45435324Transketolase, thiamine diphosphate binding domain
1214210Glycosyl hydrolases family 11
11114WHEP-TRS domain
64533324Inositol monophosphatase family
5555525Glutaredoxin
33354321Isocitrate lyase family
23241113Serine hydroxymethyltransferase
74632325Iron-containing alcohol dehydrogenase
212319Ribosomal protein L10
55552527KOW motif
1113Ribosomal protein L34
212229RF-1 domain
3142313Sodium:solute symporter family
11114Imidazoleglycerol-phosphate dehydratase
111115DNA polymerase family A
1111217IMP dehydrogenase / GMP reductase domain
11151312Glucose-6-phosphate dehydrogenase, NAD binding domain
9811135955Protein phosphatase 2C
32331214Nucleotidyl transferase
67742228Carbonic anhydrase
111115Phosphoribulokinase / Uridine kinase family
181520991384Fatty acid desaturase
66676637MutS domain V
1111116Delta-aminolevulinic acid dehydratase
55554529Arginase family
66666636MCM P-loop domain
1111217Squalene/phytoene synthase
129121441162FHA domain
715669773236341AMP-binding enzyme
221921251314114G-protein alpha subunit
30262628414128HMG (high mobility group) box
86882840His Kinase A (phospho-acceptor) domain
434122227Armadillo/beta-catenin-like repeat
413232641825212Tetratricopeptide repeat
33432318Ion transport protein
1114119DNA gyrase/topoisomerase IV, subunit A
11Binding-protein-dependent transport system inner membrane component
1181196853BRCA1 C Terminus (BRCT) domain
981083644Glycosyl transferases group 1
5446322Glycosyl transferase family 2
212229SAM domain (Sterile alpha motif)
4444319linker histone H1 and H5 family
1111116Ribosomal protein L7/L12 C-terminal domain
55537126Pectate lyase
41431114ribonuclease
1111116Urease, gamma subunit
33343319CoA-ligase
1813151661482Phosphopantetheine attachment site
32321112Formyl transferase
199141081070Metallopeptidase family M24
148142061577Leucine Rich Repeat
745977542337324alpha/beta hydrolase fold
33333318RNA polymerase Rpb2, domain 6
55543426PB1 domain
22221211Staphylococcal nuclease homologue
10710132951Rab-GTPase-TBC domain
1111116Tudor domain
11215WH1 domain
63541322Zinc finger, ZZ type
112116HRDC domain
1371084850CBS domain
22222212Ribosomal protein L13
22221211Ribosomal protein L4/L1 family
11114Clp protease
4233315S1 RNA binding domain
111115HIUase/Transthyretin family
888104644AhpC/TSA family
45444425tRNA synthetases class I (W and Y)
111115UvrD/REP helicase N-terminal domain
53361422Rhodanese-like domain
22221211Universal stress protein family
31223140920153Acetyltransferase (GNAT) family
11114SecE/Sec61-gamma subunits of protein translocation complex
111115C-terminal regulatory domain of Threonine dehydratase
22221211AIR synthase related protein, N-terminal domain
67662633tRNA synthetase class II core domain (G, H, P, S and T)
112Phage integrase family
52441319Tetrapyrrole (Corrin/Porphyrin) Methylases
1112117Glycosyl transferase family, a/b domain
22263217Class II Aldolase and Adducin N-terminal domain
43442421Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
66664533Fes/CIP4, and EFC/F-BAR homology domain
34431318IQ calmodulin-binding motif
22221211Phosphoinositide 3-kinase family, accessory domain (PIK domain)
33441318Phospholipase D Active site motif
1111116Regulator of G protein signaling domain
43462423GTPase-activator protein for Ras-like GTPase
77763636RasGEF domain
87872739RasGEF N-terminal motif
1513151171172RhoGAP domain
1714171941384RhoGEF domain
44443322SPRY domain
33352319RNA polymerase Rpb1, domain 2
111115Guanylate kinase
44441421Gelsolin repeat
89894947UBA/TS-N domain
1812201731484PHD-finger
1113GGL domain
55564530HECT-domain (ubiquitin-transferase)
33411113Helix-hairpin-helix motif
22BRCA2 repeat
111115MSP (Major sperm protein) domain
966103539Ribonuclease III domain
22221211Region in Clathrin and VPS
33331215RanBP1 domain
2222210PPIC-type PPIASE domain
3234315Zn-finger in Ran binding protein and others
41243428719153Zinc finger C-x8-C-x5-C-x3-H type (and similar)
111115B-box zinc finger
63554326Poly(ADP-ribose) polymerase catalytic domain
2122119Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
234972451852647834F-box domain
1111116Elongation factor 1 gamma, conserved domain
41225216Calpain family cysteine protease
2237Copper fist DNA binding domain
757377871CRAL/TRIO domain
231928101788BTB/POZ domain
44442321Ricin-type beta-trefoil lectin domain
111115Inhibitor of Apoptosis domain
42333318Voltage gated chloride channel
177951182026418Caspase domain
12811113550GDSL-like Lipase/Acylhydrolase
2222210Poly-adenylate binding protein, unique domain
111115POLO box duplicated region
242124301521135ABC transporter transmembrane region
659417122Integrase core domain
64642527FAD binding domain
11342314Condensation domain
1111116S-adenosyl-L-homocysteine hydrolase, NAD binding domain
3332112HAMP domain
22221211ribosomal L5P family C-terminus
55562528Insulinase (Peptidase family M16)
44442422Dehydrogenase E1 component
1111217Lumazine binding domain
77783739Elongation factor G C-terminus
55554529HMGL-like
42441419DnaJ central domain
53542322Starch binding domain
24221213Ribosomal protein L1p/L10e family
86657436Cation transporting ATPase, C-terminus
66773534Cation transporter/ATPase, N-terminus
111115dUTPase
65552528Aconitase C-terminal domain
32333317Amino acid kinase family
111115N-(5'phosphoribosyl)anthranilate (PRA) isomerase
1388127553Acyl transferase domain
111115Urease beta subunit
3333315Dihydrodipicolinate synthetase family
383336361524182haloacid dehalogenase-like hydrolase
22233315Glycosyl hydrolases family 2
1212121315973Glycosyl hydrolases family 18
111115Proliferating cell nuclear antigen, N-terminal domain
1211218Adenylosuccinate synthetase
111115Asparaginase, N-terminal
32332114Peptidase S24-like
111115Inorganic pyrophosphatase
867102639Glycosyl hydrolases family 16
45443323Glycosyl hydrolases family 15
353734271916168NADH:flavin oxidoreductase / NADH oxidase family
1112163-hydroxyacyl-CoA dehydrogenase, C-terminal domain
22242315Glycosyl hydrolase family 20, catalytic domain
64551425HhH-GPD superfamily base excision DNA repair protein
1111116AIR carboxylase
725859715423337GMC oxidoreductase
21225214Asparagine synthase
1210103231582Fungal cellulose binding domain
76774637Septin
111115EF-1 guanine nucleotide exchange domain
1111116Homoserine dehydrogenase
44671325Flavin-binding monooxygenase-like
43431318tRNA synthetases class I (E and Q), catalytic domain
1131118tRNA synthetases class I (R)
65652529XPG N-terminal domain
171316185978Metallo-beta-lactamase superfamily
11114F5/8 type C domain
56545429Choline/Carnitine o-acyltransferase
1111116Putative esterase
1111217Glycosyl hydrolase family 9
1111116Ferrochelatase
22221211Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
1111217Arginosuccinate synthase
11Autoinducer synthase
1111116Electron transfer flavoprotein FAD-binding domain
33343319RNB domain
22222152577Dioxygenase
434111427CNH domain
212229Diacylglycerol kinase catalytic domain
1511141281171Dual specificity phosphatase, catalytic domain
211116MyTH4 domain
54531321P21-Rho-binding domain
1611151451374PX domain
3338320Ras association (RalGDS/AF-6) domain
44441320UBX domain
54552526VHS domain
1111116Phosphoinositide 3-kinase C2
37322219DAHP synthetase I family
87856741Carbon-nitrogen hydrolase
221229N-acetyltransferase
11114Prephenate dehydratase
66651428Syntaxin
55553629Pumilio-family RNA binding repeat
53772529Histone-like transcription factor (CBF/NF-Y) and archaeal histone
1111116Pterin binding enzyme
31131110ER lumen protein retaining receptor
32222213Glycoprotease family
1111116Histidinol dehydrogenase
34334320impB/mucB/samB family
1111116
1111116Ribosomal L15
1211117Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
111115Ribosomal prokaryotic L21 protein
111115Ribosomal L28 family
1111116Ribosomal L29 protein
22116Ribosomal L39 protein
1111116Ribosomal S17
111115Ribulose-phosphate 3 epimerase family
111115Translationally controlled tumour protein
44375427Glycosyl hydrolase family 7
2322211RNA pseudouridylate synthase
1591466656Histone deacetylase domain
53325220POT family
1233211PWWP domain
27142723910110SET domain
32383524Isochorismatase family
33421215Permease family
111115Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
22101556563XPG I-region
22217Acetokinase family
1111228DNA photolyase
11114Cation-independent mannose-6-phosphate receptor repeat
314Nitroreductase family
1112117Cytosol aminopeptidase family, catalytic domain
1135111Sulfatase
11111166,7-dimethyl-8-ribityllumazine synthase
111115Ribosomal protein S16
33333318Acyl CoA binding protein
98976544Cullin family
1111116Elongation factor TS
1071296549FAD binding domain
131112254873O-methyltransferase domain
104931431EamA-like transporter family
52223216
77776842ThiF family
1111116Ribosomal family S4e
1111116Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
55534325Ammonium Transporter Family
64534325Sulfate permease family
111115MATH domain
22221211Dehydratase family
3335317Transaldolase/Fructose-6-phosphate aldolase
4443318Mechanosensitive ion channel
1111116GTP cyclohydrolase II
11111163,4-dihydroxy-2-butanone 4-phosphate synthase
44443423Adaptor complexes medium subunit family
86874740Exonuclease
2211118Dipeptidyl peptidase IV (DPP IV) N-terminal region
12131215151077Glycosyl hydrolase family 3 N terminal domain
121116Ribosomal protein L44
11Sodium:sulfate symporter transmembrane region
1111217DNA-dependent RNA polymerase
111115Glycosyl transferase family 4
111115HCO3- transporter family
32221313Nucleosome assembly protein (NAP)
55554428Synaptobrevin
1111116GMP synthase C terminal domain
54433322Adenosine/AMP deaminase
33362421Oxidoreductase FAD-binding domain
157961240Thioesterase domain
21221210Histidine biosynthesis protein
33435321Glycosyltransferase family 20
1111116UDP-glucose/GDP-mannose dehydrogenase family, central domain
2222210Carbamoyl-phosphate synthase small chain, CPSase domain
112PAS fold
22222212Probable molybdopterin binding domain
44444424Sec1 family
22224214GDP dissociation inhibitor
87878745Sodium/hydrogen exchanger family
22221211RNA polymerase Rpb3/RpoA insert domain
63333321Initiation factor 2 subunit family
112PQQ enzyme repeat
22221211Electron transfer flavoprotein domain
1113Uricase
1111217Ribosomal S3Ae family
111115Ribosomal L27 protein
1111116GTP1/OBG
22245318Gamma-glutamyltranspeptidase
1113Ribosomal L40e family
111115GrpE
9663327TatD related DNase
1111116Inhibitor of apoptosis-promoting Bax1
1111217Eukaryotic DNA topoisomerase I, catalytic core
11NusB family
3543318Dynamin central region
21232106-O-methylguanine DNA methyltransferase, DNA binding domain
33225217Carboxyl transferase domain
1491295554UbiA prenyltransferase family
31353318Endoribonuclease L-PSP
1113Phosphorylase superfamily
111115Mannose-6-phosphate isomerase
12131296658Cys/Met metabolism PLP-dependent enzyme
556119440Glycosyl hydrolases family 31
111115NADH ubiquinone oxidoreductase, 20 Kd subunit
151515912672ABC-2 type transporter
33343218Amino-transferase class IV
44461423CDP-alcohol phosphatidyltransferase
311117Calpain large subunit, domain III
55563529ATP dependent DNA ligase domain
686810644FMN-dependent dehydrogenase
1111116Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
242233163-beta hydroxysteroid dehydrogenase/isomerase family
11111