1000 Fungal Genomes

This project aims to provide genomic information for every family of fungi. The list below includes sequenced fungal genomes, those in progress, and selected nominations. You can log in and nominate new species for genome sequencing in the families with no (green) or only one (yellow) reference genome if you can provide DNA/RNA samples for their sequencing (see JGI User Guidelines). If you know additional fungal species being sequenced somewhere but not reflected on this list, please register these projects in GOLD (use Add to GOLD link) or let us know.
Phylum Subphylum Class Order Family
Found 38 families, 225 genome project(s), 185 nomination(s).
Show families with
The species that have been nominated for sequencing by community are marked with asterisk.

Phylum name
Subphylum name
Class name
Order name
Family name
Genome Projects
ZoopagomycotaEntomophthoromycotinaIncertae sedisEntomophthoralesAncylistaceae
Conidiobolus coronatus WGS Joseph Spatafora, Oregon State University
* Conidiobolus firmipilleus Resequencing
* Conidiobolus heterosporus Resequencing
Conidiobolus incongruus WGS
* Conidiobolus lamprauges Resequencing
* Conidiobolus megalotocus Resequencing
* Conidiobolus osmodes Resequencing
* Conidiobolus pumilus Resequencing
* Conidiobolus rhysosporus Resequencing
ZoopagomycotaEntomophthoromycotinaIncertae sedisEntomophthoralesCompletoriaceae
None sequenced
ZoopagomycotaEntomophthoromycotinaIncertae sedisEntomophthoralesEntomophthoraceae
* Entomophaga maimaga nominated Andrii Gryganskyi, Duke University
* Entomophaga maimaiga WGS
* Entomophthora muscae WGS Henrik De Fine Licht, University of Copenhagen
ZoopagomycotaEntomophthoromycotinaIncertae sedisEntomophthoralesIncertae sedis
* Basidiobolus meristosporus WGS Jason Stajich, University of California, Riverside
* Conidiobolus thromboides WGS Jason Stajich, University of California, Riverside
* Zoophthora radicans WGS Jason Stajich, University of California, Riverside
ZoopagomycotaEntomophthoromycotinaIncertae sedisEntomophthoralesMeristacraceae
None sequenced
ZoopagomycotaEntomophthoromycotinaIncertae sedisEntomophthoralesNeozygitaceae
None sequenced
ZoopagomycotaIncertae sedisIncertae sedisBasidiobolalesBasidiobolaceae
* Basidiobolus haptosporus nominated Jason Stajich, University of California, Riverside
* Basidiobolus ranarum WGS Jason Stajich, University of California, Riverside
ZoopagomycotaKickxellomycotinaIncertae sedisAsellarialesAsellariaceae
None sequenced
ZoopagomycotaKickxellomycotinaIncertae sedisDimargaritalesDimargaritaceae
* Dimargaris cristalligena WGS Tim James, U. Michigan
ZoopagomycotaKickxellomycotinaIncertae sedisHarpellalesHarpellaceae
None sequenced
ZoopagomycotaKickxellomycotinaIncertae sedisHarpellalesLegeriomycetaceae
Capniomyces stellatus WGS
Smittium culicis WGS
* Smittium culisetae nominated Joseph Spatafora, Oregon State University
Smittium mucronatum WGS
Zancudomyces culisetae WGS
ZoopagomycotaKickxellomycotinaIncertae sedisKickxellalesIncertae sedis
* Martensiomyces pterosporus WGS Andrii Gryganskyi, Duke University
* Ramicandelaber brevisporus WGS Andrii Gryganskyi, Duke University
ZoopagomycotaKickxellomycotinaIncertae sedisKickxellalesKickxellaceae
* Coemansia mojavensis WGS Ying Chang, Oregon State University
Coemansia reversa WGS Joseph Spatafora, Oregon State University
* Coemansia spiralis WGS Jason Stajich, University of California, Riverside
* Coemansia umbellata Resequencing
* Kickxella alabastrina WGS Jason Stajich, University of California, Riverside
* Linderina pennispora WGS Tim James, U. Michigan
* Spiromyces aspiralis nominated Jason Stajich, University of California, Riverside
ZoopagomycotaMortierellomycotinaIncertae sedisMortierellalesMortierellaceae
* Dissophora decumbens Resequencing
* Dissophora ornata WGS Gregory Bonito, Michigan State University
* Echinosporangium transversale nominated Jason Stajich, University of California, Riverside
* Gamsiella multidivaricata WGS Ying Chang, Oregon State University
* Haplosporangium bisporale Resequencing
* Haplosporangium fasciculatum Resequencing
* Haplosporangium gracile Resequencing
* Haplosporangium sp. Z 11 Resequencing
* Haplosporangium sp. Z 27 Resequencing
* Haplosporangium sp. Z 30 Resequencing
* Haplosporangium sp. Z 767 Resequencing
* Lobosporangium transversale WGS Jason Stajich, University of California, Riverside
* Mortierella alliacea Resequencing
Mortierella alpina WGS
* Mortierella ambigua Resequencing
* Mortierella amoeboidea Resequencing
* Mortierella antarctica Resequencing
* Mortierella beljakovae Resequencing
* Mortierella camargensis Resequencing
* Mortierella capitata Resequencing
* Mortierella chlamydospora Resequencing
* Mortierella claussenii Resequencing
* Mortierella clonocystis Resequencing
* Mortierella cystojenkinii Resequencing
* Mortierella dichotoma Resequencing
* Mortierella echinosphaera WGS
* Mortierella echinula Resequencing
Mortierella elongata WGS Andrii Gryganskyi, Duke University
* Mortierella epicladia Resequencing
* Mortierella epigama Resequencing
* Mortierella exigua Resequencing
* Mortierella fimbricystis Resequencing
Mortierella gamsii WGS
* Mortierella globulifera Resequencing
* Mortierella horticola Resequencing
* Mortierella humilis Resequencing
* Mortierella hyalina Resequencing
* Mortierella hygrophila Resequencing
* Mortierella lignicola Resequencing
* Mortierella minutissima Resequencing
Mortierella parvispora WGS
* Mortierella polycephala Resequencing
* Mortierella polygonia Resequencing
* Mortierella reticulata Resequencing
* Mortierella rostafinskii Resequencing
* Mortierella schmuckeri Resequencing
* Mortierella sclerotiella Resequencing
* Mortierella selenospora Resequencing
* Mortierella sepedonioides Resequencing
* Mortierella sp. Resequencing
* Mortierella sp. 14UC Resequencing
* Mortierella sp. AD010 Resequencing
* Mortierella sp. AD011 Resequencing
* Mortierella sp. AD030 Resequencing
* Mortierella sp. AD031 Resequencing
* Mortierella sp. AD032 Resequencing
* Mortierella sp. AD042 Resequencing
* Mortierella sp. AD094 Resequencing
* Mortierella sp. AM989 Resequencing
* Mortierella sp. GBA30 Resequencing
* Mortierella sp. GBA35 Resequencing
* Mortierella sp. GBA39 Resequencing
* Mortierella sp. GBA43 Resequencing
Mortierella sp. GBAus27b Transcriptome
* Mortierella sp. NVP3 Resequencing
* Mortierella sp. NVP41 Resequencing
* Mortierella sp. NVP85 Resequencing
* Mortierella sp. PMI86 Resequencing
* Mortierella strangulata Resequencing
* Mortierella thaxteri Resequencing
* Mortierella umbellata Resequencing
Mortierella verticillata WGS
* Mortierella vinacea Resequencing
* Mortierella wolfii Resequencing
ZoopagomycotaMucoromycotinaIncertae sedisEndogonalesEndogonaceae
Endogone aff. lactiflua nominated Leho Tedersoo, University of Tartu
* Endogone flammicorona nominated Joseph Spatafora, Oregon State University
* Endogone pisiformis WGS Joseph Spatafora, Oregon State University
* Endogone sp. TU116680 WGS Leho Tedersoo, University of Tartu
* Jimgerdemannia flammicorona WGS Gregory Bonito, Michigan State University
* Jimgerdemannia lactiflua WGS Gregory Bonito, Michigan State University
ZoopagomycotaMucoromycotinaIncertae sedisMucoralesBackusellaceae
* Backusella circina WGS Jason Stajich, University of California, Riverside
* Backusella lamprospora WGS
ZoopagomycotaMucoromycotinaIncertae sedisMucoralesChaetocladiaceae
* Chaetocladium brefeldii Resequencing
* Chaetocladium jonesii Transcriptome Jason Stajich, University of California, Riverside
ZoopagomycotaMucoromycotinaIncertae sedisMucoralesChoanephoraceae
* Blakeslea trispora WGS Joseph Spatafora, Oregon State University
Choanephora cucurbitarum WGS Derreck Carter-House, UCR
* Gilbertella hainanensis nominated Jon Magnuson, Pacific Northwest National Laboratory
* Gilbertella persicaria WGS Jason Stajich, University of California, Riverside
ZoopagomycotaMucoromycotinaIncertae sedisMucoralesCunninghamellaceae
* Absidia blakesleeana Resequencing
* Absidia coerulea Resequencing
* Absidia corymbifera Resequencing
* Absidia cylindrospora Resequencing
Absidia glauca WGS
* Absidia repens WGS Jason Stajich, University of California, Riverside
* Chlamydoabsidia padenii WGS Ying Chang, Oregon State University
* Cunninghamella antarctica Resequencing
Cunninghamella bertholletiae WGS
* Cunninghamella brunnea Resequencing
* Cunninghamella echinulata WGS Joseph Spatafora, Oregon State University
Cunninghamella elegans WGS
* Gongronella butleri WGS Ying Chang, Oregon State University
Gongronella sp. w5 WGS
* Halteromyces radiatus WGS Ying Chang, Oregon State University
* Hesseltinella vesiculosa WGS Timothy James, University of Michigan
ZoopagomycotaMucoromycotinaIncertae sedisMucoralesIncertae sedis
* Lichtheimia hyalospora WGS Jason Stajich, University of California, Riverside
* Umbelopsis ramanniana WGS Andrii Gryganskyi, Duke University
ZoopagomycotaMucoromycotinaIncertae sedisMucoralesLichtheimiaceae
* Circinella chinensis Resequencing
* Circinella minor Resequencing
* Circinella simplex Resequencing
* Dichotomocladium elegans WGS Jason Stajich, University of California, Riverside
* Dichotomocladium robustum WGS Jason Stajich, University of California, Riverside
* Fennellomyces heterothallicus Resequencing
* Fennellomyces sp. T-0311 WGS Jason Stajich, University of California, Riverside
* Fennellomyces verticellatus Resequencing
Lichtheimia corymbifera WGS
Lichtheimia ramosa WGS
* Phascolomyces articulosus WGS Ying Chang, Oregon State University
Rhizomucor variabilis WGS
* Thamnostylum nigricans Resequencing
* Thamnostylum piriforme Resequencing
Thermomucor indicae-seudaticae WGS
* Zychaea mexicana WGS Ying Chang, Oregon State University
ZoopagomycotaMucoromycotinaIncertae sedisMucoralesMucoraceae
Actinomucor elegans WGS
* Amylomyces rouxii WGS Timothy James, University of Michigan
Apophysomyces elegans WGS
* Apophysomyces sp. Resequencing
Apophysomyces trapeziformis WGS
Apophysomyes elegans
* Benjaminiella poitrasii WGS Joseph Spatafora, Oregon State University
* Benjaminiella youngii Resequencing
* Circinella umbellata WGS Joseph Spatafora, Oregon State University
Cokeromyces recurvatus WGS Ying Chang, Oregon State University
* Ellisomyces anomalus WGS Derreck Carter-House, UCR
* Helicostylum pulchrum WGS Ying Chang, Oregon State University
* Kirkomyces cordense WGS Ying Chang, Oregon State University
Mucor ambiguus WGS
Mucor circinelloides WGS Victoriano Garre, University of Murcia
* Mucor flavus Resequencing
* Mucor genevensis Resequencing
* Mucor heterogamus WGS Ying Chang, Oregon State University
* Mucor hiemalis Resequencing
Mucor indicus WGS
Mucor irregularis WGS
* Mucor luteus Resequencing
* Mucor mousanensis Resequencing
* Mucor nidicola Resequencing
* Mucor oblongisporus Resequencing
* Mucor odoratus Resequencing
* Mucor philippovi Resequencing
* Mucor piriformis WGS
Mucor racemosus WGS
Mucor ramosissimus WGS
* Mucor saturninus Resequencing
Mucor sp. WGS
Mucor velutinosus WGS
* Parasitella parasitica WGS Jason Stajich, University of California, Riverside
* Pilaira anomala WGS Ying Chang, Oregon State University
* Pilaira moreaui Resequencing
* Pirella circinans Resequencing
* Pirella naumovii Resequencing
* Pirella reniformis Resequencing
Rhizomucor miehei WGS
Rhizomucor pusillus WGS
Rhizopus delemar WGS
Rhizopus oryzae WGS Katherine McMahon, University of Wisconsin Madison
* Spinellus fusiger WGS Jason Stajich, University of California, Riverside
* Zygorhynchus heterogamus nominated Joseph Spatafora, Oregon State University
ZoopagomycotaMucoromycotinaIncertae sedisMucoralesMycocladaceae
None sequenced
ZoopagomycotaMucoromycotinaIncertae sedisMucoralesMycotyphaceae
* Mycotypha africana WGS Joseph Spatafora, Oregon State University
* Mycotypha indica WGS
* Mycotypha microspora Resequencing
ZoopagomycotaMucoromycotinaIncertae sedisMucoralesPhycomycetaceae
Phycomyces blakesleeanus WGS Igor Grigoriev, JGI
* Phycomyces nitens WGS Luis M. Corrochano, Universidad de Sevilla
ZoopagomycotaMucoromycotinaIncertae sedisMucoralesPilobolaceae
* Pilobolus crystallinus nominated Dale Beach, Longwood University
* Pilobolus umbonatus WGS Joseph Spatafora, Oregon State University
* Utharomyces epallocaulus WGS
ZoopagomycotaMucoromycotinaIncertae sedisMucoralesRadiomycetaceae
* Radiomyces mexicanus WGS
* Radiomyces spectabilis WGS Tim James, U. Michigan
ZoopagomycotaMucoromycotinaIncertae sedisMucoralesRhizopodaceae
Rhizopus chinensis WGS Byoungnam Min, JGI
* Rhizopus microsporus WGS Teresa Pawlowska, Cornell University
Rhizopus pusillus WGS
Rhizopus stolonifer WGS Derreck Carter-House, UCR
* Sporodiniella umbellata WGS Ying Chang, Oregon State University
* Syzygites megalocarpus WGS
ZoopagomycotaMucoromycotinaIncertae sedisMucoralesSaksenaeaceae
Saksenaea oblongispora WGS
Saksenaea vasiformis WGS
ZoopagomycotaMucoromycotinaIncertae sedisMucoralesSyncephalastraceae
Syncephalastrum monosporum WGS
* Syncephalastrum racemosum WGS Jason Stajich, University of California, Riverside
* Syncephalastrum verruculosum Resequencing
* Thamnostylum lucknowense WGS Tim James, U. Michigan
ZoopagomycotaMucoromycotinaIncertae sedisMucoralesThamnidiaceae
* Thamnidium elegans WGS Joseph Spatafora, Oregon State University
ZoopagomycotaMucoromycotinaIncertae sedisMucoralesUmbelopsidaceae
Umbelopsis dimorpha WGS
Umbelopsis isabellina WGS Gregory Bonito, Michigan State University
* Umbelopsis sp. Resequencing
* Umbelopsis sp. AD052 WGS Gregory Bonito, Michigan State University
* Umbelopsis sp. PMI_123 WGS Alejandro Rojas, Duke University
Umbelopsis sp. TLT204 WGS
* Umbelopsis vinacea Resequencing
ZoopagomycotaZoopagomycotinaIncertae sedisZoopagalesCochlonemataceae
None sequenced
ZoopagomycotaZoopagomycotinaIncertae sedisZoopagalesHelicocephalidaceae
Rhopalomyces elegans WGS
ZoopagomycotaZoopagomycotinaIncertae sedisZoopagalesIncertae sedis
None sequenced
ZoopagomycotaZoopagomycotinaIncertae sedisZoopagalesPiptocephalidaceae
* Piptocephalis cylindrospora WGS Timothy James, University of Michigan
* Syncephalis fulvum nominated Joseph Spatafora, Oregon State University
* Syncephalis fuscata WGS Jason Stajich, University of California, Riverside
* Syncephalis plumigaleata WGS Jason Stajich, University of California, Riverside
* Syncephalis pseudoplumigaleata WGS Tim James, U. Michigan
ZoopagomycotaZoopagomycotinaIncertae sedisZoopagalesSigmoideomycetaceae
* Thamnocephalis sphaerospora WGS Timothy James, University of Michigan
ZoopagomycotaZoopagomycotinaIncertae sedisZoopagalesZoopagaceae
None sequenced