Due to a planned NERSC power outage, JGI portals will be unavailable 6:00am PDT July 10 - 11:59pm PDT July 14. System Status updates available here.
PFAM Domains • Verticillium alfalfae VaMs.102
Annotations/GenomesAcral2Colgr1Gloac1Gloci1Sodal1Veral1Verda1TotalAnnotation Description
PFAMs
6,7189,26811,08712,7466,7657,4658,09362,142
11121177 transmembrane receptor (rhodopsin family)
37475162413541314ATPase family associated with various cellular activities (AAA)
34566073324947351ABC transporter
444444428ATP synthase alpha/beta family, nucleotide-binding domain
1414141414121496Elongation factor Tu GTP binding domain
91111121051371Helix-loop-helix DNA-binding domain
222221213Hsp20/alpha crystallin family
78108791059Hsp70 protein
999997961KH domain
112Ribulose bisphosphate carboxylase large chain, catalytic domain
11111117SH2 domain
23222324252121159SH3 domain
10910101081067Actin
306991170326374529Ankyrin repeat
13491119PAN domain
777777850ADP-ribosylation factor family
81519189151599Eukaryotic aspartyl protease
444444327Cyclic nucleotide-binding domain
11111117Cytochrome c
21115Double-stranded RNA binding motif
18191818161416119EF hand
121111294Fe-4S binding domain
234322319Fibronectin type III domain
222222214Globin
1010161684569Glutathione S-transferase, C-terminal domain
21112119Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
57911691158Homeodomain
323342320lactate/malate dehydrogenase, NAD binding domain
112Low-density lipoprotein receptor repeat class B
555545534Myosin head (motor domain)
52135218272496765858Cytochrome P450
11510111112710198113766Protein kinase domain
10202627111215121Pyridine nucleotide-disulphide oxidoreductase
21232423212124157Ras family
1214151512151699Response regulator receiver domain
34551220RNase H
58606264604954407RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
11Reverse transcriptase (RNA-dependent DNA polymerase)
121112210Copper/zinc superoxide dismutase (SODC)
333333321Iron/manganese superoxide dismutases, alpha-hairpin domain
720414492018159Subtilase family
2985138179289293644Sugar (and other) transporter
1113131310101181Thioredoxin
132411315Trypsin
465544533Tubulin/FtsZ family, GTPase domain
344613324von Willebrand factor type A domain
50627888474352420Zinc finger, C2H2 type
37414540413540279Zinc finger, C3HC4 type (RING finger)
6851047646Zinc knuckle
222222214Protein-tyrosine phosphatase
571231872357788102869short chain dehydrogenase
376998129345056473Zinc-binding dehydrogenase
555557739Thiolase, N-terminal domain
16443047161211176Beta-ketoacyl synthase, N-terminal domain
5558544362Fe-2S iron-sulfur cluster binding domain
11111117Enolase, C-terminal TIM barrel domain
889886855Glutamine amidotransferase class-I
1010101010101070TCP-1/cpn60 chaperonin family
11ATP synthase A chain
333435526Glutamine synthetase, catalytic domain
222222214Triosephosphate isomerase
19222327191818146E1-E2 ATPase
999885856Core histone H2A/H2B/H3/H4
312131247758Alpha amylase, catalytic domain
232222215Phorbol esters/diacylglycerol binding domain (C1 domain)
9108138121575Bacterial transferase hexapeptide (six repeats)
433343323tRNA synthetases class I (I, L, M and V)
667666845Cyclin, N-terminal domain
226446222119176Carboxylesterase family
444444428DNA polymerase family B
455565535ATP synthase subunit C
410121356757Peroxidase
917208761Beta-lactamase
333432321C-5 cytosine-specific DNA methylase
11NADH dehydrogenase
26282929242327186Calcineurin-like phosphoesterase
3101817481171Cellulase (glycosyl hydrolase family 5)
778877751tRNA synthetases class II (D, K and N)
36424544353639277Mitochondrial carrier protein
15182634161719145Aminotransferase class I and II
8109875754Phosphoribosyl transferase domain
101010101091069Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11111117Phosphoglycerate kinase
222222214Ribosomal protein S4/S9 N-terminal domain
222222214Ribosomal protein S12/S23
22Bacterial regulatory helix-turn-helix proteins, AraC family
11111117Chaperonin 10 Kd subunit
111412141161482C2 domain
17191918151414116PH domain
111514131061483bZIP transcription factor
11242844122522166Aldehyde dehydrogenase family
872004054501001461671,555Fungal Zn(2)-Cys(6) binuclear cluster domain
24272934212224181Cytochrome b5-like Heme/Steroid binding domain
254523425Oxidoreductase molybdopterin binding domain
12182228101118119Oxidoreductase NAD-binding domain
22252828232123170SNF2 family N-terminal domain
222222214Ribosomal protein S7p/S5e
20202121201820140Ubiquitin-conjugating enzyme
579857748Isocitrate/isopropylmalate dehydrogenase
222222214Ribosomal Proteins L2, RNA binding domain
11111117Hsp90 protein
222222214Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
11111117Dihydrofolate reductase
512121234351Chitin recognition protein
155524426Cysteine-rich secretory protein family
11111117Ribosomal protein S3, C-terminal domain
4985632Cupin
322233318Annexin
134413218Eukaryotic-type carbonic anhydrase
2112118Chalcone and stilbene synthases, N-terminal domain
3444333242-oxoacid dehydrogenases acyltransferase (catalytic domain)
254534528Catalase
11111117Disintegrin
142632220UDP-glucoronosyl and UDP-glucosyl transferase
710141679972Aminotransferase class-III
222222214Ribosomal protein S19
11111117DNA gyrase B
357936639Thiamine pyrophosphate enzyme, central domain
355635532Lyase
22222212Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
222223417Sodium:neurotransmitter symporter family
11Ferritin-like domain
1111116Adenylate and Guanylate cyclase catalytic domain
11111117ATP synthase delta (OSCP) subunit
1112117Orotidine 5'-phosphate decarboxylase / HUMPS family
11111117Indole-3-glycerol phosphate synthase
1211229Aromatic amino acid lyase
11111117Pyruvate kinase, barrel domain
1011101110121175Kinesin motor domain
25272829252226182DnaJ domain
1414141414141397Proteasome subunit
256624328Major intrinsic protein
11111117ATP synthase
114614320Glycosyl hydrolase family 1
111111173'5'-cyclic nucleotide phosphodiesterase
11111117Profilin
11111117Ribosomal protein L22p/L17e
222222214Ribosomal protein L14p/L23e
1211101599975Ubiquitin family
555553533Cofilin/tropomyosin-type actin-binding protein
22222221414-3-3 protein
378845540Alkaline phosphatase
61111139151580Zinc carboxypeptidase
17314253183633230Aldo/keto reductase family
1314161514101496Myb-like DNA-binding domain
444544429Forkhead domain
33313316Glycosyl hydrolases family 32 N-terminal domain
1111116Ribosomal protein L16p/L10e
222222214Ribosomal protein S14p/S29e
333334322FKBP-type peptidyl-prolyl cis-trans isomerase
11111117Glutathione peroxidase
211212211
511121356658Flavodoxin
1111116Calreticulin family
412273347693Common central domain of tyrosinase
68101277757Aminotransferase class-V
11111117Ribonucleotide reductase, small chain
39383940373639268DEAD/DEAH box helicase
71777677676470502Helicase conserved C-terminal domain
11111117EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
222222214Ribosomal protein L23
1111116Pyridoxal-dependent decarboxylase, C-terminal sheet domain
11211118Ribosomal protein L5
368734637Pyridoxal-dependent decarboxylase conserved domain
244422220Citrate synthase, C-terminal domain
555555535GHMP kinases N terminal domain
578854643Biotin carboxylase, N-terminal domain
11111117Tryptophan synthase alpha chain
1011171910111391Pyridoxal-phosphate dependent enzyme
16202019151114115NUDIX domain
477756642pfkB family carbohydrate kinase
1715201121167Glycosyl hydrolases family 28
22318Luciferase-like monooxygenase
222222214Ribosomal protein L3
222222214Ribosomal protein L11, RNA binding domain
1112121510141589Histidine phosphatase superfamily (branch 1)
11111117Thymidylate synthase
134Lipoxygenase
444444428ATP synthase alpha/beta chain, C terminal domain
555555535Calponin homology (CH) domain
668864543Glutamine amidotransferases class-II
22222212Ribosomal protein S15
111115Thaumatin family
222222214Fructose-1-6-bisphosphatase, N-terminal domain
11111117Ribonucleotide reductase, all-alpha domain
222222214Ribosomal protein S2
222226723SRF-type transcription factor (DNA-binding and dimerisation domain)
8109886655GATA zinc finger
17395674172931263Amino acid permease
366633330Prolyl oligopeptidase family
222222214Ribosomal protein L30p/L7e
313101076857Histidine phosphatase superfamily (branch 2)
11111117Respiratory-chain NADH dehydrogenase, 30 Kd subunit
456745435Aconitase family (aconitate hydratase)
3106734437Glycosyl hydrolase family 10
346524630Glycosyl hydrolases family 17
222212213Ribosomal protein S5, N-terminal domain
11111117Nucleoside diphosphate kinase
11Tetraspanin family
11111229Ribosomal protein S10p/S20e
324234523Arrestin (or S-antigen), N-terminal domain
11111117Phosphoglucose isomerase
11111117Carbohydrate phosphorylase
11111117SecY translocase
11111117Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222222214Ribosomal protein L6
354733328Polyprenyl synthetase
355545532Hexokinase
8891085654Dynamin family
11111117Transcription factor TFIID (or TATA-binding protein, TBP)
578955544Rieske [2Fe-2S] domain
11Phytochrome region
710111177861Biotin-requiring enzyme
11111117Phosphofructokinase
222222214Ribosomal protein S17
11111117Hydroxymethylglutaryl-coenzyme A reductase
444443427FGGY family of carbohydrate kinases, N-terminal domain
11111128Sodium:dicarboxylate symporter family
1013181810131294Enoyl-CoA hydratase/isomerase
232222215Ribosomal protein S9/S16
222222214Transcription factor TFIIB repeat
510101066855Cytidine and deoxycytidylate deaminase zinc-binding region
11111128Molybdopterin oxidoreductase
71071366655Chromo (CHRromatin Organisation MOdifier) domain
355544430Phosphatidylinositol-specific phospholipase C, Y domain
467756641Phosphatidylinositol-specific phospholipase C, X domain
69141876969D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
222222214Malic enzyme, N-terminal domain
111211186-phosphogluconate dehydrogenase, C-terminal domain
418232446685Multicopper oxidase
121111111011975WW domain
11111117Ribosomal RNA adenine dimethylase
11114Yeast PIR protein repeat
10410210211710899103735WD domain, G-beta repeat
566855540Heavy-metal-associated domain
334432322Adenylate kinase
212221212Phosphoglucomutase/phosphomannomutase, C-terminal domain
12211119Ribosomal protein S8
11111117Ribosomal protein S11
444443326LIM domain
112Matrixin
232422116Regulator of chromosome condensation (RCC1) repeat
222222214Ribosomal protein S13/S18
11
222223316chorismate binding enzyme
33343332260s Acidic ribosomal protein
444645532Prenyltransferase and squalene oxidase repeat
665665640Protein kinase C terminal domain
11111117Single-strand binding protein family
1111116S-adenosylmethionine synthetase, N-terminal domain
877777750Bromodomain
8111413991074Acyl-CoA dehydrogenase, C-terminal domain
1414141414131497Ubiquitin carboxyl-terminal hydrolase
111115Ribosomal protein L36
123212213Ribonuclease T2 family
333333321HSF-type DNA-binding
222222214SRP54-type protein, GTPase domain
1111116Urease alpha-subunit, N-terminal domain
510142067870Serine carboxypeptidase
11Apoptosis regulator proteins, Bcl-2 family
888887855Phosphatidylinositol 3- and 4-kinase
122412214Transketolase, thiamine diphosphate binding domain
664564536Glycosyl hydrolases family 11
344433425Inositol monophosphatase family
444544429Glutaredoxin
235623122Isocitrate lyase family
222222214Serine hydroxymethyltransferase
122212212Iron-containing alcohol dehydrogenase
222221213Ribosomal protein L10
333332320KOW motif
11111117Ribosomal protein L34
333332118RF-1 domain
323521319Sodium:solute symporter family
11111117Imidazoleglycerol-phosphate dehydratase
11111117DNA polymerase family A
11111117IMP dehydrogenase / GMP reductase domain
11111117Glucose-6-phosphate dehydrogenase, NAD binding domain
566654537Protein phosphatase 2C
222222214Nucleotidyl transferase
333332320Carbonic anhydrase
11111117Phosphoribulokinase / Uridine kinase family
567757744Fatty acid desaturase
666665641MutS domain V
11111117Delta-aminolevulinic acid dehydratase
247833330Arginase family
666666642MCM P-loop domain
122212212Squalene/phytoene synthase
112Bacterial extracellular solute-binding proteins, family 5 Middle
1198999863FHA domain
39445461344839319AMP-binding enzyme
333332320G-protein alpha subunit
8999107961HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
11Cytochrome c oxidase subunit III
81111129101374His Kinase A (phospho-acceptor) domain
332332218Armadillo/beta-catenin-like repeat
20272327221518152Tetratricopeptide repeat
334332523Ion transport protein
11111117DNA gyrase/topoisomerase IV, subunit A
9991010121271BRCA1 C Terminus (BRCT) domain
688857749Glycosyl transferases group 1
577866645Glycosyl transferase family 2
11111128SAM domain (Sterile alpha motif)
11111117linker histone H1 and H5 family
11111117Ribosomal protein L7/L12 C-terminal domain
2613142121463Pectate lyase
232532219ribonuclease
1111116Urease, gamma subunit
355533327CoA-ligase
21293039172215173Phosphopantetheine attachment site
444442426Formyl transferase
6910988757Metallopeptidase family M24
14151718151114104Leucine Rich Repeat
21425265232533261alpha/beta hydrolase fold
333333321RNA polymerase Rpb2, domain 6
444443427PB1 domain
222222214Staphylococcal nuclease homologue
1199101081067Rab-GTPase-TBC domain
11111117Tudor domain
21111118WH1 domain
354333324Zinc finger, ZZ type
111122210HRDC domain
91191098763CBS domain
222222214Ribosomal protein L13
222222214Ribosomal protein L4/L1 family
11111117Clp protease
543443427S1 RNA binding domain
11111117HIUase/Transthyretin family
245622223AhpC/TSA family
444444428tRNA synthetases class I (W and Y)
11114UvrD/REP helicase N-terminal domain
556564435Rhodanese-like domain
222221213Universal stress protein family
23425357262529255Acetyltransferase (GNAT) family
11111117SecE/Sec61-gamma subunits of protein translocation complex
11111117C-terminal regulatory domain of Threonine dehydratase
222222214AIR synthase related protein, N-terminal domain
888889958tRNA synthetase class II core domain (G, H, P, S and T)
11111117SpoU rRNA Methylase family
222221314Tetrapyrrole (Corrin/Porphyrin) Methylases
1111116Glycosyl transferase family, a/b domain
112217PDZ domain
279931233Class II Aldolase and Adducin N-terminal domain
444444428Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
445554532Fes/CIP4, and EFC/F-BAR homology domain
765455537IQ calmodulin-binding motif
222222214Phosphoinositide 3-kinase family, accessory domain (PIK domain)
464544633Phospholipase D Active site motif
122211110Regulator of G protein signaling domain
444444327GTPase-activator protein for Ras-like GTPase
444443326RasGEF domain
444443326RasGEF N-terminal motif
888888755RhoGAP domain
666666642RhoGEF domain
343323321SPRY domain
333333321RNA polymerase Rpb1, domain 2
322223317Guanylate kinase
344544529Gelsolin repeat
8998791060UBA/TS-N domain
14171418141413104PHD-finger
1111116GGL domain
666666642HECT-domain (ubiquitin-transferase)
122221111Helix-hairpin-helix motif
11111117MSP (Major sperm protein) domain
334543325Ribonuclease III domain
333333321Region in Clathrin and VPS
333233219RanBP1 domain
222222214PPIC-type PPIASE domain
333231318Zn-finger in Ran binding protein and others
1514181716913102Zinc finger C-x8-C-x5-C-x3-H type (and similar)
222222214Poly(ADP-ribose) polymerase catalytic domain
11111117Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
36395688362843326F-box domain
11111117Elongation factor 1 gamma, conserved domain
256523427Calpain family cysteine protease
112212211Copper fist DNA binding domain
465555636CRAL/TRIO domain
5761356749BTB/POZ domain
11111117Ricin-type beta-trefoil lectin domain
222221112Inhibitor of Apoptosis domain
344433324Voltage gated chloride channel
234422219Caspase domain
715242751316107GDSL-like Lipase/Acylhydrolase
11111117Poly-adenylate binding protein, unique domain
16293044152419177ABC transporter transmembrane region
112Integrase core domain
511131546660FAD binding domain
10141220711579Condensation domain
11111117S-adenosyl-L-homocysteine hydrolase, NAD binding domain
11111117HAMP domain
222222214ribosomal L5P family C-terminus
544554532Insulinase (Peptidase family M16)
334433323Dehydrogenase E1 component
1111116Lumazine binding domain
666665540Elongation factor G C-terminus
546755537HMGL-like
444443427DnaJ central domain
233324421Starch binding domain
232322216Ribosomal protein L1p/L10e family
1113151711111290Cation transporting ATPase, C-terminus
1115151913121398Cation transporter/ATPase, N-terminus
11111117dUTPase
456745435Aconitase C-terminal domain
344433324Amino acid kinase family
11111117N-(5'phosphoribosyl)anthranilate (PRA) isomerase
16452945151110171Acyl transferase domain
111115Urease beta subunit
58111749963Dihydrodipicolinate synthetase family
30395057343131272haloacid dehalogenase-like hydrolase
556966643Glycosyl hydrolases family 2
1421162581218114Glycosyl hydrolases family 18
11111117Proliferating cell nuclear antigen, N-terminal domain
11114Translation initiation factor IF-3, C-terminal domain
1111116Acylphosphatase
21111118Adenylosuccinate synthetase
134412217Asparaginase, N-terminal
332321115Peptidase S24-like
222222214Inorganic pyrophosphatase
815151788980Glycosyl hydrolases family 16
233324421Glycosyl hydrolases family 15
211141447860NADH:flavin oxidoreductase / NADH oxidase family
1454111173-hydroxyacyl-CoA dehydrogenase, C-terminal domain
133322317Glycosyl hydrolase family 20, catalytic domain
656452533HhH-GPD superfamily base excision DNA repair protein
11111117AIR carboxylase
12294047122625191GMC oxidoreductase
346732227Asparagine synthase
21202424171925150Fungal cellulose binding domain
555556536Septin
11111117EF-1 guanine nucleotide exchange domain
11111117Homoserine dehydrogenase
23111014334Flavin-binding monooxygenase-like
1113LPXTG cell wall anchor motif
333333321tRNA synthetases class I (E and Q), catalytic domain
122211110tRNA synthetases class I (R)
444444428XPG N-terminal domain
512222356881Metallo-beta-lactamase superfamily
11F5/8 type C domain
343322219Choline/Carnitine o-acyltransferase
112112210Putative esterase
11111117Ferrochelatase
223322216Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
121212110Arginosuccinate synthase
11111117Electron transfer flavoprotein FAD-binding domain
333333321RNB domain
38141654555Dioxygenase
323333219CNH domain
222221112Diacylglycerol kinase catalytic domain
777865444Dual specificity phosphatase, catalytic domain
233322217P21-Rho-binding domain
1211111212111180PX domain
333332219Ras association (RalGDS/AF-6) domain
455554432UBX domain
444443427VHS domain
11111117Phosphoinositide 3-kinase C2
222221213DAHP synthetase I family
6111617671073Carbon-nitrogen hydrolase
11221119N-acetyltransferase
11111117Prephenate dehydratase
213PKD domain
455554432Syntaxin
555554534Pumilio-family RNA binding repeat
666764540Histone-like transcription factor (CBF/NF-Y) and archaeal histone
11111117Pterin binding enzyme
222222214ER lumen protein retaining receptor
222221213tRNA N6-adenosine threonylcarbamoyltransferase
112213212Histidinol dehydrogenase
445544430impB/mucB/samB family
11111117
11111117Ribosomal L15
11111117Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
1111116Ribosomal L28 family
11111117Ribosomal L29 protein
11111117Ribosomal L39 protein
11111117Ribosomal S17
11111117Ribulose-phosphate 3 epimerase family
11111117Translationally controlled tumour protein
467736538Glycosyl hydrolase family 7
11111117RNA pseudouridylate synthase
444444428Histone deacetylase domain
175622225POT family
1111116PWWP domain
1217181411111396SET domain
4791044644Isochorismatase family
233332319Permease family
11