1000 Fungal Genomes

This project aims to provide genomic information for every family of fungi. The list below includes sequenced fungal genomes, those in progress, and selected nominations. You can log in and nominate new species for genome sequencing in the families with no (green) or only one (yellow) reference genome if you can provide DNA/RNA samples for their sequencing (see JGI User Guidelines). If you know additional fungal species being sequenced somewhere but not reflected on this list, please register these projects in GOLD (use Add to GOLD link) or let us know.
Phylum Subphylum Class Order Family
Found 52 families, 102 genome project(s), 86 nomination(s).
Show families with
The species that have been nominated for sequencing by community are marked with asterisk.

Phylum name
Subphylum name
Class name
Order name
Family name
Genome Projects
BasidiomycotaPucciniomycotinaAgaricostilbomycetesAgaricostilbalesAgaricostilbaceae
* Agaricostilbum hyphaenes WGS Mary Aime, LSU AgCenter
* Bensingtonia ciliata WGS Marco Coelho, Universidade Nova de Lisboa
* Sterigmatomyces halophilus WGS Marco Coelho, Universidade Nova de Lisboa
BasidiomycotaPucciniomycotinaAgaricostilbomycetesAgaricostilbalesChionosphaeraceae
* Ballistosporomyces xanthus WGS
* Chionosphaera apobasidialis WGS Jon Magnuson, Pacific Northwest National Laboratory
* Chionosphaera cuniculicola WGS Jon Magnuson, Pacific Northwest National Laboratory
Cystobasidiopsis lactophilus WGS
* Kurtzmanomyces insolitus WGS Marco Coelho, Universidade Nova de Lisboa
* Mycogloea nipponica WGS Marco Coelho, Universidade Nova de Lisboa
* Sporobolomyces ruber nominated Marco Coelho, Universidade Nova de Lisboa
* Sporobolomyces xanthus nominated Marco Coelho, Universidade Nova de Lisboa
BasidiomycotaPucciniomycotinaAgaricostilbomycetesAgaricostilbalesIncertae sedis
* Bensingtonia sakaguchii nominated Marco Coelho, Universidade Nova de Lisboa
BasidiomycotaPucciniomycotinaAgaricostilbomycetesAgaricostilbalesKondoaceae
* Bensingtonia phyllada nominated Marco Coelho, Universidade Nova de Lisboa
* Kondoa malvinella WGS Marco Coelho, Universidade Nova de Lisboa
* Kondoa phyllada WGS
BasidiomycotaPucciniomycotinaAgaricostilbomycetesAgaricostilbalesRuineniaceae
* Ruinenia rubra WGS
BasidiomycotaPucciniomycotinaAgaricostilbomycetesIncertae sedisIncertae sedis
* Jianyunia sakaguchii WGS
BasidiomycotaPucciniomycotinaAgaricostilbomycetesSpiculogloealesSpiculogloeaceae
* Sporobolomyces linderae WGS Mary Aime, LSU AgCenter
BasidiomycotaPucciniomycotinaAtractiellomycetesAtractiellalesAtractogloeaceae
None sequenced
BasidiomycotaPucciniomycotinaAtractiellomycetesAtractiellalesIncertae sedis
Atractiellales sp. WGS Gregory Bonito, Michigan State University
BasidiomycotaPucciniomycotinaAtractiellomycetesAtractiellalesMycogelidiaceae
None sequenced
BasidiomycotaPucciniomycotinaAtractiellomycetesAtractiellalesPhleogenaceae
None sequenced
BasidiomycotaPucciniomycotinaAtractiellomycetesAtractiellalesSaccoblastiaceae
None sequenced
BasidiomycotaPucciniomycotinaClassiculomycetesClassiculalesClassiculaceae
* Naiadella fluitans WGS Mary Aime, LSU AgCenter
BasidiomycotaPucciniomycotinaCryptomycocolacomycetesCryptomycocolacalesCryptomycocolacaceae
None sequenced
BasidiomycotaPucciniomycotinaCystobasidiomycetesCystobasidialesCystobasidiaceae
* Cystobasidium fimetarium WGS Marco Coelho, Universidade Nova de Lisboa
* Cystobasidium laryngis WGS
* Cystobasidium lysinophilum WGS
Cystobasidium pallidum WGS
* Occultifur externus nominated Marco Coelho, Universidade Nova de Lisboa
* Rhodotorula laryngis nominated Marco Coelho, Universidade Nova de Lisboa
* Rhodotorula lysiniphila nominated Marco Coelho, Universidade Nova de Lisboa
* Rhodotorula minuta WGS Mary Aime, LSU AgCenter
BasidiomycotaPucciniomycotinaCystobasidiomycetesErythrobasidialesErythrobasidiaceae
* Bannoa hahajimensis WGS Marco Coelho, Universidade Nova de Lisboa
* Erythrobasidium hasegawianum WGS Mary Aime, LSU AgCenter
Erythrobasidium yunnanense WGS
* Rhodotorula lactosa WGS Jon Magnuson, Pacific Northwest National Laboratory
* Sporobolomyces gracilis nominated Jon Magnuson, Pacific Northwest National Laboratory
* Sporobolomyces symmetricus nominated Jon Magnuson, Pacific Northwest National Laboratory
BasidiomycotaPucciniomycotinaCystobasidiomycetesErythrobasidialesIncertae sedis
None sequenced
BasidiomycotaPucciniomycotinaCystobasidiomycetesIncertae sedisIncertae sedis
* Buckleyzyma aurantiaca WGS
* Buckleyzyma phyllomatis WGS
* Cyrenella elegans WGS Marco Coelho, Universidade Nova de Lisboa
* Rhodotorula aurantiaca nominated Marco Coelho, Universidade Nova de Lisboa
* Rhodotorula lamellibrachii nominated Marco Coelho, Universidade Nova de Lisboa
* Rhodotorula marina nominated Marco Coelho, Universidade Nova de Lisboa
* Sakaguchia dacryoidea WGS Marco Coelho, Universidade Nova de Lisboa
* Sakaguchia lamellibrachiae WGS
* Sporobolomyces oryzicola nominated Marco Coelho, Universidade Nova de Lisboa
* Sporobolomyces phyllomatis nominated Marco Coelho, Universidade Nova de Lisboa
* Symmetrospora gracilis WGS Joseph Spatafora, Oregon State University
* Symmetrospora marina WGS
* [Sporobolomyces] oryzicola WGS
BasidiomycotaPucciniomycotinaCystobasidiomycetesNaohidealesNaohideaceae
* Naohidea sebacea WGS Mary Aime, LSU AgCenter
BasidiomycotaPucciniomycotinaIncertae sedisIncertae sedisIncertae sedis
* Pucciniomycotina sp. nov. nominated Catherine Aime, Purdue University
* SA 808 nominated Mary Aime, LSU AgCenter
BasidiomycotaPucciniomycotinaIncertae sedisSporidiobolalesIncertae sedis
Rhodosporidium toruloides WGS
* Rhodotorula colostri nominated Marco Coelho, Universidade Nova de Lisboa
Rhodotorula graminis WGS Sharon Doty
Rhodotorula taiwanensis WGS
* Sporidiobolus pararoseus WGS Jon Magnuson, Pacific Northwest National Laboratory
Sporobolomyces roseus WGS Kenneth Wolfe
BasidiomycotaPucciniomycotinaMicrobotryomycetesHeterogastridialesHeterogastridiaceae
* Heterogastridium pycnidioideum WGS Mary Aime, LSU AgCenter
* Hyalopycnis blepharistoma WGS Jon Magnuson, Pacific Northwest National Laboratory
BasidiomycotaPucciniomycotinaMicrobotryomycetesIncertae sedisChrysozymaceae
* Sampaiozyma vanillica WGS
* Slooffia pilati WGS David Culley, Pacific Northwest National Labs
* Udeniozyma ferulica WGS
* Yunzhangia sonckii WGS
BasidiomycotaPucciniomycotinaMicrobotryomycetesIncertae sedisIncertae sedis
* Colacogloea peniophorae WGS Marco Coelho, Universidade Nova de Lisboa
* Curvibasidium cygneicollum WGS Marco Coelho, Universidade Nova de Lisboa
* Reniforma strues WGS Marco Coelho, Universidade Nova de Lisboa
* Rhodotorula ferulica nominated Marco Coelho, Universidade Nova de Lisboa
* Rhodotorula sonckii nominated Marco Coelho, Universidade Nova de Lisboa
* Rhodotorula vanillica nominated Marco Coelho, Universidade Nova de Lisboa
Rhodotorula yingtan WGS
BasidiomycotaPucciniomycotinaMicrobotryomycetesKriegerialesCamptobasidiaceae
* Camptobasidium hydrophilum WGS Marco Coelho, Universidade Nova de Lisboa
* Glaciozyma antarctica WGS Marco Coelho, Universidade Nova de Lisboa
BasidiomycotaPucciniomycotinaMicrobotryomycetesKriegerialesKriegeriaceae
* Meredithblackwellia eburnea WGS Mary Aime, LSU AgCenter
* Rhodotorula pilatii nominated Jon Magnuson, Pacific Northwest National Laboratory
BasidiomycotaPucciniomycotinaMicrobotryomycetesLeucosporidialesLeucosporidiaceae
* Leucosporidiella creatinivora nominated Kyria Boundy-Mills, University of California Davis
* Leucosporidium antarcticum nominated Jon Magnuson, Pacific Northwest National Laboratory
* Leucosporidium creatinivorum WGS David Culley, Pacific Northwest National Labs
* Leucosporidium fellii WGS
* Leucosporidium intermedium WGS
Leucosporidium scottii Transcriptome
* Mastigobasidium intermedium nominated Marco Coelho, Universidade Nova de Lisboa
BasidiomycotaPucciniomycotinaMicrobotryomycetesMicrobotryalesMicrobotryaceae
Microbotryum intermedium WGS
Microbotryum lychnidis-dioicae WGS
Microbotryum saponariae WGS
Microbotryum violaceum WGS
BasidiomycotaPucciniomycotinaMicrobotryomycetesMicrobotryalesUstilentylomataceae
* Rhodotorula hordea nominated Marco Coelho, Universidade Nova de Lisboa
* Ustilentyloma graminis WGS
BasidiomycotaPucciniomycotinaMicrobotryomycetesSporidiobolalesSporidiobolaceae
* Rhodosporidiobolus colostri WGS
Rhodotorula glutinis WGS Alberto Rodriguez, JBEI
* Rhodotorula mucilaginosa WGS Marco Coelho, Universidade Nova de Lisboa
Rhodotorula sp. FNED7-22 WGS
Rhodotorula sp. J31 WGS Alberto Rodriguez, JBEI
Rhodotorula toruloides WGS Alberto Rodriguez, JBEI
Sporidiobolus salmonicolor WGS
BasidiomycotaPucciniomycotinaMixiomycetesMixialesMixiaceae
Mixia osmundae WGS Joseph Spatafora, Oregon State University
BasidiomycotaPucciniomycotinaPucciniomycetesHelicobasidialesHelicobasidiaceae
* Helicobasidium mompa WGS Mary Aime, LSU AgCenter
BasidiomycotaPucciniomycotinaPucciniomycetesPachnocybalesPachnocybaceae
None sequenced
BasidiomycotaPucciniomycotinaPucciniomycetesPlatygloealesEocronartiaceae
* Eocronartium muscicola WGS Mary Aime, LSU AgCenter
BasidiomycotaPucciniomycotinaPucciniomycetesPlatygloealesPlatygloeaceae
* Platygloea disciformis WGS Mary Aime, LSU AgCenter
BasidiomycotaPucciniomycotinaPucciniomycetesPuccinialesChaconiaceae
None sequenced
BasidiomycotaPucciniomycotinaPucciniomycetesPuccinialesColeosporiaceae
None sequenced
BasidiomycotaPucciniomycotinaPucciniomycetesPuccinialesCronartiaceae
Cronartium comandrae WGS
Cronartium quercuum WGS John M. Davis, University of Florida
Cronartium ribicola WGS
Endocronartium harknessii WGS
BasidiomycotaPucciniomycotinaPucciniomycetesPuccinialesIncertae sedis
Hemileia vastatrix WGS
BasidiomycotaPucciniomycotinaPucciniomycetesPuccinialesMelampsoraceae
Melampsora Americana WGS Christine Smart, Cornell University
Melampsora abietis-canadensis WGS
Melampsora aecidioides WGS
* Melampsora allii-populina WGS Sebastien Duplessis, INRA
Melampsora larici-populina WGS Igor Grigoriev, JGI
Melampsora lini WGS
Melampsora medusae WGS Marie-Josée Bergeron, Natural Resources Canada
Melampsora occidentalis WGS
Melampsora pinitorqua WGS
* Melampsora x columbiana WGS Posy Busby, Oregon State University
BasidiomycotaPucciniomycotinaPucciniomycetesPuccinialesMikronegeriaceae
None sequenced
BasidiomycotaPucciniomycotinaPucciniomycetesPuccinialesPhakopsoraceae
Phakopsora pachyrhizi WGS Sebastien Duplessis, INRA
BasidiomycotaPucciniomycotinaPucciniomycetesPuccinialesPhragmidiaceae
None sequenced
BasidiomycotaPucciniomycotinaPucciniomycetesPuccinialesPileolariaceae
* Uromycladium tepperianum WGS Alistair McTaggart, University of Pretoria
BasidiomycotaPucciniomycotinaPucciniomycetesPuccinialesPucciniaceae
Puccinia arachidis WGS
Puccinia coronata avenae
Puccinia graminis WGS
Puccinia horiana WGS
Puccinia psidii WGS
Puccinia sorghi WGS
Puccinia striiformis WGS
Puccinia striiformis f. sp. tritici
Puccinia triticina WGS Byoungnam Min, JGI
Uromyces viciae-fabae WGS
BasidiomycotaPucciniomycotinaPucciniomycetesPuccinialesPucciniastraceae
None sequenced
BasidiomycotaPucciniomycotinaPucciniomycetesPuccinialesPucciniosiraceae
None sequenced
BasidiomycotaPucciniomycotinaPucciniomycetesPuccinialesRaveneliaceae
* Ravenelia hieronymi nominated Alistair McTaggart, University of Pretoria
BasidiomycotaPucciniomycotinaPucciniomycetesPuccinialesUncolaceae
None sequenced
BasidiomycotaPucciniomycotinaPucciniomycetesPuccinialesUropyxidaceae
None sequenced
BasidiomycotaPucciniomycotinaPucciniomycetesSeptobasidialesSeptobasidiaceae
* Septobasidium canescens WGS
* Septobasidium carestianum nominated Mary Aime, LSU AgCenter
* Septobasidium sp. PNB30-8B WGS Romina Gazis, University of Tennessee
BasidiomycotaPucciniomycotinaTritirachiomycetesTritirachialesTritirachiaceae
* Tritirachium sp. nominated Mary Aime, LSU AgCenter
* Tritirachium sp. CBS 265.96 WGS Merje Toome, Purdue University