PFAM Domains • Herpotrichia sp. AK1299 v1.0
Annotations/GenomesAaoar1Corca1Herpot1_1Lopma1Masph1Melpu1Plesi1Spofi1Wesor1TotalAnnotation Description
PFAMs
10,12310,94913,75910,26910,74110,4998,7517,2457,33889,674
111147 transmembrane receptor (rhodopsin family)
505964645752424139468ATPase family associated with various cellular activities (AAA)
585556464454423341429ABC transporter
44444444436ATP synthase alpha/beta family, nucleotide-binding domain
112EGF-like domain
141316141614141415130Elongation factor Tu GTP binding domain
1012121210101081296Helix-loop-helix DNA-binding domain
33333332225Hsp20/alpha crystallin family
9814713987782Hsp70 protein
88687889870KH domain
11111117SH2 domain
222313231423262223189SH3 domain
10101110111110101093Actin
711067410928136593647666Ankyrin repeat
2644455131PAN domain
77778887766ADP-ribosylation factor family
1012181130111099120Eukaryotic aspartyl protease
44444444436Cyclic nucleotide-binding domain
11Cytochrome b/b6/petB
1111111119Cytochrome c
11111112211Double-stranded RNA binding motif
1716216420181416123EF hand
112111184Fe-4S binding domain
33131632224Fibronectin type III domain
11111121110Globin
1419162214191478133Glutathione S-transferase, C-terminal domain
21111111110Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
1010796788772Homeodomain
53333433330lactate/malate dehydrogenase, NAD binding domain
11Low-density lipoprotein receptor repeat class B
44454554439Myosin head (motor domain)
13423017418015118511952671,292Cytochrome P450
1641492371481611711201041211,375Protein kinase domain
14251926142219119159Pyridine nucleotide-disulphide oxidoreductase
242529262726252324229Ras family
222123191922231914182Response regulator receiver domain
22646132228RNase H
576056595363646161534RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
33343333227Copper/zinc superoxide dismutase (SODC)
22223222219Iron/manganese superoxide dismutases, alpha-hairpin domain
14153015231710913146Subtilase family
139125961005496783532755Sugar (and other) transporter
131013101112111010100Thioredoxin
24422321121Trypsin
44444444436Tubulin/FtsZ family, GTPase domain
3641333326von Willebrand factor type A domain
759028792080585754541Zinc finger, C2H2 type
6065676868616050454Zinc finger, C3HC4 type (RING finger)
445835711552Zinc knuckle
22222222218Protein-tyrosine phosphatase
17922420321413223114985811,498short chain dehydrogenase
8698909462101604346680Zinc-binding dehydrogenase
76666666655Thiolase, N-terminal domain
23363622244616920232Beta-ketoacyl synthase, N-terminal domain
764636644462Fe-2S iron-sulfur cluster binding domain
11114Papain family cysteine protease
1111111119Enolase, C-terminal TIM barrel domain
314Cytochrome C and Quinol oxidase polypeptide I
11Cytochrome C oxidase subunit II, periplasmic domain
10910981088981Glutamine amidotransferase class-I
10101010101010101090TCP-1/cpn60 chaperonin family
11ATP synthase A chain
43333433329Glutamine synthetase, catalytic domain
22222222218Triosephosphate isomerase
202220152118131514158E1-E2 ATPase
788817888981Core histone H2A/H2B/H3/H4
11215Copper binding proteins, plastocyanin/azurin family
1081012613103375Alpha amylase, catalytic domain
2222222317Phorbol esters/diacylglycerol binding domain (C1 domain)
67588876560Bacterial transferase hexapeptide (six repeats)
54537533338tRNA synthetases class I (I, L, M and V)
78868776764Cyclin, N-terminal domain
334441322040401213275Carboxylesterase family
44444444436DNA polymerase family B
44344444435ATP synthase subunit C
59955756556Peroxidase
1424231313261253133Beta-lactamase
43433343330C-5 cytosine-specific DNA methylase
22NADH dehydrogenase
292625272330262525236Calcineurin-like phosphoesterase
1614191712151267118Cellulase (glycosyl hydrolase family 5)
77877878867tRNA synthetases class II (D, K and N)
434342414041403839367Mitochondrial carrier protein
11114recA bacterial DNA recombination protein
292322222122181419190Aminotransferase class I and II
99685998871Phosphoribosyl transferase domain
1010111010101010990Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
1111111119Phosphoglycerate kinase
23222222219Ribosomal protein S4/S9 N-terminal domain
22222222218Ribosomal protein S12/S23
1111111119Bacterial regulatory helix-turn-helix proteins, AraC family
1111111119Chaperonin 10 Kd subunit
1213101391010111098C2 domain
191810211021181919155PH domain
118149121196585bZIP transcription factor
403126302024191413217Aldehyde dehydrogenase family
332303257279167290194961102,028Fungal Zn(2)-Cys(6) binuclear cluster domain
252826252225232120215Cytochrome b5-like Heme/Steroid binding domain
55433323331Oxidoreductase molybdopterin binding domain
202814151317171412150Oxidoreductase NAD-binding domain
272934282830252327251SNF2 family N-terminal domain
22222222218Ribosomal protein S7p/S5e
252425232624222222213Ubiquitin-conjugating enzyme
109886776566Isocitrate/isopropylmalate dehydrogenase
22222222218Ribosomal Proteins L2, RNA binding domain
1111111119Hsp90 protein
22222222218Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
1111111119Dihydrofolate reductase
8698711418778Chitin recognition protein
46553532235Cysteine-rich secretory protein family
1111111119Ribosomal protein S3, C-terminal domain
5689744346Cupin
22322222219Annexin
12212211113Eukaryotic-type carbonic anhydrase
1113Chalcone and stilbene synthases, N-terminal domain
343333333282-oxoacid dehydrogenases acyltransferase (catalytic domain)
56776424445Catalase
1111111119Disintegrin
124122214UDP-glucoronosyl and UDP-glucosyl transferase
1181087895571Aminotransferase class-III
22222222218Ribosomal protein S19
1111111119DNA gyrase B
910986985367Thiamine pyrophosphate enzyme, central domain
55444444438Lyase
22222222218Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
231111110Sodium:neurotransmitter symporter family
11Ferritin-like domain
1111111119Adenylate and Guanylate cyclase catalytic domain
1111111119ATP synthase delta (OSCP) subunit
1111111119Orotidine 5'-phosphate decarboxylase / HUMPS family
1111111119Indole-3-glycerol phosphate synthase
121212110Aromatic amino acid lyase
1111111119Pyruvate kinase, barrel domain
121015111011111011101Kinesin motor domain
323240382631323729297DnaJ domain
141414141414141414126Proteasome subunit
889125674261Major intrinsic protein
1111111119ATP synthase
64433332230Glycosyl hydrolase family 1
11111111193'5'-cyclic nucleotide phosphodiesterase
1111111119Profilin
11212111111Ribosomal protein L22p/L17e
22222222218Ribosomal protein L14p/L23e
121081411101091397Ubiquitin family
57445555545Cofilin/tropomyosin-type actin-binding protein
2232322222014-3-3 protein
47353654441Alkaline phosphatase
79635676453Zinc carboxypeptidase
354141432739281822294Aldo/keto reductase family
1219716713121515116Myb-like DNA-binding domain
44444444436Forkhead domain
423512219Glycosyl hydrolases family 32 N-terminal domain
11212111111Ribosomal protein L16p/L10e
32222233322Ribosomal protein S14p/S29e
55544454440FKBP-type peptidyl-prolyl cis-trans isomerase
1111111119Glutathione peroxidase
21111118
91381071085777Flavodoxin
112Protamine P1
1111111119Calreticulin family
152419131615142114151Common central domain of tyrosinase
8711781077873Aminotransferase class-V
1111111119Ribonucleotide reductase, small chain
413846404340423837365DEAD/DEAH box helicase
787681777477826971685Helicase conserved C-terminal domain
1111111119EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
12222222217Ribosomal protein L23
11211111110Pyridoxal-dependent decarboxylase, C-terminal sheet domain
12211222215Ribosomal protein L5
66766876557Pyridoxal-dependent decarboxylase conserved domain
33323222222Citrate synthase, C-terminal domain
56555655547GHMP kinases N terminal domain
88675766659Biotin carboxylase, N-terminal domain
21111111110Tryptophan synthase alpha chain
131213111210891098Pyridoxal-phosphate dependent enzyme
141517191514171313137NUDIX domain
75685556552pfkB family carbohydrate kinase
512910371056Glycosyl hydrolases family 28
124119Luciferase-like monooxygenase
22223222219Ribosomal protein L3
22222222218Ribosomal protein L11, RNA binding domain
151515161415141313130Histidine phosphatase superfamily (branch 1)
1111111119Thymidylate synthase
21115Lipoxygenase
44444444436ATP synthase alpha/beta chain, C terminal domain
55555544543Calponin homology (CH) domain
45363454438Glutamine amidotransferases class-II
22222222218Ribosomal protein S15
111111118Thaumatin family
22222221116Fructose-1-6-bisphosphatase, N-terminal domain
1111111119Ribonucleotide reductase, all-alpha domain
22222222218Ribosomal protein S2
22222122217SRF-type transcription factor (DNA-binding and dimerisation domain)
76787766660GATA zinc finger
555724601556483626377Amino acid permease
59656665553Prolyl oligopeptidase family
33323333326Ribosomal protein L30p/L7e
10111211913116790Histidine phosphatase superfamily (branch 2)
1111111119Respiratory-chain NADH dehydrogenase, 30 Kd subunit
66554454443Aconitase family (aconitate hydratase)
65535434338Glycosyl hydrolase family 10
21242333323Glycosyl hydrolases family 17
22222222218Ribosomal protein S5, N-terminal domain
1111111119Nucleoside diphosphate kinase
1113Tetraspanin family
1222111111Ribosomal protein S10p/S20e
56755774349Arrestin (or S-antigen), N-terminal domain
1111111119Phosphoglucose isomerase
1111111119Carbohydrate phosphorylase
1111111119SecY translocase
1111111119Respiratory-chain NADH dehydrogenase, 49 Kd subunit
22222222218Ribosomal protein L6
35455343436Polyprenyl synthetase
55554455442Hexokinase
87156111076575Dynamin family
11114111112Transcription factor TFIID (or TATA-binding protein, TBP)
68363554444Rieske [2Fe-2S] domain
121116Phytochrome region
33Proton-conducting membrane transporter
910897988876Biotin-requiring enzyme
1111111119Phosphofructokinase
22222222218Ribosomal protein S17
14311111114Hydroxymethylglutaryl-coenzyme A reductase
33333333327FGGY family of carbohydrate kinases, N-terminal domain
11114Sodium:dicarboxylate symporter family
11MerR family regulatory protein
17141414715141210117Enoyl-CoA hydratase/isomerase
22222222218Ribosomal protein S9/S16
22222222218Transcription factor TFIIB repeat
86787775661Cytidine and deoxycytidylate deaminase zinc-binding region
1111111119Molybdopterin oxidoreductase
45666466548Chromo (CHRromatin Organisation MOdifier) domain
33333333327Phosphatidylinositol-specific phospholipase C, Y domain
33534344332Phosphatidylinositol-specific phospholipase C, X domain
14141011912118796D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
22222222218Malic enzyme, N-terminal domain
112PEP-utilising enzyme, mobile domain
122211122146-phosphogluconate dehydrogenase, C-terminal domain
1220171614201444121Multicopper oxidase
11Granulin
81012810109111088WW domain
11212111111Ribosomal RNA adenine dimethylase
22222212116Yeast PIR protein repeat
1161151301101051171031031031,002WD domain, G-beta repeat
76665554650Heavy-metal-associated domain
35444434334Adenylate kinase
23333332325Phosphoglucomutase/phosphomannomutase, C-terminal domain
22222222218Ribosomal protein S8
22212211114Ribosomal protein S11
44544544438LIM domain
21211211112Matrixin
21214112216Regulator of chromosome condensation (RCC1) repeat
22222222218Ribosomal protein S13/S18
11NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
23232222220chorismate binding enzyme
4344344333260s Acidic ribosomal protein
65554544644Prenyltransferase and squalene oxidase repeat
66364666649Protein kinase C terminal domain
1111111119Single-strand binding protein family
1111111119S-adenosylmethionine synthetase, N-terminal domain
87797888870Bromodomain
16161615918161412132Acyl-CoA dehydrogenase, C-terminal domain
141618151816151516143Ubiquitin carboxyl-terminal hydrolase
1111111119Ribosomal protein L36
22222221116Ribonuclease T2 family
33333333327HSF-type DNA-binding
22222222218SRP54-type protein, GTPase domain
11211111110Urease alpha-subunit, N-terminal domain
101214141113114493Serine carboxypeptidase
112Apoptosis regulator proteins, Bcl-2 family
88888888872Phosphatidylinositol 3- and 4-kinase
44341231123Transketolase, thiamine diphosphate binding domain
44733554540Glycosyl hydrolases family 11
75543553340Inositol monophosphatase family
44443444435Glutaredoxin
46352553235Isocitrate lyase family
22222222218Serine hydroxymethyltransferase
45564443338Iron-containing alcohol dehydrogenase
22222222218Ribosomal protein L10
44344333331KOW motif
111111118Ribosomal protein L34
11Ribosomal protein L33
32323212220RF-1 domain
44461762337Sodium:solute symporter family
1111111119Imidazoleglycerol-phosphate dehydratase
1111111119DNA polymerase family A
1111111119IMP dehydrogenase / GMP reductase domain
1111111119Glucose-6-phosphate dehydrogenase, NAD binding domain
66666665653Protein phosphatase 2C
23323333325Nucleotidyl transferase
34544423332Carbonic anhydrase
11413111114Phosphoribulokinase / Uridine kinase family
7811761184466Fatty acid desaturase
66666666654MutS domain V
1111111119Delta-aminolevulinic acid dehydratase
67474553243Arginase family
66667666655MCM P-loop domain
22323322221Squalene/phytoene synthase
11Bacterial extracellular solute-binding proteins, family 5 Middle
112Bacterial extracellular solute-binding proteins, family 3
898889991078FHA domain
546569543459473837457AMP-binding enzyme
45856544445G-protein alpha subunit
99101011778879HMG (high mobility group) box
112NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
22Cytochrome c oxidase subunit III
181821171719201611157His Kinase A (phospho-acceptor) domain
34233353228Armadillo/beta-catenin-like repeat
30341827932262325224Tetratricopeptide repeat
35432542432Ion transport protein
1111111119DNA gyrase/topoisomerase IV, subunit A
13121011712121112100BRCA1 C Terminus (BRCT) domain
76696776761Glycosyl transferases group 1
38222723534Glycosyl transferase family 2
13354323428SAM domain (Sterile alpha motif)
1111111119linker histone H1 and H5 family
1111111119Ribosomal protein L7/L12 C-terminal domain
816841562151Pectate lyase
114121111ribonuclease
11211111110Urease, gamma subunit
44444444436CoA-ligase
193647233130151123235Phosphopantetheine attachment site
33333333327Formyl transferase
1010101010998884Metallopeptidase family M24
131415215151513102Leucine Rich Repeat
497114581353383129356alpha/beta hydrolase fold
33333333327RNA polymerase Rpb2, domain 6
33444434332PB1 domain
22222222218Staphylococcal nuclease homologue
121112121211111212105Rab-GTPase-TBC domain
1111111119Tudor domain
1111111119WH1 domain
46925543543Zinc finger, ZZ type
33323333326HRDC domain
997989910979CBS domain
22222222218Ribosomal protein L13
22222222218Ribosomal protein L4/L1 family
1111111119Clp protease
22423443327S1 RNA binding domain
1111111119HIUase/Transthyretin family
54764534442AhpC/TSA family
44544544438tRNA synthetases class I (W and Y)
11221211112UvrD/REP helicase N-terminal domain
541149556554Rhodanese-like domain
22222212217Universal stress protein family
525340582955382832385Acetyltransferase (GNAT) family
1111111119SecE/Sec61-gamma subunits of protein translocation complex
1111111119C-terminal regulatory domain of Threonine dehydratase
22222222218AIR synthase related protein, N-terminal domain
88787888870tRNA synthetase class II core domain (G, H, P, S and T)
22222222218SpoU rRNA Methylase family
22222222218Tetrapyrrole (Corrin/Porphyrin) Methylases
1111111119Glycosyl transferase family, a/b domain
211111119PDZ domain
1097104976466Class II Aldolase and Adducin N-terminal domain
44444334434Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
55555445543Fes/CIP4, and EFC/F-BAR homology domain
44243456537IQ calmodulin-binding motif
22222222218Phosphoinositide 3-kinase family, accessory domain (PIK domain)
65364665546Phospholipase D Active site motif
11414111115Regulator of G protein signaling domain
33333333327GTPase-activator protein for Ras-like GTPase
44444444436RasGEF domain
44444444436RasGEF N-terminal motif
881088888874RhoGAP domain
66766566654RhoGEF domain
32535223227SPRY domain
33333333327RNA polymerase Rpb1, domain 2
11131211112Guanylate kinase
54453444336Gelsolin repeat
1110597119111184UBA/TS-N domain
181814211220171617153PHD-finger
11Filamin/ABP280 repeat
1111111119GGL domain
55555554544HECT-domain (ubiquitin-transferase)
11121223114Helix-hairpin-helix motif
1111111119MSP (Major sperm protein) domain
49382476649Ribonuclease III domain
22425232224Region in Clathrin and VPS
22222222218RanBP1 domain
22122222217PPIC-type PPIASE domain
12121111111Zn-finger in Ran binding protein and others
17191022822221418152Zinc finger C-x8-C-x5-C-x3-H type (and similar)
11B-box zinc finger
3444332225Poly(ADP-ribose) polymerase catalytic domain
22222212217Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
777931942396786861607F-box domain
1111111119Elongation factor 1 gamma, conserved domain
33533333329Calpain family cysteine protease
22223322220Copper fist DNA binding domain
55565555647CRAL/TRIO domain
161546375021171315230BTB/POZ domain
24222321220Ricin-type beta-trefoil lectin domain
1111111119Inhibitor of Apoptosis domain
34444443333Voltage gated chloride channel
24743321127Caspase domain
1517815317151311114GDSL-like Lipase/Acylhydrolase
1111111119Poly-adenylate binding protein, unique domain
11121118POLO box duplicated region
282629221828191420204ABC transporter transmembrane region
91491071185679FAD binding domain
91020871073882Condensation domain
1111111119S-adenosyl-L-homocysteine hydrolase, NAD binding domain
1111111119HAMP domain
22222222218ribosomal L5P family C-terminus
67656667554Insulinase (Peptidase family M16)
33333333327Dehydrogenase E1 component