1000 Fungal Genomes

This project aims to provide genomic information for every family of fungi. The list below includes sequenced fungal genomes, those in progress, and selected nominations. You can log in and nominate new species for genome sequencing in the families with no (green) or only one (yellow) reference genome if you can provide DNA/RNA samples for their sequencing (see JGI User Guidelines). If you know additional fungal species being sequenced somewhere but not reflected on this list, please register these projects in GOLD (use Add to GOLD link) or let us know.
Phylum Subphylum Class Order Family
Found 30 families, 36 genome project(s), 34 nomination(s).
Show families with
The species that have been nominated for sequencing by community are marked with asterisk.

Phylum name
Subphylum name
Class name
Order name
Family name
Genome Projects
ChytridiomycotaIncertae sedisChytridiomycetesChytridialesChytridiaceae
* Chytridium lagenaria WGS Timothy James, University of Michigan
* Phlyctochytrium arcticum WGS Rabern Simmons, UNKNOWN
* Phlyctochytrium aureliae Transcriptome
Rhizidium phycophilum WGS
ChytridiomycotaIncertae sedisChytridiomycetesChytridialesChytriomycetaceae
* Chytriomyces cf hyalinus nominated Mary Berbee, university of british columbia
* Chytriomyces cf. hyalinus JEL632 WGS Rabern Simmons, UNKNOWN
* Chytriomyces sp. MP71 WGS Timothy James, University of Michigan
* Entophlyctis helioformis WGS Timothy James, University of Michigan
* Entophlyctis luteolus WGS
* Obelidium mucronatum WGS Jason Stajich, University of California, Riverside
* Physocladia obscura WGS Mary Berbee, university of british columbia
* Rhizoclosmatium globosum WGS Jason Stajich, University of California, Riverside
ChytridiomycotaIncertae sedisChytridiomycetesChytridialesIncertae sedis
* Rhizoclosmatium hyalinus nominated Jason Stajich, University of California, Riverside
ChytridiomycotaIncertae sedisChytridiomycetesChytridialesSynchytriaceae
* Synchytrium clade WGS Mary Berbee, university of british columbia
Synchytrium endobioticum WGS
ChytridiomycotaIncertae sedisChytridiomycetesCladochytrialesCladochytriaceae
* Cladochytrium polystomum WGS Martha Powell, The University of Alabama
* Cladochytrium replicatum WGS Mary Berbee, university of british columbia
ChytridiomycotaIncertae sedisChytridiomycetesCladochytrialesEndochytriaceae
* Endochytriaceae sp. JEL 072 WGS
* cf Endochytriaceae nominated Mary Berbee, university of british columbia
ChytridiomycotaIncertae sedisChytridiomycetesCladochytrialesNowakowskiellaceae
* Nowakowskiella sp. JEL335 WGS Mary Berbee, university of british columbia
ChytridiomycotaIncertae sedisChytridiomycetesCladochytrialesSeptochytriaceae
None sequenced
ChytridiomycotaIncertae sedisChytridiomycetesIncertae sedisIncertae sedis
* Blyttiomyces helicus WGS Timothy James, University of Michigan
* uncultured Chytridiomycetes WGS
ChytridiomycotaIncertae sedisChytridiomycetesIncertae sedisOlpidiaceae
Olpidium bornovanus WGS
ChytridiomycotaIncertae sedisChytridiomycetesLobulomycetalesLobulomycetaceae
* Lobulomyces angularis WGS
ChytridiomycotaIncertae sedisChytridiomycetesPolychytrialesIncertae sedis
* Arkaya lepida WGS Mary Berbee, university of british columbia
* Polychytrium aggregatum WGS Mary Berbee, university of british columbia
ChytridiomycotaIncertae sedisChytridiomycetesRhizophlyctidalesArizonaphlyctidaceae
None sequenced
ChytridiomycotaIncertae sedisChytridiomycetesRhizophlyctidalesBorealophlyctidaceae
None sequenced
ChytridiomycotaIncertae sedisChytridiomycetesRhizophlyctidalesRhizoplyctidaceae
* Rhizophlyctis rosea nominated Mary Berbee, university of british columbia
ChytridiomycotaIncertae sedisChytridiomycetesRhizophlyctidalesSonoraphlyctidaceae
* Sonoraphlyctis ranzonii WGS Jon Magnuson, Pacific Northwest National Laboratory
ChytridiomycotaIncertae sedisChytridiomycetesRhizophydialesAngulomycetaceae
* Rhizophydiales sp. SB02 nominated Katelyn McKindles, Bowling Green State University
ChytridiomycotaIncertae sedisChytridiomycetesRhizophydialesAquamycetaceae
None sequenced
ChytridiomycotaIncertae sedisChytridiomycetesRhizophydialesGlobomycetaceae
* Globomyces pollinis-pini WGS Timothy James, University of Michigan
ChytridiomycotaIncertae sedisChytridiomycetesRhizophydialesGorgonomycetaceae
* Gorgonomyces haynaldii WGS Rabern Simmons, UNKNOWN
ChytridiomycotaIncertae sedisChytridiomycetesRhizophydialesIncertae sedis
Batrachochytrium dendrobatidis WGS John Taylor, University of California, Berkeley
Batrachochytrium salamandrivorans WGS
Homolaphlyctis polyrhiza WGS
* Operculomyces laminatus WGS Jason Stajich, University of California, Riverside
ChytridiomycotaIncertae sedisChytridiomycetesRhizophydialesKappamycetaceae
None sequenced
ChytridiomycotaIncertae sedisChytridiomycetesRhizophydialesOperculomycetaceae
None sequenced
ChytridiomycotaIncertae sedisChytridiomycetesRhizophydialesPateramycetaceae
None sequenced
ChytridiomycotaIncertae sedisChytridiomycetesRhizophydialesProtrudomycetaceae
None sequenced
ChytridiomycotaIncertae sedisChytridiomycetesRhizophydialesRhizophydiaceae
None sequenced
ChytridiomycotaIncertae sedisChytridiomycetesRhizophydialesTerramycetaceae
None sequenced
ChytridiomycotaIncertae sedisChytridiomycetesSpizellomycetalesCaulochytriaceae
* Caulochytrium protostelioides WGS Timothy James, University of Michigan
ChytridiomycotaIncertae sedisChytridiomycetesSpizellomycetalesPowellomycetaceae
* Fimicolochytrium jonesii WGS Rabern Simmons, UNKNOWN
* Geranomyces variabilis WGS Mary Berbee, university of british columbia
* Powellomyces hirtus WGS Rabern Simmons, UNKNOWN
ChytridiomycotaIncertae sedisChytridiomycetesSpizellomycetalesSpizellomycetaceae
* Gaertneriomyces semiglobifer WGS Timothy James, University of Michigan
Spizellomyces punctatus WGS Byoungnam Min, JGI