PFAM Domains • Lindgomyces ingoldianus ATCC 200398 v1.0
Annotations/GenomesAaoar1Amnli1Corca1Delco1Linin1Polfu1Trepe1TotalAnnotation Description
PFAMs
10,1239,42010,9497,5929,6279,75610,38267,849
1127 transmembrane receptor (rhodopsin family)
50555945546276401ATPase family associated with various cellular activities (AAA)
58505533594353351ABC transporter
444444428ATP synthase alpha/beta family, nucleotide-binding domain
112EGF-like domain
1415131414141498Elongation factor Tu GTP binding domain
1013121011101278Helix-loop-helix DNA-binding domain
333443323Hsp20/alpha crystallin family
978878855Hsp70 protein
8108888858KH domain
11Ribulose bisphosphate carboxylase large chain, catalytic domain
11111117SH2 domain
22222321232224157SH3 domain
1010101010101070Actin
7111310650129122119710Ankyrin repeat
256125324PAN domain
777787851ADP-ribosylation factor family
101212615111682Eukaryotic aspartyl protease
444444428Cyclic nucleotide-binding domain
11111117Cytochrome c
111131210Double-stranded RNA binding motif
17201617182017125EF hand
111111174Fe-4S binding domain
333222318Fibronectin type III domain
11111117Globin
14181913121916111Glutathione S-transferase, C-terminal domain
21111118Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
10910612111068Homeodomain
533333323lactate/malate dehydrogenase, NAD binding domain
112Low-density lipoprotein receptor repeat class B
11Lectin C-type domain
454544430Myosin head (motor domain)
134135230951531561861,089Cytochrome P450
1641961491071631452541,178Protein kinase domain
14232516182321140Pyridine nucleotide-disulphide oxidoreductase
24242523272728178Ras family
22242115211820141Response regulator receiver domain
22165521RNase H
57606062585765419RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
333233219Copper/zinc superoxide dismutase (SODC)
222222214Iron/manganese superoxide dismutases, alpha-hairpin domain
141715710141390Subtilase family
1397112545798091630Sugar (and other) transporter
1311101111121179Thioredoxin
214211112Trypsin
444444428Tubulin/FtsZ family, GTPase domain
356295535von Willebrand factor type A domain
75719057747787531Zinc finger, C2H2 type
608765464753102460Zinc finger, C3HC4 type (RING finger)
494738944Zinc knuckle
242222317Protein-tyrosine phosphatase
179164224961581821851,188short chain dehydrogenase
86739841928385558Zinc-binding dehydrogenase
766666643Thiolase, N-terminal domain
23273618411922186Beta-ketoacyl synthase, N-terminal domain
7666667442Fe-2S iron-sulfur cluster binding domain
11125Papain family cysteine protease
11111128Enolase, C-terminal TIM barrel domain
11Cytochrome C and Quinol oxidase polypeptide I
1089988860Glutamine amidotransferase class-I
1010101010101070TCP-1/cpn60 chaperonin family
433344324Glutamine synthetase, catalytic domain
222222214Triosephosphate isomerase
20172213161917124E1-E2 ATPase
778878752Core histone H2A/H2B/H3/H4
1113Copper binding proteins, plastocyanin/azurin family
108858101059Alpha amylase, catalytic domain
222221213Phorbol esters/diacylglycerol binding domain (C1 domain)
687756746Bacterial transferase hexapeptide (six repeats)
534343325tRNA synthetases class I (I, L, M and V)
778777750Cyclin, N-terminal domain
33274418273331213Carboxylesterase family
444444428DNA polymerase family B
444444428ATP synthase subunit C
5797891055Peroxidase
1410244172124114Beta-lactamase
443223321C-5 cytosine-specific DNA methylase
29322621262829191Calcineurin-like phosphoesterase
1612141415121598Cellulase (glycosyl hydrolase family 5)
777787750tRNA synthetases class II (D, K and N)
43414338414143290Mitochondrial carrier protein
11recA bacterial DNA recombination protein
29192313201819141Aminotransferase class I and II
9898109962Phosphoribosyl transferase domain
1011101011101072Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11111117Phosphoglycerate kinase
223222215Ribosomal protein S4/S9 N-terminal domain
222222214Ribosomal protein S12/S23
1112117Bacterial regulatory helix-turn-helix proteins, AraC family
11111117Chaperonin 10 Kd subunit
1212131112111283C2 domain
19181818181818127PH domain
1188687856bZIP transcription factor
40203116202326176Aldehyde dehydrogenase family
3322043031171922212341,603Fungal Zn(2)-Cys(6) binuclear cluster domain
25232820242124165Cytochrome b5-like Heme/Steroid binding domain
535333325Oxidoreductase molybdopterin binding domain
20162811171616124Oxidoreductase NAD-binding domain
27262924282826188SNF2 family N-terminal domain
222222214Ribosomal protein S7p/S5e
25242422282426173Ubiquitin-conjugating enzyme
1079677652Isocitrate/isopropylmalate dehydrogenase
222222214Ribosomal Proteins L2, RNA binding domain
11111117Hsp90 protein
222222214Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
11111117Dihydrofolate reductase
811651016763Chitin recognition protein
436333325Cysteine-rich secretory protein family
11111117Ribosomal protein S3, C-terminal domain
556755740Cupin
222222214Annexin
11211129Eukaryotic-type carbonic anhydrase
11114Chalcone and stilbene synthases, N-terminal domain
3343333222-oxoacid dehydrogenases acyltransferase (catalytic domain)
556544635Catalase
11111117Disintegrin
1121117UDP-glucoronosyl and UDP-glucosyl transferase
11108677958Aminotransferase class-III
222222214Ribosomal protein S19
11111117DNA gyrase B
9610488853Thiamine pyrophosphate enzyme, central domain
545444430Lyase
222222214Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
23117Sodium:neurotransmitter symporter family
11111117Adenylate and Guanylate cyclase catalytic domain
11111117ATP synthase delta (OSCP) subunit
12111118Orotidine 5'-phosphate decarboxylase / HUMPS family
11111117Indole-3-glycerol phosphate synthase
112231212Aromatic amino acid lyase
11111117Pyruvate kinase, barrel domain
1210101010101072Kinesin motor domain
32363228283543234DnaJ domain
1414141414141498Proteasome subunit
8684571048Major intrinsic protein
11111117ATP synthase
624342324Glycosyl hydrolase family 1
111111173'5'-cyclic nucleotide phosphodiesterase
11111117Profilin
11111117Ribosomal protein L22p/L17e
222222214Ribosomal protein L14p/L23e
1213101015111283Ubiquitin family
547544433Cofilin/tropomyosin-type actin-binding protein
22222221414-3-3 protein
457556537Alkaline phosphatase
769426337Zinc carboxypeptidase
35284125393343244Aldo/keto reductase family
12141919121418108Myb-like DNA-binding domain
444444428Forkhead domain
43213215Glycosyl hydrolases family 32 N-terminal domain
11111117Ribosomal protein L16p/L10e
322222417Ribosomal protein S14p/S29e
545444430FKBP-type peptidyl-prolyl cis-trans isomerase
11111117Glutathione peroxidase
22111119
97136108861Flavodoxin
11111117Calreticulin family
15202412131813115Common central domain of tyrosinase
867898854Aminotransferase class-V
11111117Ribonucleotide reductase, small chain
41363837413940272DEAD/DEAH box helicase
78697670827676527Helicase conserved C-terminal domain
11111117EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
122222213Ribosomal protein L23
11111117Pyridoxal-dependent decarboxylase, C-terminal sheet domain
122222213Ribosomal protein L5
666677745Pyridoxal-dependent decarboxylase conserved domain
323323319Citrate synthase, C-terminal domain
556555637GHMP kinases N terminal domain
878777751Biotin carboxylase, N-terminal domain
21111118Tryptophan synthase alpha chain
1310121110101177Pyridoxal-phosphate dependent enzyme
14161514161819112NUDIX domain
755576944pfkB family carbohydrate kinase
51012496955Glycosyl hydrolases family 28
1124Luciferase-like monooxygenase
222222214Ribosomal protein L3
222222315Ribosomal protein L11, RNA binding domain
15161512161317104Histidine phosphatase superfamily (branch 1)
11111117Thymidylate synthase
11Lipoxygenase
444444428ATP synthase alpha/beta chain, C terminal domain
555555535Calponin homology (CH) domain
445565433Glutamine amidotransferases class-II
222222214Ribosomal protein S15
11'Cold-shock' DNA-binding domain
11112118Thaumatin family
222212213Fructose-1-6-bisphosphatase, N-terminal domain
11111117Ribonucleotide reductase, all-alpha domain
222222214Ribosomal protein S2
212222213SRF-type transcription factor (DNA-binding and dimerisation domain)
766667745GATA zinc finger
55535739615658379Amino acid permease
559455538Prolyl oligopeptidase family
323233218Ribosomal protein L30p/L7e
101111811111274Histidine phosphatase superfamily (branch 2)
11111117Respiratory-chain NADH dehydrogenase, 30 Kd subunit
656545435Aconitase family (aconitate hydratase)
655455535Glycosyl hydrolase family 10
231442319Glycosyl hydrolases family 17
222222214Ribosomal protein S5, N-terminal domain
11111117Nucleoside diphosphate kinase
112Tetraspanin family
1111116Ribosomal protein S10p/S20e
556475537Arrestin (or S-antigen), N-terminal domain
11111117Phosphoglucose isomerase
11111117Carbohydrate phosphorylase
11111117SecY translocase
11111117Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222222214Ribosomal protein L6
335453427Polyprenyl synthetase
555554534Hexokinase
8107689654Dynamin family
11Biopterin-dependent aromatic amino acid hydroxylase
111114110Transcription factor TFIID (or TATA-binding protein, TBP)
658464639Rieske [2Fe-2S] domain
2114Phytochrome region
9810988961Biotin-requiring enzyme
11111117Phosphofructokinase
212212212Ribosomal protein S17
114121111Hydroxymethylglutaryl-coenzyme A reductase
333333321FGGY family of carbohydrate kinases, N-terminal domain
11114Sodium:dicarboxylate symporter family
171114914151494Enoyl-CoA hydratase/isomerase
222222214Ribosomal protein S9/S16
222223215Transcription factor TFIIB repeat
876668849Cytidine and deoxycytidylate deaminase zinc-binding region
11111117Molybdopterin oxidoreductase
465666841Chromo (CHRromatin Organisation MOdifier) domain
333233320Phosphatidylinositol-specific phospholipase C, Y domain
333253322Phosphatidylinositol-specific phospholipase C, X domain
1491481191277D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
222222214Malic enzyme, N-terminal domain
11PEP-utilising enzyme, mobile domain
1122122116-phosphogluconate dehydrogenase, C-terminal domain
12132015161517108Multicopper oxidase
8131099101069WW domain
11111117Ribosomal RNA adenine dimethylase
212212212Yeast PIR protein repeat
116110115118138130111838WD domain, G-beta repeat
756454536Heavy-metal-associated domain
355353630Adenylate kinase
223223216Phosphoglucomutase/phosphomannomutase, C-terminal domain
222121212Ribosomal protein S8
222231113Ribosomal protein S11
444446430LIM domain
221121312Matrixin
221121211Regulator of chromosome condensation (RCC1) repeat
222222214Ribosomal protein S13/S18
11
223332217chorismate binding enzyme
44345542960s Acidic ribosomal protein
645445533Prenyltransferase and squalene oxidase repeat
656686744Protein kinase C terminal domain
11111117Single-strand binding protein family
11111117S-adenosylmethionine synthetase, N-terminal domain
887798754Bromodomain
16161614161616110Acyl-CoA dehydrogenase, C-terminal domain
14151616141714106Ubiquitin carboxyl-terminal hydrolase
11111117Ribosomal protein L36
222222214Ribonuclease T2 family
323232318HSF-type DNA-binding
222222214SRP54-type protein, GTPase domain
11111117Urease alpha-subunit, N-terminal domain
1014121111151386Serine carboxypeptidase
112Apoptosis regulator proteins, Bcl-2 family
888888856Phosphatidylinositol 3- and 4-kinase
424122419Transketolase, thiamine diphosphate binding domain
444467534Glycosyl hydrolases family 11
755455536Inositol monophosphatase family
444444428Glutaredoxin
436355430Isocitrate lyase family
222222315Serine hydroxymethyltransferase
445443428Iron-containing alcohol dehydrogenase
222222214Ribosomal protein L10
454354429KOW motif
1111116Ribosomal protein L34
322223216RF-1 domain
434234323Sodium:solute symporter family
11111117Imidazoleglycerol-phosphate dehydratase
11111117DNA polymerase family A
11111117IMP dehydrogenase / GMP reductase domain
11111117Glucose-6-phosphate dehydrogenase, NAD binding domain
666666642Protein phosphatase 2C
233333421Nucleotidyl transferase
334355427Carbonic anhydrase
11111117Phosphoribulokinase / Uridine kinase family
758457743Fatty acid desaturase
666666642MutS domain V
11111117Delta-aminolevulinic acid dehydratase
647445434Arginase family
666666642MCM P-loop domain
222232215Squalene/phytoene synthase
81097771159FHA domain
54476541855053395AMP-binding enzyme
445447533G-protein alpha subunit
979979858HMG (high mobility group) box
18211812181516118His Kinase A (phospho-acceptor) domain
334343323Armadillo/beta-catenin-like repeat
30233431423335228Tetratricopeptide repeat
345353528Ion transport protein
11111117DNA gyrase/topoisomerase IV, subunit A
1313121211121386BRCA1 C Terminus (BRCT) domain
786787750Glycosyl transferases group 1
348343328Glycosyl transferase family 2
123433420SAM domain (Sterile alpha motif)
11111117linker histone H1 and H5 family
11111117Ribosomal protein L7/L12 C-terminal domain
8516112336Pectate lyase
11121118ribonuclease
11111117Urease, gamma subunit
444444428CoA-ligase
19183625392023180Phosphopantetheine attachment site
333333321Formyl transferase
10910789962Metallopeptidase family M24
1312141114151493Leucine Rich Repeat
49397129456751351alpha/beta hydrolase fold
333333422RNA polymerase Rpb2, domain 6
343433323PB1 domain
222222214Staphylococcal nuclease homologue
1212111212111181Rab-GTPase-TBC domain
11111117Tudor domain
11111117WH1 domain
446445330Zinc finger, ZZ type
333232319HRDC domain
91098108963CBS domain
222222214Ribosomal protein L13
222222214Ribosomal protein L4/L1 family
11111117Clp protease
222422216S1 RNA binding domain
11111117HIUase/Transthyretin family
574444735AhpC/TSA family
444444529tRNA synthetases class I (W and Y)
11111117UvrD/REP helicase N-terminal domain
564465636Rhodanese-like domain
222222214Universal stress protein family
52515335504854343Acetyltransferase (GNAT) family
11111117SecE/Sec61-gamma subunits of protein translocation complex
11111117C-terminal regulatory domain of Threonine dehydratase
222222214AIR synthase related protein, N-terminal domain
8888108858tRNA synthetase class II core domain (G, H, P, S and T)
222222214SpoU rRNA Methylase family
222222214Tetrapyrrole (Corrin/Porphyrin) Methylases
11111128Glycosyl transferase family, a/b domain
21111118PDZ domain
1079476851Class II Aldolase and Adducin N-terminal domain
444344427Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
555544533Fes/CIP4, and EFC/F-BAR homology domain
444545430IQ calmodulin-binding motif
222222214Phosphoinositide 3-kinase family, accessory domain (PIK domain)
655656538Phospholipase D Active site motif
11111117Regulator of G protein signaling domain
333333321GTPase-activator protein for Ras-like GTPase
444444428RasGEF domain
444444428RasGEF N-terminal motif
898888857RhoGAP domain
666666743RhoGEF domain
352223320SPRY domain
333333321RNA polymerase Rpb1, domain 2
11111128Guanylate kinase
544454430Gelsolin repeat
118108881063UBA/TS-N domain
18171818181619124PHD-finger
11111117GGL domain
555555535HECT-domain (ubiquitin-transferase)
111321110Helix-hairpin-helix motif
11111117MSP (Major sperm protein) domain
469666744Ribonuclease III domain
222222214Region in Clathrin and VPS
222222214RanBP1 domain
222222214PPIC-type PPIASE domain
11211219Zn-finger in Ran binding protein and others
17201915191923132Zinc finger C-x8-C-x5-C-x3-H type (and similar)
334333322Poly(ADP-ribose) polymerase catalytic domain
212112211Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
779379428980131591F-box domain
11111117Elongation factor 1 gamma, conserved domain
333333321Calpain family cysteine protease
222222113Copper fist DNA binding domain
565655537CRAL/TRIO domain
16171510121439123BTB/POZ domain
224233319Ricin-type beta-trefoil lectin domain
1111116Inhibitor of Apoptosis domain
344454428Voltage gated chloride channel
244232421Caspase domain
15131711121517100GDSL-like Lipase/Acylhydrolase
11111117Poly-adenylate binding protein, unique domain
111126POLO box duplicated region
28242615331923168ABC transporter transmembrane region
99145107862FAD binding domain
910106318983Condensation domain
11111117S-adenosyl-L-homocysteine hydrolase, NAD binding domain
11111117HAMP domain
222222214ribosomal L5P family C-terminus
657556539Insulinase (Peptidase family M16)
333333321Dehydrogenase E1 component
11111117Lumazine binding domain
666666642Elongation factor G C-terminus
11RNA dependent RNA polymerase
445544430HMGL-like
444444428DnaJ central domain
313322418Starch binding domain
323222317Ribosomal protein L1p/L10e family
109146711966Cation transporting ATPase, C-terminus
129138612767Cation transporter/ATPase, N-terminus
21111118dUTPase
655545434Aconitase C-terminal domain
443334324Amino acid kinase family
11111117N-(5'phosphoribosyl)anthranilate (PRA) isomerase
22243419421720178Acyl transferase domain
11111117Urease beta subunit
1279356749Dihydrodipicolinate synthetase family
40344531323938259haloacid dehalogenase-like hydrolase
9512479854Glycosyl hydrolases family 2
121813614201396Glycosyl hydrolases family 18
11111117Proliferating cell nuclear antigen, N-terminal domain
1111116Acylphosphatase
11111117Adenylosuccinate synthetase
333213318Asparaginase, N-terminal
134122215Peptidase S24-like
212112110Inorganic pyrophosphatase
87111211101170Glycosyl hydrolases family 16
232443422Glycosyl hydrolases family 15
58143810755NADH:flavin oxidoreductase / NADH oxidase family
2252322183-hydroxyacyl-CoA dehydrogenase, C-terminal domain
434344426Glycosyl hydrolase family 20, catalytic domain
444444428HhH-GPD superfamily base excision DNA repair protein
11111117AIR carboxylase
27314524402633226GMC oxidoreductase
223323217Asparagine synthase
10109141491480Fungal cellulose binding domain
666665540Septin
11111117EF-1 guanine nucleotide exchange domain
11111117Homoserine dehydrogenase
413125218Flavin-binding monooxygenase-like
112LPXTG cell wall anchor motif
333333321tRNA synthetases class I (E and Q), catalytic domain
233232419tRNA synthetases class I (R)
455444430XPG N-terminal domain
18102512141516110Metallo-beta-lactamase superfamily
32112110F5/8 type C domain
233243219Choline/Carnitine o-acyltransferase
11111218Putative esterase
11111117Ferrochelatase
222222214Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
11111117Arginosuccinate synthase
11111117Electron transfer flavoprotein FAD-binding domain
333333321RNB domain
77124781055Dioxygenase
333334322CNH domain
112221110Diacylglycerol kinase catalytic domain
91096119963Dual specificity phosphatase, catalytic domain
334342322P21-Rho-binding domain
1214121412121389PX domain
233323319Ras association (RalGDS/AF-6) domain
566565639UBX domain
444444428VHS domain
11111117Phosphoinositide 3-kinase C2
232322216DAHP synthetase I family
1091777121274Carbon-nitrogen hydrolase
223232115N-acetyltransferase
11111117Prephenate dehydratase
444445429Syntaxin
555555535Pumilio-family RNA binding repeat
686768647Histone-like transcription factor (CBF/NF-Y) and archaeal histone
11111117Pterin binding enzyme
222222214ER lumen protein retaining receptor
222222214Glycoprotease family
21112119Histidinol dehydrogenase
444444428impB/mucB/samB family
11111117
11111117Ribosomal L15
11111117Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
11111117Ribosomal L28 family
11111117Ribosomal L29 protein
11111117Ribosomal L39 protein
11211129Ribosomal S17
11111117Ribulose-phosphate 3 epimerase family
11111117Translationally controlled tumour protein
556396741Glycosyl hydrolase family 7
11111117RNA pseudouridylate synthase
444444428Histone deacetylase domain
1189455850POT family
11121118PWWP domain
20242517212129157SET domain