PFAM Domains • Rhizophagus irregularis A1 v1.0
Annotations/GenomesGloin1Lacbi2Morel2Mucci2Phybl2RhiirA1_1Rhimi1_1Tubme1TotalAnnotation Description
PFAMs
12,1048,65610,1609,5849,21611,3848,6265,89975,629
1457 transmembrane receptor (rhodopsin family)
5433157 transmembrane sweet-taste receptor of 3 GCPR
5139474448533845365ATPase family associated with various cellular activities (AAA)
4249945248623435416ABC transporter
44691257451ATP synthase alpha/beta family, nucleotide-binding domain
31217EGF-like domain
1416191721181816139Elongation factor Tu GTP binding domain
112026373512398188Helix-loop-helix DNA-binding domain
111057147357Hsp20/alpha crystallin family
371514111234109142Hsp70 protein
268131412321311129KH domain
22Methyl-accepting chemotaxis protein (MCP) signalling domain
11111117SH2 domain
2840394137314820284SH3 domain
101511111110111190Actin
3195594237304517356Ankyrin repeat
8921121099785ADP-ribosylation factor family
92438273312203166Eukaryotic aspartyl protease
4357757442Cyclic nucleotide-binding domain
11Cystatin domain
1113Cytochrome b(C-terminal)/b6/petD
12126Cytochrome b/b6/petB
1131112111Cytochrome c
71131191336Double-stranded RNA binding motif
2918434335303317248EF hand
12111112104Fe-4S binding domain
111111129Fibronectin type III domain
22127Globin
23131413733118122Glutathione S-transferase, C-terminal domain
2523333223Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
9101227289294128Homeodomain
55Kazal-type serine protease inhibitor domain
1113Laminin EGF domain
3255533228lactate/malate dehydrogenase, NAD binding domain
5771716516679Myosin head (motor domain)
191863041542013526664Cytochrome P450
1,009217202237220603210932,791Protein kinase domain
81411181691510101Pyridine nucleotide-disulphide oxidoreductase
2953416054305125343Ras family
177201518191712125Response regulator receiver domain
36852784133RNase H
88718888971039662693RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
17311Reverse transcriptase (RNA-dependent DNA polymerase)
314Serpin (serine protease inhibitor)
3153243223Copper/zinc superoxide dismutase (SODC)
1322121214Iron/manganese superoxide dismutases, alpha-hairpin domain
22522162426157137Subtilase family
72114472862218163Sugar (and other) transporter
8101915131016899Thioredoxin
213Trefoil (P-type) domain
554253226Trypsin
6668978656Tubulin/FtsZ family, GTPase domain
166323755von Willebrand factor type A domain
9163105140203988741828Zinc finger, C2H2 type
5766696455586036465Zinc finger, C3HC4 type (RING finger)
563418457075239330Zinc knuckle
3236535229Protein-tyrosine phosphatase
4149524533572745349short chain dehydrogenase
2231302923252314197Zinc-binding dehydrogenase
54610565445Thiolase, N-terminal domain
1523222421Beta-ketoacyl synthase, N-terminal domain
47744443372Fe-2S iron-sulfur cluster binding domain
33Papain family cysteine protease
1122212112Enolase, C-terminal TIM barrel domain
5221414Cytochrome C and Quinol oxidase polypeptide I
111115Cytochrome C oxidase subunit II, periplasmic domain
81310910109776Glutamine amidotransferase class-I
101312111510111294TCP-1/cpn60 chaperonin family
1113ATP synthase A chain
5755655341Glutamine synthetase, catalytic domain
1121121110Triosephosphate isomerase
2420353026252615201E1-E2 ATPase
212414142021149137Core histone H2A/H2B/H3/H4
437Bacterial regulatory helix-turn-helix protein, lysR family
23229Copper binding proteins, plastocyanin/azurin family
3931131728Alpha amylase, catalytic domain
56847511248Phorbol esters/diacylglycerol binding domain (C1 domain)
84685108857Bacterial transferase hexapeptide (six repeats)
10354494443tRNA synthetases class I (I, L, M and V)
71415181810207109Cyclin, N-terminal domain
215303131358Carboxylesterase family
254554234474DNA polymerase family B
4465434434ATP synthase subunit C
112Legume lectin domain
2314223118Peroxidase
2218141129Beta-lactamase
6432441327C-5 cytosine-specific DNA methylase
211116NADH dehydrogenase
3033353734283321251Calcineurin-like phosphoesterase
2963434334Cellulase (glycosyl hydrolase family 5)
7566666648tRNA synthetases class II (D, K and N)
3641626354375234379Mitochondrial carrier protein
11recA bacterial DNA recombination protein
1112172020171810125Aminotransferase class I and II
108813111010777Phosphoribosyl transferase domain
112Sigma-54 interaction domain
101314151491610101Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
1112121110Phosphoglycerate kinase
2343323222Ribosomal protein S4/S9 N-terminal domain
2234424223Ribosomal protein S12/S23
314Bacterial regulatory helix-turn-helix proteins, AraC family
1112211110Chaperonin 10 Kd subunit
2718312322252012178C2 domain
2924324448295318277PH domain
571528197269116bZIP transcription factor
1215161512221210114Aldehyde dehydrogenase family
2073404647295256363Fungal Zn(2)-Cys(6) binuclear cluster domain
2923284139293719245Cytochrome b5-like Heme/Steroid binding domain
3342121218Oxidoreductase molybdopterin binding domain
14813161314139100Oxidoreductase NAD-binding domain
1922222020202219164SNF2 family N-terminal domain
2324323221Ribosomal protein S7p/S5e
5423252220512221238Ubiquitin-conjugating enzyme
6678877554Isocitrate/isopropylmalate dehydrogenase
3235434226Ribosomal Proteins L2, RNA binding domain
11Chitinase class I
2234424122Hsp90 protein
2233632223Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
1112212111Dihydrofolate reductase
11136Chitin recognition protein
39116142238Cysteine-rich secretory protein family
1115413117Ribosomal protein S3, C-terminal domain
112Cupin
2226Annexin
3823319Eukaryotic-type carbonic anhydrase
8210Bacterial regulatory proteins, luxR family
33564343312-oxoacid dehydrogenases acyltransferase (catalytic domain)
13423316Catalase
1143212115Disintegrin
1810121757UDP-glucoronosyl and UDP-glucosyl transferase
4646655339Aminotransferase class-III
2434423224Ribosomal protein S19
3111131112DNA gyrase B
3316333426Thiamine pyrophosphate enzyme, central domain
3454453432Lyase
3343343225Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
13221211Ferritin-like domain
1122212112Adenylate and Guanylate cyclase catalytic domain
112111119ATP synthase delta (OSCP) subunit
211111119Orotidine 5'-phosphate decarboxylase / HUMPS family
121111119Indole-3-glycerol phosphate synthase
22Aromatic amino acid lyase
1133323117Pyruvate kinase, barrel domain
3010152820222810163Kinesin motor domain
3736333934363726278DnaJ domain
1514141414161414115Proteasome subunit
3772241228Major intrinsic protein
1122211111ATP synthase
22Glycosyl hydrolase family 1
21386261293'5'-cyclic nucleotide phosphodiesterase
112Protease inhibitor/seed storage/LTP family
1121112110Profilin
3134524224Ribosomal protein L22p/L17e
2233323220Ribosomal protein L14p/L23e
7321312223722112275Ubiquitin family
5576466443Cofilin/tropomyosin-type actin-binding protein
214332432214-3-3 protein
2244323323Alkaline phosphatase
1517Zinc carboxypeptidase
482417262052188213Aldo/keto reductase family
5114382320523316247Myb-like DNA-binding domain
557101056452Forkhead domain
112Glycosyl hydrolases family 32 N-terminal domain
111111118Ribosomal protein L16p/L10e
2224423221Ribosomal protein S14p/S29e
2696625440FKBP-type peptidyl-prolyl cis-trans isomerase
1121212111Glutathione peroxidase
2235324223
5561513611465Flavodoxin
11Tropomyosin
2151221115Calreticulin family
347Common central domain of tyrosinase
761175105556Aminotransferase class-V
11Gram-negative porin
1123111111Ribonucleotide reductase, small chain
5680564847554735424DEAD/DEAH box helicase
86115918174907765679Helicase conserved C-terminal domain
3111131112EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
2234323221Ribosomal protein L23
2141121113Pyridoxal-dependent decarboxylase, C-terminal sheet domain
113351418Ribosomal protein L5
4454543433Pyridoxal-dependent decarboxylase conserved domain
2321221316Citrate synthase, C-terminal domain
6666666547GHMP kinases N terminal domain
768111188261Biotin carboxylase, N-terminal domain
111111129Tryptophan synthase alpha chain
77910989968Pyridoxal-phosphate dependent enzyme
112'Paired box' domain
1414172316212011136NUDIX domain
6547686345pfkB family carbohydrate kinase
61297227Glycosyl hydrolases family 28
2224323220Ribosomal protein L3
2234524224Ribosomal protein L11, RNA binding domain
1078111110101279Histidine phosphatase superfamily (branch 1)
11Chloramphenicol acetyltransferase
1111121412Thymidylate synthase
11Lipoxygenase
44691257451ATP synthase alpha/beta chain, C terminal domain
5513129712669Calponin homology (CH) domain
11Bacterial dnaA protein
851012666457Glutamine amidotransferases class-II
2223233219Ribosomal protein S15
64222117'Cold-shock' DNA-binding domain
345416Thaumatin family
111111118Fructose-1-6-bisphosphatase, N-terminal domain
2134233119Ribonucleotide reductase, all-alpha domain
2234423222Ribosomal protein S2
23410739240SRF-type transcription factor (DNA-binding and dimerisation domain)
241224363522398200GATA zinc finger
623372119111816151Amino acid permease
11Bacterial regulatory proteins, crp family
68106666654Prolyl oligopeptidase family
2125524223Ribosomal protein L30p/L7e
68115254445Histidine phosphatase superfamily (branch 2)
111111118Respiratory-chain NADH dehydrogenase, 30 Kd subunit
4866545442Aconitase family (aconitate hydratase)
11Glycosyl hydrolase family 10
35313318Glycosyl hydrolases family 17
1234523222Ribosomal protein S5, N-terminal domain
1226425123Nucleoside diphosphate kinase
234651324Tetraspanin family
22Galactoside-binding lectin
2223323219Ribosomal protein S10p/S20e
15812222217203119Arrestin (or S-antigen), N-terminal domain
111111118Phosphoglucose isomerase
211212110Carbohydrate phosphorylase
1112222112SecY translocase
22Pili and flagellar-assembly chaperone, PapD N-terminal domain
1511111112Respiratory-chain NADH dehydrogenase, 49 Kd subunit
2243423222Ribosomal protein L6
3835445335Polyprenyl synthetase
22611728240Hexokinase
68117887459Dynamin family
1211117Biopterin-dependent aromatic amino acid hydroxylase
1212211111Transcription factor TFIID (or TATA-binding protein, TBP)
5575554440Rieske [2Fe-2S] domain
11Bacterial regulatory proteins, lacI family
22Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
43123316Proton-conducting membrane transporter
78101210910470Biotin-requiring enzyme
1112222112Phosphofructokinase
1232232116Ribosomal protein S17
1213112112Hydroxymethylglutaryl-coenzyme A reductase
2236626330FGGY family of carbohydrate kinases, N-terminal domain
4711Hemocyanin, copper containing domain
12115Sodium:dicarboxylate symporter family
448MerR family regulatory protein
981014111212682Enoyl-CoA hydratase/isomerase
2234424223Ribosomal protein S9/S16
3353332224Transcription factor TFIIB repeat
5769466548Cytidine and deoxycytidylate deaminase zinc-binding region
3131211113Molybdopterin oxidoreductase
8211692214183111Chromo (CHRromatin Organisation MOdifier) domain
141118Phosphatidylinositol-specific phospholipase C, Y domain
1411310Phosphatidylinositol-specific phospholipase C, X domain
3455545637D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
1625425227Malic enzyme, N-terminal domain
213PEP-utilising enzyme, mobile domain
156Bacterial regulatory proteins, gntR family
21132221146-phosphogluconate dehydrogenase, C-terminal domain
813655133558Multicopper oxidase
1414S-layer homology domain
112Granulin
12816871313683WW domain
2233343121Ribosomal RNA adenine dimethylase
1422213541581621441571001,438WD domain, G-beta repeat
11ATP synthase, Delta/Epsilon chain, long alpha-helix domain
7375473541Heavy-metal-associated domain
3346545434Adenylate kinase
2222222317Phosphoglucomutase/phosphomannomutase, C-terminal domain
2133323219Ribosomal protein S8
3234333122Ribosomal protein S11
5791314415471LIM domain
44Matrixin
5331454227Regulator of chromosome condensation (RCC1) repeat
3234224121Ribosomal protein S13/S18
211116Tau and MAP protein, tubulin-binding repeat
44Fimbrial protein
12115NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
2222252219chorismate binding enzyme
446873734260s Acidic ribosomal protein
22CUB domain
5644444435Prenyltransferase and squalene oxidase repeat
669911510662Protein kinase C terminal domain
12111118Single-strand binding protein family
11Type II/IV secretion system protein
111111118S-adenosylmethionine synthetase, N-terminal domain
411016201419186144Bromodomain
347Bacterial regulatory proteins, tetR family
98181516131711107Acyl-CoA dehydrogenase, C-terminal domain
2316252621222214169Ubiquitin carboxyl-terminal hydrolase
1111116Ribosomal protein L36
3314314Ribonuclease T2 family
6472014614374HSF-type DNA-binding
3222252119SRP54-type protein, GTPase domain
1112211110Urease alpha-subunit, N-terminal domain
8745774345Serine carboxypeptidase
88111310812878Phosphatidylinositol 3- and 4-kinase
11DeoR C terminal sensor domain
1222212113Transketolase, thiamine diphosphate binding domain
11211118WHEP-TRS domain
3222242219Inositol monophosphatase family
11Flagella basal body rod protein
45610546444Glutaredoxin
1212112212Isocitrate lyase family
2122222215Serine hydroxymethyltransferase
211151112Iron-containing alcohol dehydrogenase
2224223118Ribosomal protein L10
48910856353KOW motif
111111118Ribosomal protein L34
112Ribosomal protein L33
4233243223RF-1 domain
122131212Sodium:solute symporter family
111112119Imidazoleglycerol-phosphate dehydratase
2111131111DNA polymerase family A
111211119IMP dehydrogenase / GMP reductase domain
1133312115Glucose-6-phosphate dehydrogenase, NAD binding domain
1091110111011476Protein phosphatase 2C
7336476440Nucleotidyl transferase
273222119Carbonic anhydrase
2122122214Phosphoribulokinase / Uridine kinase family
415Transcriptional regulatory protein, C terminal
10811816107474Fatty acid desaturase
5667656647MutS domain V
111211119Delta-aminolevulinic acid dehydratase
1222332318Arginase family
8686686654MCM P-loop domain
2213423118Squalene/phytoene synthase
33Bacterial extracellular solute-binding proteins, family 5 Middle
22Bacterial extracellular solute-binding proteins, family 3
111117171810159108FHA domain
1113NADH-ubiquinone/plastoquinone oxidoreductase chain 6
2229353736343021244AMP-binding enzyme
4498121058399G-protein alpha subunit
13116132123142198373HMG (high mobility group) box
112NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
11125Cytochrome c oxidase subunit III
1041378128971His Kinase A (phospho-acceptor) domain
727101078354Armadillo/beta-catenin-like repeat
5973393631843738397Tetratricopeptide repeat
37214878441157Ion transport protein
2111121110DNA gyrase/topoisomerase IV, subunit A
11112Binding-protein-dependent transport system inner membrane component
11HlyD membrane-fusion protein of T1SS
22Periplasmic binding proteins and sugar binding domain of LacI family
812101066121074BRCA1 C Terminus (BRCT) domain
11759887560Glycosyl transferases group 1
11364583242Glycosyl transferase family 2
81123107234SAM domain (Sterile alpha motif)
443141118linker histone H1 and H5 family
21111118Ribosomal protein L7/L12 C-terminal domain
22Pectate lyase
3115ribonuclease
1112221111Urease, gamma subunit
3374363332CoA-ligase
2558834742Phosphopantetheine attachment site
1222222215Formyl transferase
11Antenna complex alpha/beta subunit
69131514815787Metallopeptidase family M24
5516623333682710304Leucine Rich Repeat
2620392523301619198alpha/beta hydrolase fold
5353353330RNA polymerase Rpb2, domain 6
246EAL domain
10711810118469PB1 domain
2222212215Staphylococcal nuclease homologue
1511162729142211145Rab-GTPase-TBC domain
111111118Tudor domain
1222111111WH1 domain
154755195565Zinc finger, ZZ type
111211119HRDC domain
139151818161510114CBS domain
2233524223Ribosomal protein L13
3224433223Ribosomal protein L4/L1 family
111111118Clp protease
5473354536S1 RNA binding domain
112111119HIUase/Transthyretin family
22Outer membrane usher protein
3455555436AhpC/TSA family
4444444331tRNA synthetases class I (W and Y)
2112111110UvrD/REP helicase N-terminal domain
6488887554Rhodanese-like domain
323121269148Universal stress protein family
2328464327222813230Acetyltransferase (GNAT) family
111121119SecE/Sec61-gamma subunits of protein translocation complex
111111118C-terminal regulatory domain of Threonine dehydratase
1222232216AIR synthase related protein, N-terminal domain
1161111111112982tRNA synthetase class II core domain (G, H, P, S and T)
133313115SpoU rRNA Methylase family
426Phage integrase family
3533352226Tetrapyrrole (Corrin/Porphyrin) Methylases
111111118Glycosyl transferase family, a/b domain
21115PDZ domain
1112212313Class II Aldolase and Adducin N-terminal domain
22Adenoviral fibre protein (repeat/shaft region)
11Diacylglycerol kinase accessory domain
4366648441Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
484128510556Fes/CIP4, and EFC/F-BAR homology domain
4579839449IQ calmodulin-binding motif
2233323220Phosphoinositide 3-kinase family, accessory domain (PIK domain)
9458867451Phospholipase D Active site motif
61381047140Regulator of G protein signaling domain
5441010510452GTPase-activator protein for Ras-like GTPase
67111718619488RasGEF domain
589910411561RasGEF N-terminal motif
1113223329103110159RhoGAP domain
101616312812276146RhoGEF domain
6746121042115157SPRY domain
3343333426RNA polymerase Rpb1, domain 2
1121121211Guanylate kinase
4477845342Gelsolin repeat
191023131519188125UBA/TS-N domain
1818232326153113167PHD-finger
113314114GGL domain
659109610661HECT-domain (ubiquitin-transferase)
3222132217Helix-hairpin-helix motif
1113BRCA2 repeat
1231212113MSP (Major sperm protein) domain
9743273540Ribonuclease III domain
4232242120Region in Clathrin and VPS
2342222320RanBP1 domain
2222222216PPIC-type PPIASE domain
5532464332Zn-finger in Ran binding protein and others
1930211714232112157Zinc finger C-x8-C-x5-C-x3-H type (and similar)
112116B-box zinc finger
7421171225Poly(ADP-ribose) polymerase catalytic domain
21115Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
891561841052021027639953F-box domain
1212211111Elongation factor 1 gamma, conserved domain
2821121118Calpain family cysteine protease
1226716227Copper fist DNA binding domain
561310867560CRAL/TRIO domain
66717177312481281,007BTB/POZ domain
1411878101371Ricin-type beta-trefoil lectin domain
11111117Inhibitor of Apoptosis domain
3332232321Voltage gated chloride channel
21755524141Caspase domain
92515899158GDSL-like Lipase/Acylhydrolase
2222525121Poly-adenylate binding protein, unique domain
131117POLO box duplicated region
1113NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
2218542524211114189ABC transporter transmembrane region
661417Integrase core domain
4348947443FAD binding domain
1211229Condensation domain
11Bacterial flagellin N-terminal helical region
2121121111S-adenosyl-L-homocysteine hydrolase, NAD binding domain
1123382121HAMP domain
2244524124ribosomal L5P family C-terminus
7577978555Insulinase (Peptidase family M16)
5566464339Dehydrogenase E1 component
111111118Lumazine binding domain
71087788661Elongation factor G C-terminus
4446664337HMGL-like
4457645439DnaJ central domain
11Starch binding domain
3223333221Ribosomal protein L1p/L10e family
1351713131112892Cation transporting ATPase, C-terminus
141424181514168123Cation transporter/ATPase, N-terminus
12111219dUTPase
4546545437Aconitase C-terminal domain
35477653