PFAM Domains • Mortierella verticillata NRRL 6337
Annotations/GenomesLobtra1Morel2Morve1Parpar1Phybl2Rambr1Umbra1TotalAnnotation Description
PFAMs
10,41910,16011,94011,3919,2166,4508,51568,091
2137 transmembrane receptor (Secretin family)
257333237 transmembrane sweet-taste receptor of 3 GCPR
43474342484040303ATPase family associated with various cellular activities (AAA)
669410246486135452ABC transporter
7659124750ATP synthase alpha/beta family, nucleotide-binding domain
33EGF-like domain
23191719211718134Elongation factor Tu GTP binding domain
21262544351331195Helix-loop-helix DNA-binding domain
53210Hsp20/alpha crystallin family
161416201210997Hsp70 protein
91311111281377KH domain
11114SH2 domain
27393135372345237SH3 domain
11u-PAR/Ly-6 domain
1411151411141089Actin
1259169371264209Ankyrin repeat
11211810109988ADP-ribosylation factor family
19383021331223176Eukaryotic aspartyl protease
656672638Cyclic nucleotide-binding domain
112Cystatin domain
112Cytochrome b(C-terminal)/b6/petD
134Cytochrome b/b6/petB
132111110Cytochrome c
332111213Double-stranded RNA binding motif
24311352534141EF hand
1111154Fe-4S binding domain
1113Fibronectin type III domain
213Globin
14149873815105Glutathione S-transferase, C-terminal domain
222332115Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
912823281618114Homeodomain
55Kazal-type serine protease inhibitor domain
658552334lactate/malate dehydrogenase, NAD binding domain
57717166866Myosin head (motor domain)
27303534545149280Cytochrome P450
1762021822342201281651,307Protein kinase domain
91110171681687Pyridine nucleotide-disulphide oxidoreductase
39414460543039307Ras family
1820211818320118Response regulator receiver domain
3524115RNase H
75888091975695582RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
1337Reverse transcriptase (RNA-dependent DNA polymerase)
356328229Copper/zinc superoxide dismutase (SODC)
222113112Iron/manganese superoxide dismutases, alpha-hairpin domain
18223216245011173Subtilase family
1114153428847157Sugar (and other) transporter
16191915131513110Thioredoxin
12216Trefoil (P-type) domain
522251668Trypsin
666898649Tubulin/FtsZ family, GTPase domain
314von Willebrand factor type A domain
5010544292034969549Zinc finger, C2H2 type
26944556762263Zinc finger, C3HC4 type (RING finger)
9181217701119156Zinc knuckle
634652329Protein-tyrosine phosphatase
32525834333471314short chain dehydrogenase
17303219232234177Zinc-binding dehydrogenase
767854643Thiolase, N-terminal domain
222322215Beta-ketoacyl synthase, N-terminal domain
674432262Fe-2S iron-sulfur cluster binding domain
112Papain family cysteine protease
322221113Enolase, C-terminal TIM barrel domain
213Cytochrome C and Quinol oxidase polypeptide I
112Cytochrome C oxidase subunit II, periplasmic domain
810109108863Glutamine amidotransferase class-I
111210111591179TCP-1/cpn60 chaperonin family
11ATP synthase A chain
455562431Glutamine synthetase, catalytic domain
12211119Triosephosphate isomerase
30353840261925213E1-E2 ATPase
131413142010993Core histone H2A/H2B/H3/H4
2112116Copper binding proteins, plastocyanin/azurin family
332111617Alpha amylase, catalytic domain
68811731053Phorbol esters/diacylglycerol binding domain (C1 domain)
5687561047Bacterial transferase hexapeptide (six repeats)
757744438tRNA synthetases class I (I, L, M and V)
11151219181416105Cyclin, N-terminal domain
213019211680Carboxylesterase family
455545533DNA polymerase family B
363443427ATP synthase subunit C
1113Legume lectin domain
212422215Peroxidase
114Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
91822120474Beta-lactamase
233141216C-5 cytosine-specific DNA methylase
11NADH dehydrogenase
30353336341429211Calcineurin-like phosphoesterase
8611446847Cellulase (glycosyl hydrolase family 5)
668666644tRNA synthetases class II (D, K and N)
59626461544245387Mitochondrial carrier protein
18172020201315123Aminotransferase class I and II
58571110955Phosphoribosyl transferase domain
141414151471189Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11111117Phosphoglycerate kinase
243332320Ribosomal protein S4/S9 N-terminal domain
333442322Ribosomal protein S12/S23
22Bacterial regulatory helix-turn-helix proteins, AraC family
112221110Chaperonin 10 Kd subunit
2931311922919160C2 domain
23322435481445221PH domain
2215213119413125bZIP transcription factor
1416151512141399Aldehyde dehydrogenase family
23403457471760278Fungal Zn(2)-Cys(6) binuclear cluster domain
24282834391530198Cytochrome b5-like Heme/Steroid binding domain
343211216Oxidoreductase molybdopterin binding domain
1013141413111489Oxidoreductase NAD-binding domain
22222424201621149SNF2 family N-terminal domain
222432318Ribosomal protein S7p/S5e
23252422201820152Ubiquitin-conjugating enzyme
878785649Isocitrate/isopropylmalate dehydrogenase
333443424Ribosomal Proteins L2, RNA binding domain
233443322Hsp90 protein
233262220Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
111221210Dihydrofolate reductase
11125Chitin recognition protein
3111319331Cysteine-rich secretory protein family
112542217Ribosomal protein S3, C-terminal domain
22Cupin
2226Annexin
1225Eukaryotic-type carbonic anhydrase
4555434302-oxoacid dehydrogenases acyltransferase (catalytic domain)
333422320Catalase
244321319Disintegrin
3191519UDP-glucoronosyl and UDP-glucosyl transferase
444662531Aminotransferase class-III
333442322Ribosomal protein S19
11111117DNA gyrase B
112532317Thiamine pyrophosphate enzyme, central domain
353443426Lyase
444332323Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
23322416Ferritin-like domain
222221112Adenylate and Guanylate cyclase catalytic domain
12211119ATP synthase delta (OSCP) subunit
11111117Orotidine 5'-phosphate decarboxylase / HUMPS family
11111117Indole-3-glycerol phosphate synthase
333333220Pyruvate kinase, barrel domain
14151529201218123Kinesin motor domain
29333142343030229DnaJ domain
1414151414141398Proteasome subunit
276223426Major intrinsic protein
12222211ATP synthase
22Glycosyl hydrolase family 1
3327633273'5'-cyclic nucleotide phosphodiesterase
3211119Profilin
333452222Ribosomal protein L22p/L17e
233332319Ribosomal protein L14p/L23e
20312517231020146Ubiquitin family
573743635Cofilin/tropomyosin-type actin-binding protein
34333532414-3-3 protein
345334224Alkaline phosphatase
45714232Zinc carboxypeptidase
17172218201928141Aldo/keto reductase family
19382219202325166Myb-like DNA-binding domain
67710105752Forkhead domain
123Glycosyl hydrolases family 32 N-terminal domain
314411115Ribosomal protein L16p/L10e
222342318Ribosomal protein S14p/S29e
898463745FKBP-type peptidyl-prolyl cis-trans isomerase
221221111Glutathione peroxidase
331310
56691371460Flavodoxin
11Tropomyosin
354123119Calreticulin family
12425Common central domain of tyrosinase
91111856757Aminotransferase class-V
121311110Ribonucleotide reductase, small chain
57567152473945367DEAD/DEAH box helicase
85919784746875574Helicase conserved C-terminal domain
11Fructose-bisphosphate aldolase class-I
11111117EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
333432321Ribosomal protein L23
14211110Pyridoxal-dependent decarboxylase, C-terminal sheet domain
233352321Ribosomal protein L5
454454632Pyridoxal-dependent decarboxylase conserved domain
424221116Citrate synthase, C-terminal domain
665664639GHMP kinases N terminal domain
8899116859Biotin carboxylase, N-terminal domain
11111117Tryptophan synthase alpha chain
8999971162Pyridoxal-phosphate dependent enzyme
15172020161315116NUDIX domain
444667637pfkB family carbohydrate kinase
2119316Glycosyl hydrolases family 28
324433221Ribosomal protein L3
333452424Ribosomal protein L11, RNA binding domain
886111141058Histidine phosphatase superfamily (branch 1)
1111116Thymidylate synthase
5659125749ATP synthase alpha/beta chain, C terminal domain
1413111097872Calponin homology (CH) domain
2105565538Glutamine amidotransferases class-II
323222317Ribosomal protein S15
242221215'Cold-shock' DNA-binding domain
55414Thaumatin family
11111117Fructose-1-6-bisphosphatase, N-terminal domain
332421217Ribonucleotide reductase, all-alpha domain
232442320Ribosomal protein S2
444972636SRF-type transcription factor (DNA-binding and dimerisation domain)
2824243835822179GATA zinc finger
9371310191525128Amino acid permease
1010137617871Prolyl oligopeptidase family
222551118Ribosomal protein L30p/L7e
6117323537Histidine phosphatase superfamily (branch 2)
11211118Respiratory-chain NADH dehydrogenase, 30 Kd subunit
465653635Aconitase family (aconitate hydratase)
11Glycosyl hydrolase family 10
45531523Glycosyl hydrolases family 17
333352322Ribosomal protein S5, N-terminal domain
223646326Nucleoside diphosphate kinase
849652438Tetraspanin family
222332216Ribosomal protein S10p/S20e
13121933221820137Arrestin (or S-antigen), N-terminal domain
11111117Phosphoglucose isomerase
1112117Carbohydrate phosphorylase
212222112SecY translocase
11211118Respiratory-chain NADH dehydrogenase, 49 Kd subunit
243342321Ribosomal protein L6
333547328Polyprenyl synthetase
4661073844Hexokinase
911151083662Dynamin family
221112110Biopterin-dependent aromatic amino acid hydroxylase
11122119Transcription factor TFIID (or TATA-binding protein, TBP)
776451434Rieske [2Fe-2S] domain
145Proton-conducting membrane transporter
91010131071069Biotin-requiring enzyme
111221210Phosphofructokinase
233222216Ribosomal protein S17
212311111Hydroxymethylglutaryl-coenzyme A reductase
333661527FGGY family of carbohydrate kinases, N-terminal domain
2122119Sodium:dicarboxylate symporter family
12109111191274Enoyl-CoA hydratase/isomerase
333442322Ribosomal protein S9/S16
11PTS HPr component phosphorylation site
353332322Transcription factor TFIIB repeat
666843740Cytidine and deoxycytidylate deaminase zinc-binding region
132121111Molybdopterin oxidoreductase
221622182216107Chromo (CHRromatin Organisation MOdifier) domain
11114Phosphatidylinositol-specific phospholipase C, Y domain
21115Phosphatidylinositol-specific phospholipase C, X domain
556553534D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
223541320Malic enzyme, N-terminal domain
2114PEP-utilising enzyme, mobile domain
111221196-phosphogluconate dehydrogenase, C-terminal domain
26555528Multicopper oxidase
121619127141292WW domain
333333321Ribosomal RNA adenine dimethylase
1613541621641621081451,256WD domain, G-beta repeat
11ATP synthase, Delta/Epsilon chain, long alpha-helix domain
11Calponin family repeat
6774410442Heavy-metal-associated domain
445653431Adenylate kinase
323222216Phosphoglucomutase/phosphomannomutase, C-terminal domain
333332219Ribosomal protein S8
333232319Ribosomal protein S11
1198161491279LIM domain
739542434Regulator of chromosome condensation (RCC1) repeat
333422320Ribosomal protein S13/S18
11
111115Tau and MAP protein, tubulin-binding repeat
11NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
11REV protein (anti-repression trans-activator protein)
221222213chorismate binding enzyme
56687354060s Acidic ribosomal protein
2226CUB domain
445444429Prenyltransferase and squalene oxidase repeat
998101151062Protein kinase C terminal domain
22111119Single-strand binding protein family
134Type II/IV secretion system protein
11211118S-adenosylmethionine synthetase, N-terminal domain
16161818141112105Bromodomain
16181816161112107Acyl-CoA dehydrogenase, C-terminal domain
22252520211519147Ubiquitin carboxyl-terminal hydrolase
11111117Ribosomal protein L36
136143321Ribonuclease T2 family
7771914141280HSF-type DNA-binding
222322215SRP54-type protein, GTPase domain
1112218Urease alpha-subunit, N-terminal domain
3456714342Serine carboxypeptidase
11111112108972Phosphatidylinositol 3- and 4-kinase
222221213Transketolase, thiamine diphosphate binding domain
223111212WHEP-TRS domain
222222214Inositol monophosphatase family
666859646Glutaredoxin
11121129Isocitrate lyase family
222222214Serine hydroxymethyltransferase
1111116Iron-containing alcohol dehydrogenase
323422117Ribosomal protein L10
797983750KOW motif
11111117Ribosomal protein L34
1113Ribosomal protein L33
333323219RF-1 domain
223119Sodium:solute symporter family
11111117Imidazoleglycerol-phosphate dehydratase
11111117DNA polymerase family A
11121118IMP dehydrogenase / GMP reductase domain
232331216Glucose-6-phosphate dehydrogenase, NAD binding domain
11111010115664Protein phosphatase 2C
435642529Nucleotidyl transferase
334126120Carbonic anhydrase
222212213Phosphoribulokinase / Uridine kinase family
1111156167672Fatty acid desaturase
666665641MutS domain V
11111117Delta-aminolevulinic acid dehydratase
221231314Arginase family
888668650MCM P-loop domain
214441218Squalene/phytoene synthase
1717172018614109FHA domain
11NADH-ubiquinone/plastoquinone oxidoreductase chain 6
27353434362125212AMP-binding enzyme
78912104959G-protein alpha subunit
15131423231216116HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
112Cytochrome c oxidase subunit III
1213149821270His Kinase A (phospho-acceptor) domain
5769104748Armadillo/beta-catenin-like repeat
12391624312236180Tetratricopeptide repeat
91416674864Ion transport protein
21111118DNA gyrase/topoisomerase IV, subunit A
71086691258BRCA1 C Terminus (BRCT) domain
454785740Glycosyl transferases group 1
262252625Glycosyl transferase family 2
212432317SAM domain (Sterile alpha motif)
43421317linker histone H1 and H5 family
11211118Ribosomal protein L7/L12 C-terminal domain
11ribonuclease
1112218Urease, gamma subunit
777433334CoA-ligase
358682638Phosphopantetheine attachment site
222222214Formyl transferase
11Cellulose binding domain
1313161514111294Metallopeptidase family M24
262713332626169Leucine Rich Repeat
63988232132137alpha/beta hydrolase fold
454335327RNA polymerase Rpb2, domain 6
911139109869PB1 domain
222222214Staphylococcal nuclease homologue
20162031291120147Rab-GTPase-TBC domain
11111117Tudor domain
222311213WH1 domain
778653743Zinc finger, ZZ type
11111128HRDC domain
14151717181214107CBS domain
333352221Ribosomal protein L13
222444220Ribosomal protein L4/L1 family
11111117Clp protease
677434536S1 RNA binding domain
2221119HIUase/Transthyretin family
255657737AhpC/TSA family
444446430tRNA synthetases class I (W and Y)
1113UvrD/REP helicase N-terminal domain
1281412851069Rhodanese-like domain
433141221048Universal stress protein family
24462726272039209Acetyltransferase (GNAT) family
11212119SecE/Sec61-gamma subunits of protein translocation complex
11111218C-terminal regulatory domain of Threonine dehydratase
222223215AIR synthase related protein, N-terminal domain
11111191191173tRNA synthetase class II core domain (G, H, P, S and T)
33333318SpoU rRNA Methylase family
333332320Tetrapyrrole (Corrin/Porphyrin) Methylases
11111117Glycosyl transferase family, a/b domain
2114PDZ domain
111222211Class II Aldolase and Adducin N-terminal domain
22Diacylglycerol kinase accessory domain
5651062438Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
44512851149Fes/CIP4, and EFC/F-BAR homology domain
676683642IQ calmodulin-binding motif
334332220Phosphoinositide 3-kinase family, accessory domain (PIK domain)
453683534Phospholipase D Active site motif
7381510447Regulator of G protein signaling domain
44410105643GTPase-activator protein for Ras-like GTPase
151115191881197RasGEF domain
1091212103662RasGEF N-terminal motif
21222434291623169RhoGAP domain
16161531281122139RhoGEF domain
66611107854SPRY domain
445333325RNA polymerase Rpb1, domain 2
222111110Guanylate kinase
777784646Gelsolin repeat
13231413151519112UBA/TS-N domain
21232324261228157PHD-finger
414331420GGL domain
9910109121069HECT-domain (ubiquitin-transferase)
12111118Helix-hairpin-helix motif
334322522MSP (Major sperm protein) domain
144222318Ribonuclease III domain
637622228Region in Clathrin and VPS
344223220RanBP1 domain
21222211PPIC-type PPIASE domain
232541421Zn-finger in Ran binding protein and others
8211314141421105Zinc finger C-x8-C-x5-C-x3-H type (and similar)
224B-box zinc finger
22311211Poly(ADP-ribose) polymerase catalytic domain
1121117Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
8184111220212568610F-box domain
213221112Elongation factor 1 gamma, conserved domain
223111111Calpain family cysteine protease
222471422Copper fist DNA binding domain
1013121188769CRAL/TRIO domain
1517361231113125BTB/POZ domain
389881046Ricin-type beta-trefoil lectin domain
11114Inhibitor of Apoptosis domain
333222217Voltage gated chloride channel
455458132Caspase domain
35312821144GDSL-like Lipase/Acylhydrolase
222651422Poly-adenylate binding protein, unique domain
111115POLO box duplicated region
11NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
33546220245216261ABC transporter transmembrane region
426Integrase core domain
445794841FAD binding domain
124119Condensation domain
12211119S-adenosyl-L-homocysteine hydrolase, NAD binding domain
421231215HAMP domain
444452326ribosomal L5P family C-terminus
8787910756Insulinase (Peptidase family M16)
665543534Dehydrogenase E1 component
11111117Lumazine binding domain
987678752Elongation factor G C-terminus
112RNA dependent RNA polymerase
444665534HMGL-like
455565535DnaJ central domain
11Sulfotransferase domain
11Starch binding domain
223532118Ribosomal protein L1p/L10e family
131718161381297Cation transporting ATPase, C-terminus
19242321151317132Cation transporter/ATPase, N-terminus
1111116dUTPase
445652632Aconitase C-terminal domain
444673533Amino acid kinase family
11111117N-(5'phosphoribosyl)anthranilate (PRA) isomerase
232322115Acyl transferase domain
1112218Urease beta subunit
31127Dihydrodipicolinate synthetase family
22502829422640237haloacid dehalogenase-like hydrolase
1113Glycosyl hydrolases family 2
8119138141477Glycosyl hydrolases family 18
11111117Proliferating cell nuclear antigen, N-terminal domain
1111116Translation initiation factor IF-3, C-terminal domain
13111119Adenylosuccinate synthetase
11111117Asparaginase, N-terminal
333233320Peptidase S24-like
222442218Inorganic pyrophosphatase
51011748954Glycosyl hydrolases family 16
114431317Glycosyl hydrolases family 15
5967175655NADH:flavin oxidoreductase / NADH oxidase family
2222232153-hydroxyacyl-CoA dehydrogenase, C-terminal domain
675341834Glycosyl hydrolase family 20, catalytic domain
444433325HhH-GPD superfamily base excision DNA repair protein
11111117AIR carboxylase
5610356439GMC oxidoreductase
554722328Asparagine synthase
1168Fungal cellulose binding domain
161415151681094Septin
112142213EF-1 guanine nucleotide exchange domain
11121118Homoserine dehydrogenase
211318Flavin-binding monooxygenase-like
11LPXTG cell wall anchor motif
333333321tRNA synthetases class I (E and Q), catalytic domain
222333116tRNA synthetases class I (R)
555653635XPG N-terminal domain
815991171271Metallo-beta-lactamase superfamily
22221211F5/8 type C domain
656644435Choline/Carnitine o-acyltransferase
111115Putative esterase
12252416Glycosyl hydrolase family 9
11111218Ferrochelatase
233334321Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
12111118Arginosuccinate synthase
11211118Electron transfer flavoprotein FAD-binding domain
554884741RNB domain
54413112645CNH domain
455543430Diacylglycerol kinase catalytic domain
141315151331184Dual specificity phosphatase, catalytic domain
1122129MyTH4 domain
78711861158P21-Rho-binding domain
24202131251021152PX domain
465742634Ras association (RalGDS/AF-6) domain
999764549UBX domain
775874745VHS domain
1111116Phosphoinositide 3-kinase C2
223432319DAHP synthetase I family
555655839Carbon-nitrogen hydrolase
1244112N-acetyltransferase
222112111Prephenate dehydratase
686772642Syntaxin
55257Pentapeptide repeats (8 copies)
67612931154Pumilio-family RNA binding repeat
11910666654Histone-like transcription factor (CBF/NF-Y) and archaeal histone
222222214Pterin binding enzyme
121221110ER lumen protein retaining receptor
222212213Glycoprotease family
11111117Histidinol dehydrogenase
222333318impB/mucB/samB family
1113Phosphoenolpyruvate carboxykinase C-terminal P-loop domain
112Ribonuclease P
332210
222331215Ribosomal L15
625741227Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
12111219Ribosomal prokaryotic L21 protein
1111116Ribosomal L28 family
221331214Ribosomal L29 protein
121321212Ribosomal L39 protein
222221213Ribosomal S17
11111117Ribulose-phosphate 3 epimerase family
11111117Translationally controlled tumour protein
334313