Due to a planned NERSC power outage, JGI portals will be unavailable 6:00am PDT July 10 - 11:59pm PDT July 14. System Status updates available here.
PFAM Domains • Daldinia grandis CBS 114736 v1.0
Annotations/GenomesAntav1Bisnum1DalEC12_1Dalgra1Entma1HypEC38_3Xylhyp1TotalAnnotation Description
PFAMs
10,48610,3948,53210,28110,2119,14911,45970,512
11137 transmembrane receptor (rhodopsin family)
111257 transmembrane receptor (Secretin family)
88545347505862412ATPase family associated with various cellular activities (AAA)
49384341384745301ABC transporter
444444428ATP synthase alpha/beta family, nucleotide-binding domain
14151415151415102Elongation factor Tu GTP binding domain
138101011101173Helix-loop-helix DNA-binding domain
222212112Hsp20/alpha crystallin family
810791171567Hsp70 protein
878779753KH domain
1113SH2 domain
27122613122511126SH3 domain
9101010991067Actin
172256621168932421Ankyrin repeat
213112111PAN domain
788878753ADP-ribosylation factor family
22221717221621137Eukaryotic aspartyl protease
444444428Cyclic nucleotide-binding domain
112Cytochrome b(C-terminal)/b6/petD
11Cytochrome b/b6/petB
11111117Cytochrome c
11Double-stranded RNA binding motif
172192318263EF hand
11134Fe-4S binding domain
212112110Fibronectin type III domain
222223215Globin
20815915191197Glutathione S-transferase, C-terminal domain
21111129Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
858558544Homeodomain
322222215lactate/malate dehydrogenase, NAD binding domain
444445429Myosin head (motor domain)
238122118991291601941,060Cytochrome P450
181115113126133125174967Protein kinase domain
19131712141418107Pyridine nucleotide-disulphide oxidoreductase
28282527272630191Ras family
1311131310121486Response regulator receiver domain
1252464740RNase H
60515955576049391RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
232332318Copper/zinc superoxide dismutase (SODC)
222222214Iron/manganese superoxide dismutases, alpha-hairpin domain
17252026182121148Subtilase family
59785963536959440Sugar (and other) transporter
1312111312131286Thioredoxin
4211513Trypsin
564445533Tubulin/FtsZ family, GTPase domain
514414von Willebrand factor type A domain
91236322257029323Zinc finger, C2H2 type
5474347455165Zinc finger, C3HC4 type (RING finger)
10311216336Zinc knuckle
222222214Protein-tyrosine phosphatase
2001151471261171701611,036short chain dehydrogenase
99536349527175462Zinc-binding dehydrogenase
665665640Thiolase, N-terminal domain
69342825333757283Beta-ketoacyl synthase, N-terminal domain
7486574412Fe-2S iron-sulfur cluster binding domain
112Papain family cysteine protease
11111117Enolase, C-terminal TIM barrel domain
112Cytochrome C and Quinol oxidase polypeptide I
119891181066Glutamine amidotransferase class-I
1010101010101070TCP-1/cpn60 chaperonin family
11ATP synthase A chain
444335326Glutamine synthetase, catalytic domain
222222214Triosephosphate isomerase
15211821191820132E1-E2 ATPase
1288888860Core histone H2A/H2B/H3/H4
11Copper binding proteins, plastocyanin/azurin family
674444534Alpha amylase, catalytic domain
222222214Phorbol esters/diacylglycerol binding domain (C1 domain)
777787851Bacterial transferase hexapeptide (six repeats)
453563531tRNA synthetases class I (I, L, M and V)
1076786852Cyclin, N-terminal domain
27181917141822135Carboxylesterase family
444454429DNA polymerase family B
645445533ATP synthase subunit C
555466637Peroxidase
187101115131892Beta-lactamase
443333424C-5 cytosine-specific DNA methylase
11NADH dehydrogenase
28232624242527177Calcineurin-like phosphoesterase
1015121417121797Cellulase (glycosyl hydrolase family 5)
878778752tRNA synthetases class II (D, K and N)
38373838373939266Mitochondrial carrier protein
1113recA bacterial DNA recombination protein
19181617211521127Aminotransferase class I and II
868557443Phosphoribosyl transferase domain
1010101010101070Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
1124Ribosome inactivating protein
11111117Phosphoglycerate kinase
222222214Ribosomal protein S4/S9 N-terminal domain
222222214Ribosomal protein S12/S23
111115Bacterial regulatory helix-turn-helix proteins, AraC family
11111117Chaperonin 10 Kd subunit
1311121010121078C2 domain
188199818989PH domain
1117101515101795bZIP transcription factor
20201816221823137Aldehyde dehydrogenase family
2321561701681501961901,262Fungal Zn(2)-Cys(6) binuclear cluster domain
25242324232425168Cytochrome b5-like Heme/Steroid binding domain
424433323Oxidoreductase molybdopterin binding domain
17121816141817112Oxidoreductase NAD-binding domain
33272627263131201SNF2 family N-terminal domain
222221213Ribosomal protein S7p/S5e
23212122222122152Ubiquitin-conjugating enzyme
786676747Isocitrate/isopropylmalate dehydrogenase
222222214Ribosomal Proteins L2, RNA binding domain
11111117Hsp90 protein
222222214Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
11111117Dihydrofolate reductase
546415328Chitin recognition protein
223323318Cysteine-rich secretory protein family
11111117Ribosomal protein S3, C-terminal domain
444534327Cupin
223313115Annexin
11111117Eukaryotic-type carbonic anhydrase
211121210Chalcone and stilbene synthases, N-terminal domain
3333333212-oxoacid dehydrogenases acyltransferase (catalytic domain)
547738539Catalase
11111117Disintegrin
14221313UDP-glucoronosyl and UDP-glucosyl transferase
9117668754Aminotransferase class-III
232223216Ribosomal protein S19
11111117DNA gyrase B
744445432Thiamine pyrophosphate enzyme, central domain
453333324Lyase
222232215Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
112Sodium:neurotransmitter symporter family
11111117Adenylate and Guanylate cyclase catalytic domain
11111117ATP synthase delta (OSCP) subunit
11111117Orotidine 5'-phosphate decarboxylase / HUMPS family
11111117Indole-3-glycerol phosphate synthase
2112219Aromatic amino acid lyase
11111117Pyruvate kinase, barrel domain
1212121211121384Kinesin motor domain
31362630283030211DnaJ domain
1413141414141497Proteasome subunit
23442217Major intrinsic protein
11111117ATP synthase
11111229Glycosyl hydrolase family 1
111111173'5'-cyclic nucleotide phosphodiesterase
11111117Profilin
121221211Ribosomal protein L22p/L17e
232222215Ribosomal protein L14p/L23e
1110981010967Ubiquitin family
555555535Cofilin/tropomyosin-type actin-binding protein
23233231814-3-3 protein
525225223Alkaline phosphatase
655565638Zinc carboxypeptidase
39323433273633234Aldo/keto reductase family
157128717672Myb-like DNA-binding domain
844444331Forkhead domain
2211118Glycosyl hydrolases family 32 N-terminal domain
121221211Ribosomal protein L16p/L10e
322222215Ribosomal protein S14p/S29e
433333322FKBP-type peptidyl-prolyl cis-trans isomerase
11111117Glutathione peroxidase
3227
857767747Flavodoxin
11111117Calreticulin family
1491213981479Common central domain of tyrosinase
119111112101175Aminotransferase class-V
11111117Ribonucleotide reductase, small chain
41454543444247307DEAD/DEAH box helicase
93757872708080548Helicase conserved C-terminal domain
11111117EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
222222214Ribosomal protein L23
11111117Pyridoxal-dependent decarboxylase, C-terminal sheet domain
11211118Ribosomal protein L5
776676847Pyridoxal-dependent decarboxylase conserved domain
853443633Citrate synthase, C-terminal domain
555555535GHMP kinases N terminal domain
867766646Biotin carboxylase, N-terminal domain
11111117Tryptophan synthase alpha chain
1011111111121177Pyridoxal-phosphate dependent enzyme
24181919172016133NUDIX domain
766486845pfkB family carbohydrate kinase
763373736Glycosyl hydrolases family 28
326213Luciferase-like monooxygenase
222222214Ribosomal protein L3
222212213Ribosomal protein L11, RNA binding domain
18191616171816120Histidine phosphatase superfamily (branch 1)
11111117Thymidylate synthase
441312Lipoxygenase
444444428ATP synthase alpha/beta chain, C terminal domain
554555534Calponin homology (CH) domain
524336225Glutamine amidotransferases class-II
221222213Ribosomal protein S15
21111118Thaumatin family
222222214Fructose-1-6-bisphosphatase, N-terminal domain
11111117Ribonucleotide reductase, all-alpha domain
221222213Ribosomal protein S2
312222214SRF-type transcription factor (DNA-binding and dimerisation domain)
666676643GATA zinc finger
34163317123715164Amino acid permease
665765742Prolyl oligopeptidase family
222212213Ribosomal protein L30p/L7e
6710869551Histidine phosphatase superfamily (branch 2)
11111117Respiratory-chain NADH dehydrogenase, 30 Kd subunit
645544533Aconitase family (aconitate hydratase)
323323218Glycosyl hydrolase family 10
424214219Glycosyl hydrolases family 17
222222214Ribosomal protein S5, N-terminal domain
11111117Nucleoside diphosphate kinase
11125Tetraspanin family
121221211Ribosomal protein S10p/S20e
333342321Arrestin (or S-antigen), N-terminal domain
11111117Phosphoglucose isomerase
11111117Carbohydrate phosphorylase
11111117SecY translocase
11111117Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222222214Ribosomal protein L6
1033453432Polyprenyl synthetase
445535531Hexokinase
11158121291784Dynamin family
31111119Transcription factor TFIID (or TATA-binding protein, TBP)
776676544Rieske [2Fe-2S] domain
1111116Phytochrome region
314Proton-conducting membrane transporter
989988758Biotin-requiring enzyme
11111117Phosphofructokinase
122222112Ribosomal protein S17
11111117Hydroxymethylglutaryl-coenzyme A reductase
333333220FGGY family of carbohydrate kinases, N-terminal domain
1688811101273Enoyl-CoA hydratase/isomerase
222222214Ribosomal protein S9/S16
222222214Transcription factor TFIIB repeat
898879958Cytidine and deoxycytidylate deaminase zinc-binding region
11111117Molybdopterin oxidoreductase
1269657651Chromo (CHRromatin Organisation MOdifier) domain
444444428Phosphatidylinositol-specific phospholipase C, Y domain
555665638Phosphatidylinositol-specific phospholipase C, X domain
8129867959D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
222222214Malic enzyme, N-terminal domain
2222121126-phosphogluconate dehydrogenase, C-terminal domain
1414871291377Multicopper oxidase
11111010910970WW domain
121212211Ribosomal RNA adenine dimethylase
1113Yeast PIR protein repeat
122106103102106108108755WD domain, G-beta repeat
454546432Heavy-metal-associated domain
573563635Adenylate kinase
222222214Phosphoglucomutase/phosphomannomutase, C-terminal domain
121222313Ribosomal protein S8
222222214Ribosomal protein S11
444444428LIM domain
1113Matrixin
242264525Regulator of chromosome condensation (RCC1) repeat
222222214Ribosomal protein S13/S18
322242318chorismate binding enzyme
33333332160s Acidic ribosomal protein
444444529Prenyltransferase and squalene oxidase repeat
646456536Protein kinase C terminal domain
11111117Single-strand binding protein family
11111117S-adenosylmethionine synthetase, N-terminal domain
988998859Bromodomain
129661191366Acyl-CoA dehydrogenase, C-terminal domain
1413141313141394Ubiquitin carboxyl-terminal hydrolase
11111117Ribosomal protein L36
422242521Ribonuclease T2 family
333333220HSF-type DNA-binding
222232316SRP54-type protein, GTPase domain
11111117Urease alpha-subunit, N-terminal domain
1079888757Serine carboxypeptidase
888888856Phosphatidylinositol 3- and 4-kinase
121121210Transketolase, thiamine diphosphate binding domain
1023332528Glycosyl hydrolases family 11
433343424Inositol monophosphatase family
444444428Glutaredoxin
525224222Isocitrate lyase family
222222214Serine hydroxymethyltransferase
224414320Iron-containing alcohol dehydrogenase
222222214Ribosomal protein L10
424244323KOW motif
111115Ribosomal protein L34
11114Ribosomal protein L33
333333321RF-1 domain
223324218Sodium:solute symporter family
11111117Imidazoleglycerol-phosphate dehydratase
11111117DNA polymerase family A
11111117IMP dehydrogenase / GMP reductase domain
11111117Glucose-6-phosphate dehydrogenase, NAD binding domain
766666744Protein phosphatase 2C
222222214Nucleotidyl transferase
633333425Carbonic anhydrase
11112129Phosphoribulokinase / Uridine kinase family
785555742Fatty acid desaturase
666666642MutS domain V
11112118Delta-aminolevulinic acid dehydratase
544434428Arginase family
666666642MCM P-loop domain
232332318Squalene/phytoene synthase
91010111010969FHA domain
11NADH-ubiquinone/plastoquinone oxidoreductase chain 6
79474338514759364AMP-binding enzyme
533344426G-protein alpha subunit
19887108969HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
1071010891064His Kinase A (phospho-acceptor) domain
333333321Armadillo/beta-catenin-like repeat
32112612132612132Tetratricopeptide repeat
334324322Ion transport protein
11111117DNA gyrase/topoisomerase IV, subunit A
10796611655BRCA1 C Terminus (BRCT) domain
656536435Glycosyl transferases group 1
423224219Glycosyl transferase family 2
131111210SAM domain (Sterile alpha motif)
11111117linker histone H1 and H5 family
11111117Ribosomal protein L7/L12 C-terminal domain
751171426Pectate lyase
433523323ribonuclease
11111117Urease, gamma subunit
444444428CoA-ligase
60372031423166287Phosphopantetheine attachment site
333342321Formyl transferase
9109111191271Metallopeptidase family M24
133156316258Leucine Rich Repeat
57103810115115192alpha/beta hydrolase fold
333333321RNA polymerase Rpb2, domain 6
444443427PB1 domain
222222214Staphylococcal nuclease homologue
9129121291275Rab-GTPase-TBC domain
11111117Tudor domain
11111117WH1 domain
443353325Zinc finger, ZZ type
222312214HRDC domain
968669650CBS domain
222222214Ribosomal protein L13
222222214Ribosomal protein L4/L1 family
11111117Clp protease
445345429S1 RNA binding domain
11111117HIUase/Transthyretin family
535436329AhpC/TSA family
444444428tRNA synthetases class I (W and Y)
1211117UvrD/REP helicase N-terminal domain
587895850Rhodanese-like domain
222222214Universal stress protein family
56284126284033252Acetyltransferase (GNAT) family
11111117SecE/Sec61-gamma subunits of protein translocation complex
11111117C-terminal regulatory domain of Threonine dehydratase
222222214AIR synthase related protein, N-terminal domain
878788955tRNA synthetase class II core domain (G, H, P, S and T)
11111117SpoU rRNA Methylase family
222222214Tetrapyrrole (Corrin/Porphyrin) Methylases
11111117Glycosyl transferase family, a/b domain
1113PDZ domain
543343628Class II Aldolase and Adducin N-terminal domain
444444428Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
555555535Fes/CIP4, and EFC/F-BAR homology domain
524225222IQ calmodulin-binding motif
222222214Phosphoinositide 3-kinase family, accessory domain (PIK domain)
535236226Phospholipase D Active site motif
151541421Regulator of G protein signaling domain
444444428GTPase-activator protein for Ras-like GTPase
443444427RasGEF domain
443444427RasGEF N-terminal motif
1099999964RhoGAP domain
666666642RhoGEF domain
333433322SPRY domain
333333321RNA polymerase Rpb1, domain 2
322232317Guanylate kinase
544434428Gelsolin repeat
646546536UBA/TS-N domain
1781713151714101PHD-finger
11111117GGL domain
666666642HECT-domain (ubiquitin-transferase)
212112110Helix-hairpin-helix motif
11111117MSP (Major sperm protein) domain
534335427Ribonuclease III domain
242432421Region in Clathrin and VPS
322333319RanBP1 domain
222222214PPIC-type PPIASE domain
334223219Zn-finger in Ran binding protein and others
1810176818885Zinc finger C-x8-C-x5-C-x3-H type (and similar)
423223319Poly(ADP-ribose) polymerase catalytic domain
11111117Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
5912661596617244F-box domain
11111117Elongation factor 1 gamma, conserved domain
434444528Calpain family cysteine protease
112222212Copper fist DNA binding domain
865585744CRAL/TRIO domain
109391251058BTB/POZ domain
222213214Ricin-type beta-trefoil lectin domain
11111128Inhibitor of Apoptosis domain
333333321Voltage gated chloride channel
835326431Caspase domain
1871567151280GDSL-like Lipase/Acylhydrolase
11111117Poly-adenylate binding protein, unique domain
11POLO box duplicated region
29192220202323156ABC transporter transmembrane region
677757948FAD binding domain
34109713111498Condensation domain
11111117S-adenosyl-L-homocysteine hydrolase, NAD binding domain
11111117HAMP domain
222222214ribosomal L5P family C-terminus
555665638Insulinase (Peptidase family M16)
333333321Dehydrogenase E1 component
11111117Lumazine binding domain
566666641Elongation factor G C-terminus
546554433HMGL-like
444444428DnaJ central domain
322233419Starch binding domain
233332319Ribosomal protein L1p/L10e family
798977855Cation transporting ATPase, C-terminus
9101111910969Cation transporter/ATPase, N-terminus
11112118dUTPase
645644635Aconitase C-terminal domain
444444428Amino acid kinase family
11111117N-(5'phosphoribosyl)anthranilate (PRA) isomerase
66322824333960282Acyl transferase domain
11111117Urease beta subunit
685565641Dihydrodipicolinate synthetase family
35173517153815172haloacid dehalogenase-like hydrolase
866997954Glycosyl hydrolases family 2
24131616161720122Glycosyl hydrolases family 18
11111117Proliferating cell nuclear antigen, N-terminal domain
111216Translation initiation factor IF-3, C-terminal domain
11111117Acylphosphatase
312212213Adenylosuccinate synthetase
121212110Asparaginase, N-terminal
313323318Peptidase S24-like
11111117Inorganic pyrophosphatase
14191317151316107Glycosyl hydrolases family 16
322232317Glycosyl hydrolases family 15
1079968857NADH:flavin oxidoreductase / NADH oxidase family
111111173-hydroxyacyl-CoA dehydrogenase, C-terminal domain
333232319Glycosyl hydrolase family 20, catalytic domain
564766741HhH-GPD superfamily base excision DNA repair protein
11111117AIR carboxylase
34302827283435216GMC oxidoreductase
332222216Asparagine synthase
226681271778Fungal cellulose binding domain
565665639Septin
11111117EF-1 guanine nucleotide exchange domain
11111117Homoserine dehydrogenase
383724128Flavin-binding monooxygenase-like
11LPXTG cell wall anchor motif
533333424tRNA synthetases class I (E and Q), catalytic domain
311112110tRNA synthetases class I (R)
444434427XPG N-terminal domain
12676610653Metallo-beta-lactamase superfamily
1111116F5/8 type C domain
432232420Choline/Carnitine o-acyltransferase
212222112Putative esterase
11111117Ferrochelatase
222222214Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
111121411Arginosuccinate synthase
11111117Electron transfer flavoprotein FAD-binding domain
333333321RNB domain
8117777855Dioxygenase
333333321CNH domain
222222214Diacylglycerol kinase catalytic domain
877777750Dual specificity phosphatase, catalytic domain
322223216P21-Rho-binding domain
1312131213111387PX domain
323323218Ras association (RalGDS/AF-6) domain
545445431UBX domain
444444428VHS domain
11111117Phosphoinositide 3-kinase C2
222222315DAHP synthetase I family
9121111911972Carbon-nitrogen hydrolase
2111128N-acetyltransferase
11111117Prephenate dehydratase
444444428Syntaxin
545445431Pumilio-family RNA binding repeat
676777747Histone-like transcription factor (CBF/NF-Y) and archaeal histone
11111117Pterin binding enzyme
222222214ER lumen protein retaining receptor
322222215tRNA N6-adenosine threonylcarbamoyltransferase
112212110Histidinol dehydrogenase
444444428impB/mucB/samB family
1113
11111117Ribosomal L15
131341417Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
11111117Ribosomal L28 family
11111117Ribosomal L29 protein
11111117Ribosomal L39 protein
11111117Ribosomal S17
11111117Ribulose-phosphate 3 epimerase family
11111117Translationally controlled tumour protein
745555536Glycosyl hydrolase family 7
2114Ring hydroxylating alpha subunit (catalytic domain)
11111117RNA pseudouridylate synthase
444444428Histone deacetylase domain
646564536POT family
11111117PWWP domain
22211924202023149SET domain
117897121064Isochorismatase family
333333321Permease family
11111117Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
545455533XPG I-region
111115Acetokinase family
333333220DNA photolyase
22123616Nitroreductase family
8867611551Sulfatase