Transcription Factors • Mycorrhizal Fungi

Within the framework of the JGI Mycorrhizal Genomics Initiative (MGI) project, we are sequencing a phylogenetically and ecologically diverse suite of mycorrhizal fungi (Basidiomycota and Ascomycota), which include the major clades of symbiotic species associating with trees and woody shrubs. Analyses of these genomes will provide new insights into the diversity of mechanisms for the mycorrhizal symbioses, including ericoid-, orchidoid- and ectomycorrhizal associations. A large collaborative effort led by PI of these project, Francis Martin (INRA), aims for master publication(s) of the MGI data analyses. Researchers who wish to publish analyses using data from unpublished MGI genomes are respectfully required to contact the PIs and JGI to avoid potential conflicts on data use and coordinate other publications with the MGI master paper(s).

Annotations/GenomesAcema1Amamu1Amarub1Boled5Boledp1Cananz1Cenge3CerAGIChove1ClaPMI390Coraus1Corcam1Corgl3Gaumor1_1Geocar1Gigro1Gloin1Gyrli1Hebcy2Hydru2Hyssto1Kalpfe1Kurarg1Lacaka1Lacam2Lacbi2Lacdel1Lachat1Lachen1Lacpsa1Lacpse1Lacqui1Lacsan1Lacsub1Lacviv1Lacvol1MelPMI1271_1Melbi2Melbro1Melva1Morco1Muloch1Oidma1Paxam1Paxin1Paxru2Pilcr1Pisalb1Piscro1Pismar1Pismi1Pismi_AB1_1Pisthe1Pisthe227_1Pisti1Rhice1_1Rhidi1Rhier1Rhiir2_1RhiirA1_1RhiirA4RhiirA5RhiirB3RhiirC2Rhisa1Rhitru1Rhives1Rhivi1Rhivul1Rusbre1Ruscom1Rusdis1Rusear1Ruseme1Rusoch1Rusrug1Russem1Rusvin1Sclci1Sebve1Sebvebe1Serend1Suiame1Suiamp1Suibov1Suibr2Suicli1Suicot1Suidec1Suidis1Suifus1Suigr1Suihi1Suilak1Suilu4Suiocc1Suipal1Suipic1Suipla1Suisu1Suisub1Suisubl1Suitom1Suivar1Terbo2Tercla1Thega1Theter1Tirniv1Trihyb1Trima3Tubae1Tubbor1Tubma1Tubme1v2Tulca1Tulcal1Wilmi1Xerba1TotalAnnotation Description
Transcription Factors
8183292982912772804414183043662472813192733125194732793152662262622652613503592862702552422922682882572692587917872331,1193332191,03329130528132427528131828522827728129341442265243749750851751051228924724329324624024125525726527023526824830831631322024924625435325127531227228930830826427126024827425526525529426126626723129428722827932125827128928330130635629238,984
20141313158111181611111113921111112911913121420151212131113121112122216102099151110111020121412111215141212191312121212121212101211111111101111111191210111111111212121416121211121311111214111212121112991114108128910910119101,431Helix-loop-helix DNA-binding domain
989171281311588118144691197947101110910911101112910106891148711109121010111011912107786991099151210131288101012188814910101410101113121117121714111211141414111510151213556633154443975111,161Homeodomain
1378032262914107755652232471332223915558522323232566632221232130233434272352139171456914946174645830394466254038653024116359810210811010855202955232320322021242325218277793725323510126337331297482293323203230362838273157175018193649172553207142104715,589Zinc finger, C2H2 type
1261281020145931012810121056698109106713101010912121113102411811710205557976678741316913767776986109111111101311111466557987787886610891087888879125911116101282049651,070bZIP transcription factor
34358595854751281187014352516139909720536663355962497973575450456144554757432833294055475394696060537450545854415153543021258202926252630514640534244424244514539473849536524474647585051564755565051534846514950515546505341718650647360585463414876588,308Fungal Zn(2)-Cys(6) binuclear cluster domain
1415965101415201178139721511312108977141477881112878761781818617131213138910127781426291929525857535513961465779877781398487815771478141397777878857138221268158101999418121,514Myb-like DNA-binding domain
4567855444444154555441146555555555455565544535556556555554545554556566555555555558775565565766655551264656546554454444111545637Forkhead domain
62222222323352242222223243222222222296242352223332222222333343332222222222233222213222242322522222212222232224522222322297SRF-type transcription factor (DNA-binding and dimerisation domain)
8101410910714799111311621241091013910131212121112101213131512188112389118999101211151210111011291992022252327241017161910111214111314111314121010810118131011102213111010101011161011102717167810137610768610127121,455GATA zinc finger
1112111111112211112111111221121111111111111211212211111111112111111283111131431111111211111111114121112212111111111111155Transcription factor TFIID (or TATA-binding protein, TBP)
310796635345794366564444454444454444433533434444461154568683667977444445443644466444634547557454985544445433553342333201934597HSF-type DNA-binding
918182621871268151517247161131151381081314191617151115171717141417681586147161516151718201313211716160163817614214614614514116161616171413151622161221141618131115141617161716181716151518171617161515151819106141661016779811198163,064HMG (high mobility group) box
32222122222222211231222222212223222242232232222222223221131111112222222222222223222222222222222222222222222221221222222233Copper fist DNA binding domain
65101011567664666688776776776986786976876767767877869767867969899986778688768677777677679756785857777868876666575666666866823Histone-like transcription factor (CBF/NF-Y) and archaeal histone
1111111111111T-box
31112343111221121112111211235212212222232411121223222322122111222232211222222222221211156PAS fold
11111111111111111111111111111111111111111111111111111111111111111111111111111112111111112111111111111111121111111111111122G10 protein
113431112711123333333333313112122222211331333333323343413414411543324444451121111111111207TEA/ATTS domain
13122121111212116111113211221121122111211112111223121211111211111231111241112221112211111221111212123222112111211111111172Helix-turn-helix
4344433331333232222122632286555643594444434223154334463225222222333336461046551041123331332332233323333333321434332224632399ARID/BRIGHT DNA binding domain
41511141411111233331112121115141615141111111111412111241161NF-X1 type zinc finger
11222111114212131121212211222222222211311211111222122212211111111221222322222211112221221222132222222222111211222123211195TFIIE alpha subunit
311211111111112311111111111111111115312111111121111112223333331111111111119111111111111111111111111112111111111111211156CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
19911121098721811357142254212224221112111217116161127868153544471111366666522731211111128852331533633772224233233354612622102597543AT hook motif
111111111111111111111111111111111111111111111121211111111111111311111111111111111111111111111111111111111111111111111121STE like transcription factor
1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111109RFX DNA-binding domain
122111112111111111111111111111111111111121111121111211111121111111111111111122111111111111111111111111111134341111133Transcription initiation factor IIA, gamma subunit, helical domain
323222222222E2F/DP family winged-helix DNA-binding domain
2342222615453213223234324444333443223233122222222222222221222222222222633222223522222232224223222223222112331211112122282Paired amphipathic helix repeat
122111111111111111111111111111111111111122111112111121111111211111111111111111112111111111111111111111111111123221111130Transcription initiation factor IIA, gamma subunit
11111111111111211111111111111111111111111111111111111111111111111111113111111112111111111111111111111111108DDT domain
21111221211111122111121111111111111122122121111111111111121211121111111111111113111111111111111111111111221122122221121145MIZ/SP-RING zinc finger
1211111111111111111111111112111111111111111111111111111111111111111111111111111111111111111111112111103C5HC2 zinc finger
5149149311139232221112121211147FAR1 DNA-binding domain
1168WRKY DNA -binding domain
11211111111214111121111111111113111111112111112112111111111111112111111111111123111111121111