Transcription Factors • Laccaria

Within the framework of the JGI Mycorrhizal Genomics Initiative (MGI), we are sequencing a phylogenetically and ecologically diverse suite of mycorrhizal fungi (Basidiomycota and Ascomycota), which include the major clades of symbiotic species associating with trees and woody shrubs. In addition, we are re-sequencing genomes of Laccaria bicolor to get insight into the historical microevolutionary forces driving the genomic evolution of symbiosis-related genes.

Annotations/GenomesLacam2Lacbi2LacbiD101_1TotalAnnotation Description
Transcription Factors
14201448Helix-loop-helix DNA-binding domain
77721Response regulator receiver domain
666377206Zinc finger, C2H2 type
676674207Zinc finger, C3HC4 type (RING finger)
67518bZIP transcription factor
797380232Fungal Zn(2)-Cys(6) binuclear cluster domain
24222369SNF2 family N-terminal domain
14141644Myb-like DNA-binding domain
55616Forkhead domain
43310SRF-type transcription factor (DNA-binding and dimerisation domain)
12121236GATA zinc finger
1225Transcription factor TFIID (or TATA-binding protein, TBP)
88925WW domain
54413HSF-type DNA-binding
11111133FHA domain
19162055HMG (high mobility group) box
44614Zinc finger, ZZ type
20282270Acetyltransferase (GNAT) family
29303291Zinc finger C-x8-C-x5-C-x3-H type (and similar)
1113B-box zinc finger
2226Copper fist DNA binding domain
15171345BTB/POZ domain
76821Histone-like transcription factor (CBF/NF-Y) and archaeal histone
20292978SET domain
1113G10 protein
2226ARID/BRIGHT DNA binding domain
1225NF-X1 type zinc finger
564762165MYND finger
1113TFIIE alpha subunit
1113CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
12221852AT hook motif
1113STE like transcription factor
2338SWIB/MDM2 domain
1113Transcriptional Coactivator p15 (PC4)
1113RFX DNA-binding domain
1113Transcription initiation factor IIA, gamma subunit, helical domain
75618JmjC domain, hydroxylase
44311Paired amphipathic helix repeat
1113Transcription initiation factor IIA, gamma subunit
1113DDT domain
1113MIZ/SP-RING zinc finger
1113C5HC2 zinc finger
1113SART-1 family
1113PHF5-like protein
1113Transcription initiation factor TFIID subunit A
3238Transcription factor Tfb2
2226BSD domain
3339CBF/Mak21 family
1113CCR4-Not complex component, Not1
1113Cell differentiation family, Rcd1-like
465053149Fungal specific transcription factor domain
2226NOT2 / NOT3 / NOT5 family
2226SNF5 / SMARCB1 / INI1
1124Transcriptional repressor TCF25
1113RNA pol II accessory factor, Cdc73 family, C-terminal
1113YL1 nuclear protein
1124Homeobox KN domain
1113MED7 protein
1113SGT1 protein
57719Basic region leucine zipper
1113Brf1-like TBP-binding domain
1113TFIIH C1-like domain
1113Apoptosis-antagonizing transcription factor, C-terminal
2327Sin3 family co-repressor
1113Multiprotein bridging factor 1
1214TFIIS helical bundle-like domain