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PFAM Domains • Scheffersomyces stipitis NRRL Y-7124 v1.0
Annotations/GenomesCanalb1Lodelo1Picst3Schcoi1Schque1Schsti1Spaarb1TotalAnnotation Description
PFAMs
6,6376,0974,5716,7216,6566,7546,43043,866
32332834323133223ATPase family associated with various cellular activities (AAA)
26303135343131218ABC transporter
444444428ATP synthase alpha/beta family, nucleotide-binding domain
1413141514141498Elongation factor Tu GTP binding domain
977989958Helix-loop-helix DNA-binding domain
1111127Hsp20/alpha crystallin family
9912167161079Hsp70 protein
548566741KH domain
11SH2 domain
17172214151414113SH3 domain
101081110111070Actin
2214233127Ankyrin repeat
767777647ADP-ribosylation factor family
13796681665Eukaryotic aspartyl protease
324333321Cyclic nucleotide-binding domain
11Cytochrome b(C-terminal)/b6/petD
11111117Cytochrome c
211121412Double-stranded RNA binding motif
1313EF hand
11134Fe-4S binding domain
11Fibronectin type III domain
422222620Globin
10821084547Glutathione S-transferase, C-terminal domain
114224115Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
323332117Homeodomain
333333321lactate/malate dehydrogenase, NAD binding domain
333223117Myosin head (motor domain)
1091081211969Cytochrome P450
9595951131129795702Protein kinase domain
1078889757Pyridine nucleotide-disulphide oxidoreductase
21212321212321151Ras family
786676646Response regulator receiver domain
321521216RNase H
39384738424337284RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
72431Reverse transcriptase (RNA-dependent DNA polymerase)
423444425Copper/zinc superoxide dismutase (SODC)
212222213Iron/manganese superoxide dismutases, alpha-hairpin domain
544764636Subtilase family
31296043435038294Sugar (and other) transporter
910999111067Thioredoxin
11Trypsin
333334322Tubulin/FtsZ family, GTPase domain
13104915151418134Zinc finger, C2H2 type
3124223237Zinc finger, C3HC4 type (RING finger)
495222226Zinc knuckle
332432421Protein-tyrosine phosphatase
20173142352524194short chain dehydrogenase
21162426232120151Zinc-binding dehydrogenase
434554429Thiolase, N-terminal domain
222222214Beta-ketoacyl synthase, N-terminal domain
113111192Fe-2S iron-sulfur cluster binding domain
11122119Enolase, C-terminal TIM barrel domain
325Cytochrome C and Quinol oxidase polypeptide I
11Cytochrome C oxidase subunit II, periplasmic domain
887888855Glutamine amidotransferase class-I
1012101010101072TCP-1/cpn60 chaperonin family
11ATP synthase A chain
11111117Glutamine synthetase, catalytic domain
11111218Triosephosphate isomerase
1513111515171399E1-E2 ATPase
1110111111111176Core histone H2A/H2B/H3/H4
326337327Alpha amylase, catalytic domain
11111117Phorbol esters/diacylglycerol binding domain (C1 domain)
645665638Bacterial transferase hexapeptide (six repeats)
567555538tRNA synthetases class I (I, L, M and V)
1211111111111178Cyclin, N-terminal domain
444444428DNA polymerase family B
3331143330ATP synthase subunit C
222222113Peroxidase
11211219Beta-lactamase
11NADH dehydrogenase
19191820181918131Calcineurin-like phosphoesterase
444667536Cellulase (glycosyl hydrolase family 5)
666666642tRNA synthetases class II (D, K and N)
33333433333432232Mitochondrial carrier protein
1513101515171297Aminotransferase class I and II
448444432Phosphoribosyl transferase domain
668999956Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11111117Phosphoglycerate kinase
222222214Ribosomal protein S4/S9 N-terminal domain
222222214Ribosomal protein S12/S23
112Bacterial regulatory helix-turn-helix proteins, AraC family
1111116Chaperonin 10 Kd subunit
789999758C2 domain
10715910101273PH domain
675667744bZIP transcription factor
1112101010111074Aldehyde dehydrogenase family
78548585939064549Fungal Zn(2)-Cys(6) binuclear cluster domain
1212141213131389Cytochrome b5-like Heme/Steroid binding domain
977987754Oxidoreductase NAD-binding domain
17161818181818123SNF2 family N-terminal domain
222222113Ribosomal protein S7p/S5e
1313131614131395Ubiquitin-conjugating enzyme
666666642Isocitrate/isopropylmalate dehydrogenase
223333319Ribosomal Proteins L2, RNA binding domain
11111117Hsp90 protein
222222214Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
11111117Dihydrofolate reductase
553444631Cysteine-rich secretory protein family
11111117Ribosomal protein S3, C-terminal domain
11Cupin
2221222132-oxoacid dehydrogenases acyltransferase (catalytic domain)
11111117Catalase
111115UDP-glucoronosyl and UDP-glucosyl transferase
647667440Aminotransferase class-III
222222214Ribosomal protein S19
11111117DNA gyrase B
333333422Thiamine pyrophosphate enzyme, central domain
444444428Lyase
222222214Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
11111117Adenylate and Guanylate cyclase catalytic domain
11111117ATP synthase delta (OSCP) subunit
11111117Orotidine 5'-phosphate decarboxylase / HUMPS family
11111117Indole-3-glycerol phosphate synthase
11Neurohypophysial hormones, N-terminal Domain
11111117Pyruvate kinase, barrel domain
656666641Kinesin motor domain
23212423232225161DnaJ domain
1414141414141498Proteasome subunit
11121118Major intrinsic protein
11111117ATP synthase
111111173'5'-cyclic nucleotide phosphodiesterase
11111117Profilin
221222213Ribosomal protein L22p/L17e
222122112Ribosomal protein L14p/L23e
876666746Ubiquitin family
423444425Cofilin/tropomyosin-type actin-binding protein
1111111714-3-3 protein
222233115Alkaline phosphatase
11111117Zinc carboxypeptidase
15111719201815115Aldo/keto reductase family
6712758954Myb-like DNA-binding domain
333233421Forkhead domain
221222314Ribosomal protein L16p/L10e
221222213Ribosomal protein S14p/S29e
333333321FKBP-type peptidyl-prolyl cis-trans isomerase
422222216Glutathione peroxidase
11
448455434Flavodoxin
11111117Calreticulin family
553556736Aminotransferase class-V
21111118Ribonucleotide reductase, small chain
41393735353635258DEAD/DEAH box helicase
59585656555557396Helicase conserved C-terminal domain
1111116EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
222222214Ribosomal protein L23
11111117Pyridoxal-dependent decarboxylase, C-terminal sheet domain
11111117Ribosomal protein L5
333333321Pyridoxal-dependent decarboxylase conserved domain
11111117Citrate synthase, C-terminal domain
544555432GHMP kinases N terminal domain
555665537Biotin carboxylase, N-terminal domain
11111117Tryptophan synthase alpha chain
888888856Pyridoxal-phosphate dependent enzyme
888778854NUDIX domain
452444427pfkB family carbohydrate kinase
22122312Luciferase-like monooxygenase
222222214Ribosomal protein L3
222222214Ribosomal protein L11, RNA binding domain
161581414151597Histidine phosphatase superfamily (branch 1)
11111117Thymidylate synthase
444444428ATP synthase alpha/beta chain, C terminal domain
425445327Calponin homology (CH) domain
324333321Glutamine amidotransferases class-II
222222214Ribosomal protein S15
1111116Fructose-1-6-bisphosphatase, N-terminal domain
222222315Ribonucleotide reductase, all-alpha domain
222222214Ribosomal protein S2
222742221SRF-type transcription factor (DNA-binding and dimerisation domain)
889899859GATA zinc finger
23223624222522174Amino acid permease
222222113Prolyl oligopeptidase family
332333320Ribosomal protein L30p/L7e
443655532Histidine phosphatase superfamily (branch 2)
11111117Respiratory-chain NADH dehydrogenase, 30 Kd subunit
445455431Aconitase family (aconitate hydratase)
112Glycosyl hydrolase family 10
432343322Glycosyl hydrolases family 17
222222214Ribosomal protein S5, N-terminal domain
11111117Nucleoside diphosphate kinase
221222213Ribosomal protein S10p/S20e
552555431Arrestin (or S-antigen), N-terminal domain
11111117Phosphoglucose isomerase
12111118Carbohydrate phosphorylase
222122213SecY translocase
11111117Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222222214Ribosomal protein L6
333333321Polyprenyl synthetase
433333322Hexokinase
443444427Dynamin family
11111117Transcription factor TFIID (or TATA-binding protein, TBP)
222222113Rieske [2Fe-2S] domain
74112Proton-conducting membrane transporter
666666642Biotin-requiring enzyme
222222214Phosphofructokinase
212222213Ribosomal protein S17
11111117Hydroxymethylglutaryl-coenzyme A reductase
333333321FGGY family of carbohydrate kinases, N-terminal domain
423333422Enoyl-CoA hydratase/isomerase
222222214Ribosomal protein S9/S16
322442320Transcription factor TFIIB repeat
666666642Cytidine and deoxycytidylate deaminase zinc-binding region
11111117Molybdopterin oxidoreductase
221222213Chromo (CHRromatin Organisation MOdifier) domain
11111117Phosphatidylinositol-specific phospholipase C, Y domain
322222215Phosphatidylinositol-specific phospholipase C, X domain
954556640D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
12111118Malic enzyme, N-terminal domain
111111176-phosphogluconate dehydrogenase, C-terminal domain
532222319Multicopper oxidase
667667644WW domain
222222214Ribosomal RNA adenine dimethylase
224Yeast PIR protein repeat
83808488878686594WD domain, G-beta repeat
445445430Heavy-metal-associated domain
333333220Adenylate kinase
222332317Phosphoglucomutase/phosphomannomutase, C-terminal domain
322333319Ribosomal protein S8
11122119Ribosomal protein S11
333433221LIM domain
221222314Regulator of chromosome condensation (RCC1) repeat
222222214Ribosomal protein S13/S18
22NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
222222214chorismate binding enzyme
55555553560s Acidic ribosomal protein
434233322Prenyltransferase and squalene oxidase repeat
444444428Protein kinase C terminal domain
11111117Single-strand binding protein family
11111117S-adenosylmethionine synthetase, N-terminal domain
989999962Bromodomain
223222215Acyl-CoA dehydrogenase, C-terminal domain
14131614151415101Ubiquitin carboxyl-terminal hydrolase
11111117Ribosomal protein L36
332222115Ribonuclease T2 family
444444428HSF-type DNA-binding
222222214SRP54-type protein, GTPase domain
454444328Serine carboxypeptidase
868878853Phosphatidylinositol 3- and 4-kinase
11211118Transketolase, thiamine diphosphate binding domain
211221110Inositol monophosphatase family
674676642Glutaredoxin
11111117Isocitrate lyase family
222222214Serine hydroxymethyltransferase
322223317Ribosomal protein L10
346333426KOW motif
11111117Ribosomal protein L34
333333220RF-1 domain
646557437Sodium:solute symporter family
1111116Imidazoleglycerol-phosphate dehydratase
11111117DNA polymerase family A
11111117IMP dehydrogenase / GMP reductase domain
11111117Glucose-6-phosphate dehydrogenase, NAD binding domain
666666642Protein phosphatase 2C
432443323Nucleotidyl transferase
212222314Carbonic anhydrase
242323218Phosphoribulokinase / Uridine kinase family
666666541Fatty acid desaturase
664644434MutS domain V
11111117Delta-aminolevulinic acid dehydratase
323233319Arginase family
676666643MCM P-loop domain
221222213Squalene/phytoene synthase
996877955FHA domain
10121099111071AMP-binding enzyme
222222214G-protein alpha subunit
445444429HMG (high mobility group) box
55NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
11Cytochrome c oxidase subunit III
342232218His Kinase A (phospho-acceptor) domain
222122112Armadillo/beta-catenin-like repeat
109141313101281Tetratricopeptide repeat
1113Papillomavirus helicase
123111110Ion transport protein
11111117DNA gyrase/topoisomerase IV, subunit A
9798791059BRCA1 C Terminus (BRCT) domain
334333322Glycosyl transferases group 1
222222214Glycosyl transferase family 2
11SAM domain (Sterile alpha motif)
1111116linker histone H1 and H5 family
1111116Ribosomal protein L7/L12 C-terminal domain
222222214CoA-ligase
333333321Phosphopantetheine attachment site
222222113Formyl transferase
986999959Metallopeptidase family M24
62297492279Leucine Rich Repeat
4319555647alpha/beta hydrolase fold
333333422RNA polymerase Rpb2, domain 6
222222214PB1 domain
222222214Staphylococcal nuclease homologue
10981110111069Rab-GTPase-TBC domain
11111117Tudor domain
11111117WH1 domain
222122213Zinc finger, ZZ type
21111118HRDC domain
777776748CBS domain
222222214Ribosomal protein L13
221222213Ribosomal protein L4/L1 family
442333322S1 RNA binding domain
11111117HIUase/Transthyretin family
446444430AhpC/TSA family
444444428tRNA synthetases class I (W and Y)
222222214UvrD/REP helicase N-terminal domain
674667743Rhodanese-like domain
221123112Universal stress protein family
1391312981276Acetyltransferase (GNAT) family
1111116SecE/Sec61-gamma subunits of protein translocation complex
11111117C-terminal regulatory domain of Threonine dehydratase
222221213AIR synthase related protein, N-terminal domain
778677749tRNA synthetase class II core domain (G, H, P, S and T)
222222214SpoU rRNA Methylase family
322223216Tetrapyrrole (Corrin/Porphyrin) Methylases
11111117Glycosyl transferase family, a/b domain
111115PDZ domain
322222215Class II Aldolase and Adducin N-terminal domain
543444428Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
534444428Fes/CIP4, and EFC/F-BAR homology domain
1131118IQ calmodulin-binding motif
222223215Phosphoinositide 3-kinase family, accessory domain (PIK domain)
11211118Phospholipase D Active site motif
531555529Regulator of G protein signaling domain
333333321GTPase-activator protein for Ras-like GTPase
444444428RasGEF domain
441443424RasGEF N-terminal motif
9108889759RhoGAP domain
332333320RhoGEF domain
323232318SPRY domain
333333422RNA polymerase Rpb1, domain 2
11111117Guanylate kinase
333322218Gelsolin repeat
654665739UBA/TS-N domain
910141110111277PHD-finger
1113GGL domain
555555535HECT-domain (ubiquitin-transferase)
1113Helix-hairpin-helix motif
11111117MSP (Major sperm protein) domain
222222416Ribonuclease III domain
532222319Region in Clathrin and VPS
333333321RanBP1 domain
11211219PPIC-type PPIASE domain
11111117Zn-finger in Ran binding protein and others
857776444Zinc finger C-x8-C-x5-C-x3-H type (and similar)
3215744742F-box domain
221121211Elongation factor 1 gamma, conserved domain
111115Calpain family cysteine protease
222222214Copper fist DNA binding domain
555555636CRAL/TRIO domain
33212213BTB/POZ domain
11111117Inhibitor of Apoptosis domain
333333321Voltage gated chloride channel
112112210Caspase domain
2114GDSL-like Lipase/Acylhydrolase
11111117Poly-adenylate binding protein, unique domain
11111117POLO box duplicated region
12222110Seripauperin and TIP1 family
11NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
813141717141396ABC transporter transmembrane region
422228Integrase core domain
333333321FAD binding domain
11111117S-adenosyl-L-homocysteine hydrolase, NAD binding domain
11111117HAMP domain
222222214ribosomal L5P family C-terminus
887877853Insulinase (Peptidase family M16)
222222214Dehydrogenase E1 component
11111117Lumazine binding domain
656766642Elongation factor G C-terminus
555665537HMGL-like
545555534DnaJ central domain
442444426Ribosomal protein L1p/L10e family
535665535Cation transporting ATPase, C-terminus
554655434Cation transporter/ATPase, N-terminus
1113dUTPase
445455431Aconitase C-terminal domain
333333321Amino acid kinase family
11111117N-(5'phosphoribosyl)anthranilate (PRA) isomerase
222222214Acyl transferase domain
3137Dihydrodipicolinate synthetase family
10918910111077haloacid dehalogenase-like hydrolase
13233113Glycosyl hydrolases family 2
124443523Glycosyl hydrolases family 18
11111117Proliferating cell nuclear antigen, N-terminal domain
11111117Adenylosuccinate synthetase
11111117Asparaginase, N-terminal
331333319Peptidase S24-like
222222214Inorganic pyrophosphatase
333333321Glycosyl hydrolases family 16
11111117Glycosyl hydrolases family 15
9813101013871NADH:flavin oxidoreductase / NADH oxidase family
11111117Glycosyl hydrolase family 20, catalytic domain
333333321HhH-GPD superfamily base excision DNA repair protein
11111117AIR carboxylase
112112210GMC oxidoreductase
221222213Asparagine synthase
757777747Septin
11111117EF-1 guanine nucleotide exchange domain
11111117Homoserine dehydrogenase
34743223Flavin-binding monooxygenase-like
333433322tRNA synthetases class I (E and Q), catalytic domain
11111117tRNA synthetases class I (R)
553344327XPG N-terminal domain
222222214Metallo-beta-lactamase superfamily
343333322Choline/Carnitine o-acyltransferase
11111117Putative esterase
11111117Ferrochelatase
333333321Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
11111117Arginosuccinate synthase
1111116Electron transfer flavoprotein FAD-binding domain
433334424RNB domain
212222213Dioxygenase
322333218CNH domain
221122212Diacylglycerol kinase catalytic domain
855787646Dual specificity phosphatase, catalytic domain
221212212P21-Rho-binding domain
1411131415151395PX domain
222222214Ras association (RalGDS/AF-6) domain
555555535UBX domain
443454428VHS domain
11111117Phosphoinositide 3-kinase C2
222333318DAHP synthetase I family
447778441Carbon-nitrogen hydrolase
11111117Prephenate dehydratase
213114113Syntaxin
456554433Pumilio-family RNA binding repeat
765777746Histone-like transcription factor (CBF/NF-Y) and archaeal histone
11111117Pterin binding enzyme
11111117ER lumen protein retaining receptor
222222214tRNA N6-adenosine threonylcarbamoyltransferase
11111117Histidinol dehydrogenase
222222214impB/mucB/samB family
11
11111117Ribosomal L15
331333319Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
112Ribosomal prokaryotic L21 protein
11111117Ribosomal L28 family
11111117Ribosomal L29 protein
11111117Ribosomal L39 protein
11111117Ribosomal S17
11111117Ribulose-phosphate 3 epimerase family
11111117Translationally controlled tumour protein
111115Ring hydroxylating alpha subunit (catalytic domain)
323223318RNA pseudouridylate synthase
666666642Histone deacetylase domain
224333219POT family
222222214PWWP domain
865666643SET domain
11111117Isochorismatase family
1111116Permease family
11111117Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
554444430XPG I-region
11111117Sulfatase
11111166,7-dimethyl-8-ribityllumazine synthase
11111117Ribosomal protein S16
222222214Acyl CoA binding protein
453444428Cullin family
443333424FAD binding domain
331333319EamA-like transporter family
11
888888856ThiF family
222222214Ribosomal family S4e
212222213Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
323333219Ammonium Transporter Family
334444426Sulfate permease family
11111117MATH domain
11111117Dehydratase family
11111117Transaldolase/Fructose-6-phosphate aldolase
11111117GTP cyclohydrolase II
111111173,4-dihydroxy-2-butanone 4-phosphate synthase
553555432Adaptor complexes medium subunit family
655666842Exonuclease
222222113Dipeptidyl peptidase IV (DPP IV) N-terminal region
318899644Glycosyl hydrolase family 3 N terminal domain
11111117Ribosomal protein L44
222222214Sodium:sulfate symporter transmembrane region
222222214DNA-dependent RNA polymerase
11111117Glycosyl transferase family 4
141111110HCO3- transporter family
222222214Nucleosome assembly protein (NAP)
444444428Synaptobrevin
11111117GMP synthase C terminal domain
11LAGLIDADG endonuclease
222222113Adenosine/AMP deaminase
754765539Oxidoreductase FAD-binding domain
222222214Histidine biosynthesis protein