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PFAM Domains • Khuskia oryzae ATCC 28132 v1.0
Annotations/GenomesAcrst1Conlig1Crypa2DalEC12_1Gloci1Khuory1Maggr1Mictr1Necha2Neucr2TotalAnnotation Description
PFAMs
10,6569,2468,5018,53212,74610,6838,2019,29610,1428,03496,037
11247 transmembrane receptor (rhodopsin family)
1237 transmembrane receptor (Secretin family)
48465553625352505343515ATPase family associated with various cellular activities (AAA)
63574443734350447637530ABC transporter
444444444440ATP synthase alpha/beta family, nucleotide-binding domain
14131414141513141418143Elongation factor Tu GTP binding domain
1415101012109131220125Helix-loop-helix DNA-binding domain
322223323325Hsp20/alpha crystallin family
9787810777878Hsp70 protein
81198989881391KH domain
11Ribulose bisphosphate carboxylase large chain, catalytic domain
11111117SH2 domain
24212026241223222326221SH3 domain
109101010109971195Actin
62887766170296213413153872Ankyrin repeat
12313954117156PAN domain
787877788976ADP-ribosylation factor family
13242717182519111819191Eukaryotic aspartyl protease
444444444642Cyclic nucleotide-binding domain
112Cytochrome b(C-terminal)/b6/petD
11Cytochrome b/b6/petB
111111111110Cytochrome c
11114Double-stranded RNA binding motif
1518171918118152118160EF hand
111112113124Fe-4S binding domain
522231223325Fibronectin type III domain
122222122218Globin
1691015169715186121Glutathione S-transferase, C-terminal domain
111111121111Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
107581157612778Homeodomain
232232343428lactate/malate dehydrogenase, NAD binding domain
112Low-density lipoprotein receptor repeat class B
454454545545Myosin head (motor domain)
1119511611827214612887142411,256Cytochrome P450
1031251161131271011081171491341,193Protein kinase domain
27201617271412162413186Pyridine nucleotide-disulphide oxidoreductase
22292825233026252528261Ras family
15171413152113111517151Response regulator receiver domain
133252236229RNase H
57624859645559605874596RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
112Retroviral aspartyl protease
112Reverse transcriptase (RNA-dependent DNA polymerase)
11Serpin (serine protease inhibitor)
222213123321Copper/zinc superoxide dismutase (SODC)
221232222321Iron/manganese superoxide dismutases, alpha-hairpin domain
3628102044272623298251Subtilase family
1909679591798564138247381,175Sugar (and other) transporter
1714141113139131411129Thioredoxin
821241413127Trypsin
444454447545Tubulin/FtsZ family, GTPase domain
46246243637von Willebrand factor type A domain
757750638822546612464683Zinc finger, C2H2 type
3740364340840373842361Zinc finger, C3HC4 type (RING finger)
264111027561265Zinc knuckle
232222222221Protein-tyrosine phosphatase
19614113214723510196146259661,519short chain dehydrogenase
8880756312949557115533798Zinc-binding dehydrogenase
755556558556Thiolase, N-terminal domain
17223728473133121511253Beta-ketoacyl synthase, N-terminal domain
9548854466592Fe-2S iron-sulfur cluster binding domain
2114Papain family cysteine protease
111111112313Enolase, C-terminal TIM barrel domain
213Cytochrome C and Quinol oxidase polypeptide I
22Cytochrome C oxidase subunit II, periplasmic domain
997881189121192Glutamine amidotransferase class-I
101010101010101091099TCP-1/cpn60 chaperonin family
11ATP synthase A chain
443443334537Glutamine synthetase, catalytic domain
212222222219Triosephosphate isomerase
26151418271919222813201E1-E2 ATPase
9988888881084Core histone H2A/H2B/H3/H4
91411412681081092Alpha amylase, catalytic domain
321222222220Phorbol esters/diacylglycerol binding domain (C1 domain)
7797137979984Bacterial transferase hexapeptide (six repeats)
344335437339tRNA synthetases class I (I, L, M and V)
7776676512770Cyclin, N-terminal domain
38193319622820264511301Carboxylesterase family
444444444440DNA polymerase family B
564555655450ATP synthase subunit C
5665139734664Peroxidase
14111010209910356134Beta-lactamase
223344432229C-5 cytosine-specific DNA methylase
29323126292323293132285Calcineurin-like phosphoesterase
181512121716912145130Cellulase (glycosyl hydrolase family 5)
897888777877tRNA synthetases class II (D, K and N)
43383738443838384740401Mitochondrial carrier protein
11recA bacterial DNA recombination protein
27181716341616172514200Aminotransferase class I and II
99988498121086Phosphoribosyl transferase domain
10101010101010101011101Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11Ribosome inactivating protein
111111111110Phosphoglycerate kinase
222222222220Ribosomal protein S4/S9 N-terminal domain
222222222321Ribosomal protein S12/S23
12115Bacterial regulatory helix-turn-helix proteins, AraC family
111111111110Chaperonin 10 Kd subunit
14131012141216111614132C2 domain
1816191918816191728178PH domain
13971013121112119107bZIP transcription factor
46211918441818326516297Aldehyde dehydrogenase family
4702881661704501641082984781392,731Fungal Zn(2)-Cys(6) binuclear cluster domain
23242023342322253523252Cytochrome b5-like Heme/Steroid binding domain
33453335433Oxidoreductase molybdopterin binding domain
21171818281319192515193Oxidoreductase NAD-binding domain
26262926282524263328271SNF2 family N-terminal domain
221222222219Ribosomal protein S7p/S5e
19222021212119192020202Ubiquitin-conjugating enzyme
9786877119779Isocitrate/isopropylmalate dehydrogenase
222222222220Ribosomal Proteins L2, RNA binding domain
111111111110Hsp90 protein
222222222220Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
111111111110Dihydrofolate reductase
362612513412265Chitin recognition protein
543352634338Cysteine-rich secretory protein family
111111111110Ribosomal protein S3, C-terminal domain
643484266144Cupin
221322223322Annexin
121141232118Eukaryotic-type carbonic anhydrase
121121222115Chalcone and stilbene synthases, N-terminal domain
5333433343342-oxoacid dehydrogenases acyltransferase (catalytic domain)
464754258348Catalase
121111223115Disintegrin
3216651125UDP-glucoronosyl and UDP-glucosyl transferase
18687167615199111Aminotransferase class-III
222222222220Ribosomal protein S19
111111111211DNA gyrase B
6664934410658Thiamine pyrophosphate enzyme, central domain
953364365347Lyase
222222222220Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
32232315Sodium:neurotransmitter symporter family
111111111211Adenylate and Guanylate cyclase catalytic domain
111111111110ATP synthase delta (OSCP) subunit
111121111111Orotidine 5'-phosphate decarboxylase / HUMPS family
111111111211Indole-3-glycerol phosphate synthase
11111117Aromatic amino acid lyase
121111121213Pyruvate kinase, barrel domain
1112912111110121113112Kinesin motor domain
26292426292826252833274DnaJ domain
14141414141414141416142Proteasome subunit
666467645151Major intrinsic protein
111111111110ATP synthase
633162235233Glycosyl hydrolase family 1
1111111112113'5'-cyclic nucleotide phosphodiesterase
111111111211Profilin
11112111110Ribosomal protein L22p/L17e
222222222220Ribosomal protein L14p/L23e
111311915910101114113Ubiquitin family
654555553649Cofilin/tropomyosin-type actin-binding protein
22222322232214-3-3 protein
842583665754Alkaline phosphatase
182151341137266Zinc carboxypeptidase
35364434532923365419363Aldo/keto reductase family
1315111215715171220137Myb-like DNA-binding domain
443453444439Forkhead domain
951132556239Glycosyl hydrolases family 32 N-terminal domain
111112111111Ribosomal protein L16p/L10e
222223221220Ribosomal protein S14p/S29e
362333333433FKBP-type peptidyl-prolyl cis-trans isomerase
111111111110Glutathione peroxidase
12122222216
98971369813688Flavodoxin
11Protamine P1
131111111112Calreticulin family
19115123325141459147Common central domain of tyrosinase
1097111210785887Aminotransferase class-V
111111111110Ribonucleotide reductase, small chain
37423845404441385641422DEAD/DEAH box helicase
81817778777576708780782Helicase conserved C-terminal domain
111111111110EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
212222222219Ribosomal protein L23
111111111110Pyridoxal-dependent decarboxylase, C-terminal sheet domain
221212212217Ribosomal protein L5
4876755610664Pyridoxal-dependent decarboxylase conserved domain
224344223430Citrate synthase, C-terminal domain
555554555650GHMP kinases N terminal domain
976786699673Biotin carboxylase, N-terminal domain
111111111110Tryptophan synthase alpha chain
179101119912132311134Pyridoxal-phosphate dependent enzyme
16171519191714181818171NUDIX domain
665677574962pfkB family carbohydrate kinase
410213205349281Glycosyl hydrolases family 28
11231412Luciferase-like monooxygenase
222222222220Ribosomal protein L3
222222222220Ribosomal protein L11, RNA binding domain
13131116151411131312131Histidine phosphatase superfamily (branch 1)
22Chloramphenicol acetyltransferase
111111111110Thymidylate synthase
113112110Lipoxygenase
444444444440ATP synthase alpha/beta chain, C terminal domain
555455555852Calponin homology (CH) domain
445483554547Glutamine amidotransferases class-II
222122222219Ribosomal protein S15
1111111119Thaumatin family
222222212219Fructose-1-6-bisphosphatase, N-terminal domain
111111111110Ribonucleotide reductase, all-alpha domain
222122222219Ribosomal protein S2
212224222221SRF-type transcription factor (DNA-binding and dimerisation domain)
108568129881084GATA zinc finger
65383833741529318722432Amino acid permease
755565656353Prolyl oligopeptidase family
222222221219Ribosomal protein L30p/L7e
10991010101278792Histidine phosphatase superfamily (branch 2)
111111111110Respiratory-chain NADH dehydrogenase, 30 Kd subunit
665575578458Aconitase family (aconitate hydratase)
774378653454Glycosyl hydrolase family 10
344452222533Glycosyl hydrolases family 17
222222222220Ribosomal protein S5, N-terminal domain
111111111110Nucleoside diphosphate kinase
122112112114Ribosomal protein S10p/S20e
344323545437Arrestin (or S-antigen), N-terminal domain
111111111110Phosphoglucose isomerase
111111111110Carbohydrate phosphorylase
111111111110SecY translocase
111111111110Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222222222220Ribosomal protein L6
343374943343Polyprenyl synthetase
544556444445Hexokinase
997810911109789Dynamin family
111111111110Transcription factor TFIID (or TATA-binding protein, TBP)
8546955814468Rieske [2Fe-2S] domain
11114Phytochrome region
139891188109893Biotin-requiring enzyme
111111111110Phosphofructokinase
222222222220Ribosomal protein S17
111111111110Hydroxymethylglutaryl-coenzyme A reductase
443343434335FGGY family of carbohydrate kinases, N-terminal domain
2111117Sodium:dicarboxylate symporter family
19131381810810237129Enoyl-CoA hydratase/isomerase
222222222220Ribosomal protein S9/S16
222222222321Transcription factor TFIIB repeat
7998109778983Cytidine and deoxycytidylate deaminase zinc-binding region
121111221113Molybdopterin oxidoreductase
7116913911741289Chromo (CHRromatin Organisation MOdifier) domain
645457547451Phosphatidylinositol-specific phospholipase C, Y domain
746578559662Phosphatidylinositol-specific phospholipase C, X domain
2191191811814146121D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
222222222321Malic enzyme, N-terminal domain
1122221312176-phosphogluconate dehydrogenase, C-terminal domain
81816824151691210136Multicopper oxidase
11Granulin
1112610111091011999WW domain
111112111111Ribosomal RNA adenine dimethylase
11111117Yeast PIR protein repeat
1041111041031171171041301261141,130WD domain, G-beta repeat
884484558559Heavy-metal-associated domain
333343344434Adenylate kinase
121222222117Phosphoglucomutase/phosphomannomutase, C-terminal domain
221112212317Ribosomal protein S8
11212212113Ribosomal protein S11
534444445542LIM domain
112Matrixin
132242332224Regulator of chromosome condensation (RCC1) repeat
222222222220Ribosomal protein S13/S18
232222222322chorismate binding enzyme
33334333343260s Acidic ribosomal protein
11CUB domain
454465545446Prenyltransferase and squalene oxidase repeat
756665764860Protein kinase C terminal domain
111111111211Single-strand binding protein family
111111111211S-adenosylmethionine synthetase, N-terminal domain
778878888877Bromodomain
1291461310812149107Acyl-CoA dehydrogenase, C-terminal domain
13141314141314141517141Ubiquitin carboxyl-terminal hydrolase
1111111119Ribosomal protein L36
22322322119Ribonuclease T2 family
333333333330HSF-type DNA-binding
222223222221SRP54-type protein, GTPase domain
211111111212Urease alpha-subunit, N-terminal domain
91511920565174101Serine carboxypeptidase
888888888880Phosphatidylinositol 3- and 4-kinase
343142255130Transketolase, thiamine diphosphate binding domain
1064356593253Glycosyl hydrolases family 11
744344335542Inositol monophosphatase family
543454443541Glutaredoxin
733562264341Isocitrate lyase family
322222233324Serine hydroxymethyltransferase
553422136132Iron-containing alcohol dehydrogenase
222222222321Ribosomal protein L10
343434526438KOW motif
11111117Ribosomal protein L34
11Ribosomal protein L33
223333232326RF-1 domain
435352336236Sodium:solute symporter family
111111111110Imidazoleglycerol-phosphate dehydratase
111111111110DNA polymerase family A
111111111110IMP dehydrogenase / GMP reductase domain
111111111110Glucose-6-phosphate dehydrogenase, NAD binding domain
666667567762Protein phosphatase 2C
222222222220Nucleotidyl transferase
552332444335Carbonic anhydrase
111112111111Phosphoribulokinase / Uridine kinase family
7665710568565Fatty acid desaturase
666666666660MutS domain V
111111111110Delta-aminolevulinic acid dehydratase
744483455549Arginase family
666666666660MCM P-loop domain
222223112320Squalene/phytoene synthase
11Bacterial extracellular solute-binding proteins, family 5 Middle
11Bacterial extracellular solute-binding proteins, family 3
978109891191090FHA domain
53374743614648425028455AMP-binding enzyme
433333334433G-protein alpha subunit
76789610961583HMG (high mobility group) box
1314111012161081113118His Kinase A (phospho-acceptor) domain
222333233326Armadillo/beta-catenin-like repeat
22282326271327292526246Tetratricopeptide repeat
444433223332Ion transport protein
111111111211DNA gyrase/topoisomerase IV, subunit A
9989107108101090BRCA1 C Terminus (BRCT) domain
798684657969Glycosyl transferases group 1
543383229443Glycosyl transferase family 2
11112114315SAM domain (Sterile alpha motif)
11111111210linker histone H1 and H5 family
111111111110Ribosomal protein L7/L12 C-terminal domain
4311432612146Pectate lyase
211352221221ribonuclease
211111111212Urease, gamma subunit
545454434442CoA-ligase
1713302039302714198217Phosphopantetheine attachment site
334343233331Formyl transferase
10999911813111099Metallopeptidase family M24
1617121518513141419143Leucine Rich Repeat
65424138651340394124408alpha/beta hydrolase fold
333333333330RNA polymerase Rpb2, domain 6
444444444440PB1 domain
222222222220Staphylococcal nuclease homologue
11109910129101010100Rab-GTPase-TBC domain
111111111110Tudor domain
1111111119WH1 domain
654334436442Zinc finger, ZZ type
112213211115HRDC domain
989810710981189CBS domain
222222222321Ribosomal protein L13
222222222321Ribosomal protein L4/L1 family
111111111110Clp protease
241544533536S1 RNA binding domain
111111111312HIUase/Transthyretin family
344564345341AhpC/TSA family
444444444440tRNA synthetases class I (W and Y)
111121119UvrD/REP helicase N-terminal domain
854758556457Rhodanese-like domain
222222222523Universal stress protein family
49424341572933446131430Acetyltransferase (GNAT) family
111111111110SecE/Sec61-gamma subunits of protein translocation complex
111111111211C-terminal regulatory domain of Threonine dehydratase
222222222220AIR synthase related protein, N-terminal domain
89888781091085tRNA synthetase class II core domain (G, H, P, S and T)
111111111110SpoU rRNA Methylase family
11Phage integrase family
222222222220Tetrapyrrole (Corrin/Porphyrin) Methylases
111111111110Glycosyl transferase family, a/b domain
11112129PDZ domain
13753945312263Class II Aldolase and Adducin N-terminal domain
443444444540Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
554555433443Fes/CIP4, and EFC/F-BAR homology domain
454442544844IQ calmodulin-binding motif
222222222220Phosphoinositide 3-kinase family, accessory domain (PIK domain)
565553645650Phospholipase D Active site motif
112126112219Regulator of G protein signaling domain
444444444743GTPase-activator protein for Ras-like GTPase
444344444641RasGEF domain
444344442639RasGEF N-terminal motif
8999898891592RhoGAP domain
764666665759RhoGEF domain
333333343331SPRY domain
333333333330RNA polymerase Rpb1, domain 2
22222223219Guanylate kinase
544455554445Gelsolin repeat
7756858861070UBA/TS-N domain
15171117181315171618157PHD-finger
1111111119GGL domain
6666666