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PATHWAYS • Neurospora crassa OR74A v2.0
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All identifiers:
Metabolomics and Transcriptomics
Select Pathway
Citric Acid Cycle
Pentose Phosphate Pathway
Superpathway of Glycolysis and Entner-Doudoroff
Urea Cycle
L-Proline Biosynthesis I (from L-glutamate)
L-Proline Biosynthesis II (from arginine)
Calvin-Benson-Bassham Cycle
Diacylglycerol and Triacylglycerol Biosynthesis
Starch Biosynthesis
Glyoxylate Cycle
Fatty Acid Elongation-Saturated
Chlorophyll Cycle
Chlorophyll a Biosynthesis II
3,8-Divinyl-Chlorophyllide a Biosynthesis I (aerobic, light-dependent)
Tetrapyrrole Biosynthesis I (from glutamate)
Superpathway of L-Citrulline Metabolism
Superpathway of Anthocyanin Biosynthesis (from cyanidin and cyanidin 3-O-glucoside)
Cholesterol Biosynthesis I
Choline Biosynthesis I
Nitrate Reduction II (assimilatory)
Thiamine Diphosphate Biosynthesis IV (eukaryotes)
L-Alanine Biosynthesis II
L-Arginine Biosynthesis I (via L-ornithine)
Flavonoid Biosynthesis
Trehalose Biosynthesis I
Rubisco Shunt
L-Leucine Biosynthesis
L-Lysine Biosynthesis VI
L-Threonine Biosynthesis
L-Homoserine Biosynthesis
Fatty Acid Biosynthesis (plant mitochondria)
L-Tryptophan Biosynthesis
Chlorophyll a Degradation III
Isoprene Biosynthesis I
Purine Nucleotides Degradation I (plants)
L-Selenocysteine Biosynthesis II (archaea and eukaryotes)
Glutathione Biosynthesis
Siroheme Biosynthesis
Vitamin E Biosynthesis (tocotrienols)
Oleate Biosynthesis I (plants)
γ-Glutamyl Cycle (plant pathway)
Superpathway of Purine Nucleotides de novo Biosynthesis I
Superpathway of Pyrimidine Ribonucleosides Salvage
Superpathway of Lipid-Dependent Phytate Biosynthesis
Sucrose Biosynthesis I (from photosynthesis)
Geranylgeranyl Diphosphate Biosynthesis
Chorismate Biosynthesis I
Flavin Biosynthesis I (bacteria and plants)
Gluconeogenesis I
Plant Sterol Biosynthesis II
Superpathway of Thiamine Diphosphate Biosynthesis III (eukaryotes)
Dipyrromethane Cofactor Biosynthesis
4-amino-2-methyl-5-diphosphomethylpyrimidine Biosynthesis II
Superpathway of Ergosterol Biosynthesis II
Superpathway of Choline Biosynthesis
Wax Esters Biosynthesis II
Wax Esters Biosynthesis I
Superpathway of Pyrimidine Deoxyribonucleotides De Novo Biosynthesis
Superpathway of Adenosine Nucleotides De Novo Biosynthesis I
Superpathway of Adenosine Nucleotides De Novo Biosynthesis II
Superpathway of Guanosine Nucleotides De Novo Biosynthesis I
Superpathway of Purine Nucleotides De Novo Biosynthesis I
Superpathway of L-Threonine Biosynthesis
L-Asparagine Biosynthesis I
L-Asparagine Degradation I
L-Glutamine Biosynthesis I
Glycine Biosynthesis II
PRPP Biosynthesis
Long-Chain Fatty Acid Activation
L-Serine Biosynthesis I
S-Adenosyl-L-Methionine Biosynthesis
Phosphate Acquisition
Superpathway of Acetate Utilization and Formation
Malate/L-Aspartate Shuttle Pathway
L-Proline Biosynthesis III (from L-Ornithine)
Allantoin Degradation to Glyoxylate II
3,8-Divinyl-Chlorophyllide a Biosynthesis III (Aerobic, Light Independent)
α-Carotene Biosynthesis
α-Linolenate Biosynthesis I (Plants and Red Algae)
β-Alanine Biosynthesis I
Chlorophyll b2 Biosynthesis
L-Methionine Biosynthesis II
L-Valine Biosynthesis
L-Tyrosine Biosynthesis II
L-Serine Biosynthesis II
L-Phenylalanine Biosynthesis III (Cytosolic, Plants)
Superpathway of L-Isoleucine Biosynthesis I
L-Cysteine Biosynthesis I
L-Histidine Biosynthesis
L-Aspartate Biosynthesis
L-Alanine Biosynthesis II
Glycine Biosynthesis I
Glycine Biosynthesis III
Nitric Oxide Biosynthesis I (Plants)
Terminal Olefins Biosynthesis II
Acetaldehyde Biosynthesis I
Heptadecane Biosynthesis
Acetaldehyde Biosynthesis II
Ophthalmate Biosynthesis
Cellulose Biosynthesis
Sulfate Activation for Sulfonation
Fructose 2,6-Bisphosphate Biosynthesis
Monoacylglycerol Metabolism (Yeast)
Very Long Chain Fatty Acid Biosynthesis II
Ultra-Long-Chain Fatty Acid Biosynthesis
Ceramide De Novo Biosynthesis
Guaiacol Biosynthesis
Sphingolipid Biosynthesis (Plants)
Superpathway of Plastoquinol Biosynthesis
NAD De Novo Biosynthesis I (from Aspartate)
NAD Salvage (Plants)
Glutathione-Peroxide Redox Reactions
Jasmonic Acid Biosynthesis
2-Oxoglutarate Decarboxylation to Succinyl-CoA
2-Oxoisovalerate Decarboxylation to Isobutanoyl-CoA
Tetrathionate Oxidation
Assimilatory Sulfate Reduction II
Nitrite Reduction (Hemoglobin)
Visualize Reactions
Experiment:
grouping
via header, e.g. group_condition
Plot type:
Heatmap
Circle indicator
Bar Chart
Bar Chart (Log10)
Bar Chart (grouped)
Line Chart
Pie Chart
grouping
via header, e.g. group_condition
Color scheme:
──── sequencial ────
blue
red
green
grey
yellow > green > blue
yellow > orange > red
──── diverging ────
red > blue
red > gray
brown > turquois
pink > green
red > yellow > blue
──── radial ────
spectral
cool
viridis
plasma
inferno
rainbow
──── categorical ────
category (10)
paired (12)
pastel (12)
Range:
Visualize Metabolites
Plot type:
Heatmap
Circle indicator
Bar Chart
Bar Chart (Log10)
Bar Chart (grouped)
Line Chart
Pie Chart
grouping
via header, e.g. group_condition
Color scheme:
──── sequential ────
blue
red
green
grey
yellow > green > blue
yellow > orange > red
──── diverging ────
red > blue
red > gray
brown > turquois
pink > green
red > yellow > blue
──── radial ────
spectral
cool
viridis
plasma
inferno
rainbow
──── categorical ────
category (10)
paired (12)
pastel (12)
Range:
Plot
Reset the map
Legends
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