An Error Occurred:

/pages/search-for-genes.xhtml @199,68 value="#{dataUsagePolicy.body}": Error reading [body] on type [gov.doe.jgi.portal.view.pages.DataUsagePolicy]

+ Stack Trace

javax.el.ELException: /pages/search-for-genes.xhtml @199,68 value="#{dataUsagePolicy.body}": Error reading [body] on type [gov.doe.jgi.portal.view.pages.DataUsagePolicy]
	at com.sun.facelets.el.TagValueExpression.getValue(TagValueExpression.java:76)
	at javax.faces.component.ComponentStateHelper.eval(ComponentStateHelper.java:194)
	at javax.faces.component.ComponentStateHelper.eval(ComponentStateHelper.java:182)
	at javax.faces.component.UIOutput.getValue(UIOutput.java:174)
	at com.sun.faces.renderkit.html_basic.HtmlBasicInputRenderer.getValue(HtmlBasicInputRenderer.java:205)
	at com.sun.faces.renderkit.html_basic.HtmlBasicRenderer.getCurrentValue(HtmlBasicRenderer.java:355)
	at com.sun.faces.renderkit.html_basic.HtmlBasicRenderer.encodeEnd(HtmlBasicRenderer.java:164)
	at javax.faces.component.UIComponentBase.encodeEnd(UIComponentBase.java:924)
	at javax.faces.component.UIComponent.encodeAll(UIComponent.java:1863)
	at javax.faces.component.UIComponent.encodeAll(UIComponent.java:1859)
	at com.sun.facelets.FaceletViewHandler.renderView(FaceletViewHandler.java:592)
	at org.ajax4jsf.application.ViewHandlerWrapper.renderView(ViewHandlerWrapper.java:100)
	at org.ajax4jsf.application.AjaxViewHandler.renderView(AjaxViewHandler.java:176)
	at gov.doe.jgi.portal.view.common.DefaultViewHandler.renderView(DefaultViewHandler.java:154)
	at com.sun.faces.lifecycle.RenderResponsePhase.execute(RenderResponsePhase.java:120)
	at com.sun.faces.lifecycle.Phase.doPhase(Phase.java:101)
	at com.sun.faces.lifecycle.LifecycleImpl.render(LifecycleImpl.java:219)
	at javax.faces.webapp.FacesServlet.service(FacesServlet.java:647)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:231)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
	at org.ajax4jsf.webapp.BaseXMLFilter.doXmlFilter(BaseXMLFilter.java:206)
	at org.ajax4jsf.webapp.BaseFilter.handleRequest(BaseFilter.java:290)
	at org.ajax4jsf.webapp.BaseFilter.processUploadsAndHandleRequest(BaseFilter.java:388)
	at org.ajax4jsf.webapp.BaseFilter.doFilter(BaseFilter.java:515)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
	at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:53)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
	at gov.doe.jgi.portal.view.log.LogFilter.doFilter(LogFilter.java:82)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
	at gov.doe.jgi.portal.view.common.StaticContentFilter.doFilter(StaticContentFilter.java:299)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
	at gov.doe.jgi.portal.framework.view.RequestLifecicleAwareFilter.doFilter(RequestLifecicleAwareFilter.java:39)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
	at gov.doe.jgi.portal.framework.config.ConfigFilter.doFilter(ConfigFilter.java:27)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
	at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:199)
	at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:96)
	at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:490)
	at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:139)
	at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:92)
	at org.apache.catalina.valves.RemoteIpValve.invoke(RemoteIpValve.java:685)
	at gov.doe.jgi.portal.tomcat.SessionInvalidateValve.invoke(SessionInvalidateValve.java:80)
	at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:74)
	at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:343)
	at org.apache.coyote.ajp.AjpProcessor.service(AjpProcessor.java:394)
	at org.apache.coyote.AbstractProcessorLight.process(AbstractProcessorLight.java:66)
	at org.apache.coyote.AbstractProtocol$ConnectionHandler.process(AbstractProtocol.java:770)
	at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1415)
	at org.apache.tomcat.util.net.SocketProcessorBase.run(SocketProcessorBase.java:49)
	at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
	at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
	at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
	at java.base/java.lang.Thread.run(Thread.java:834)
Caused by: java.lang.RuntimeException: Missing data release policy file:general-data-usage-policy.html for organism:Settur3
	at gov.doe.jgi.portal.view.pages.DataUsagePolicy.getBody(DataUsagePolicy.java:152)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
	at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.base/java.lang.reflect.Method.invoke(Method.java:566)
	at javax.el.BeanELResolver.getValue(BeanELResolver.java:94)
	at com.sun.faces.el.DemuxCompositeELResolver._getValue(DemuxCompositeELResolver.java:176)
	at com.sun.faces.el.DemuxCompositeELResolver.getValue(DemuxCompositeELResolver.java:203)
	at org.apache.el.parser.AstValue.getValue(AstValue.java:169)
	at org.apache.el.ValueExpressionImpl.getValue(ValueExpressionImpl.java:190)
	at org.jboss.weld.el.WeldValueExpression.getValue(WeldValueExpression.java:50)
	at com.sun.facelets.el.TagValueExpression.getValue(TagValueExpression.java:71)
	... 58 more

+ Component Tree

<AjaxViewRoot id="_viewRoot" immediate="false" inView="true" locale="en_US" renderKitId="HTML_BASIC" renderRegionOnly="false" rendered="true" selfRendered="false" submitted="false" transient="false" viewId="/pages/search-for-genes.xhtml">
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd" >
<html xmlns="http://www.w3.org/1999/xhtml"> <head>
<HtmlOutputText escape="false" id="j_id4" inView="true" rendered="true" transient="false" value="<meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1"> <link rel="stylesheet" type="text/css" href="/css/genome2.css"/> <link rel="stylesheet" type="text/css" href="/css/mycocosm_genomes.css"/> <!--[if lt IE 8]> <script src="/js/IE8.js" type="text/javascript"></script> <![endif]--> <script type="text/javascript" src="/js/ie_workarounds.js"></script> <!--[if IE 6]> <link type="text/css" rel="stylesheet" href="/css/ie6.css"> <![endif]--> <title>Search - Setosphaeria turcica NY001 v2.0</title> <link rel="stylesheet" type="text/css" href="/css/all-fungal-genomes.css"/> <link rel="stylesheet" type="text/css" href="/css/mycocosm_genomes.css"/> <script type="text/javascript" src="/jquery/jquery-3.3.1.js"> </script> <script type="text/javascript" src="/bootstrap-4.1.3/js/popper.js"></script> <script type="text/javascript" src="/jqueryui/1.12.1/jquery-ui.min.js"></script> <link rel="stylesheet" href="/jqueryui/1.12.1/jquery-ui.css" /> <script type="text/javascript" src="/bootstrap-4.1.3/js/bootstrap.js"></script> <link rel="stylesheet" href="/mycocosm/bootstrap-fix.css" /> <script type="text/javascript" src="/mycocosm/spin.js"></script> <script type="text/javascript" src="/mycocosm/mycocosm-support.js"></script> <script type="text/javascript" src="/mycocosm/svg-support.js"></script> <script type="text/javascript">(function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){ (i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o), m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m) })(window,document,'script','//www.google-analytics.com/analytics.js','ga'); ga('create', 'UA-54904231-1', 'auto'); ga('send', 'pageview'); var _gaq = _gaq || [];</script> "/>
<script type="text/javascript" src="/js/jquery.timers.js"/> <script type="text/javascript" src="/dwr/interface/Search.js"> </script> <script type="text/javascript" src="/dwr/engine.js"> </script> <link type="text/css" rel="stylesheet" href="/pages/search-for-genes.css"/> <script type="text/javascript" src="/pages/search-for-genes.js"/>
</head> <body class="#{headerBean.bodyClass}"> <div class="header_open" id="fold_control_panel"/> <div id="foldable">
<HtmlOutputText escape="false" id="j_id7" inView="true" rendered="true" transient="false" value="<div class="header_wrap"> <header id="jgi-header"> <div id="jgi-logo"> <a href="/mycocosm/home" title="DOE Joint Genome Institute - JGI MycoCosm" target="_parent"> <img src="/mycocosm/mycocosm-banner.png" alt="DOE Joint Genome Institute's MycoCosm logo" /> </a> </div> <nav class="jgi-nav"> <ul> <li id="skipto"> <a href="#skipnav" accesskey="S">Skip To Main Content</a> </li> <li> <a href="https://jgi.doe.gov" target="_parent">JGI Home</a> </li> <li> <a href="https://genome.jgi.doe.gov/portal" target="_parent">Genome Portal</a> </li> <li> <a class="textlink" id="mycocosm" target="_parent" href="https://mycocosm.jgi.doe.gov/mycocosm/home">MycoCosm</a> </li> <li> <a class="textlink" id="phycocosm" target="_parent" href="https://phycocosm.jgi.doe.gov/phycocosm/home">PhycoCosm</a> </li> <li> <a class="textlink" id="login" target="_parent" href="javascript: if(top.window.location.href.search('accessDenied')==-1) { document.cookie='jgi_return=' + escape(top.window.location.href) + '; domain=jgi.doe.gov; path=/;'; } top.window.location.href='https://signon.jgi.doe.gov/signon';">Login</a> </li> </ul> </nav> </header> <div class="header_top float_right"> <div class="organismName">Search • Setosphaeria turcica NY001 v2.0</div> </div> </div> <nav> <div class="menu_holder"> <div class="menu_group"> <ul> <li class="nohide"> <a class="selected" href="/pages/search-for-genes.jsf?organism=Settur3" target="_parent" title="">Search</a> </li> <li class="nohide"> <a class="" href="/pages/blast-query.jsf?db=Settur3" target="_parent" title="">BLAST</a> </li> <li class="nohide"> <a class="" href="/cgi-bin/browserLoad?db=Settur3&position=scaffold_1:1-100000" target="_parent" title="">Browse</a> </li> <li class="nohide"> <a class="" href="#" data-toggle="dropdown">Annotations <span class="caret navigation-menu-caret"></a> <div class="dropdown-menu navigation-menu"> <a class="submenu " href="/cgi-bin/ToGo?species=Settur3" target="_parent" title="">Gene Ontology</a> <a class="submenu " href="/mycocosm/annotations/browser/pfam/summary?p=Settur3" target="_parent" title="">PFAM Domains</a> <a class="submenu " href="/cgi-bin/metapathways?db=Settur3" target="_parent" title="">KEGG</a> <a class="submenu " href="/cgi-bin/kogBrowser?db=Settur3" target="_parent" title="">KOG</a> <a class="submenu " href="/pages/sm-clusters-summary.jsf?organism=Settur3&genomes=Settur3,Settur1,Settu3,Settu1,Cocmi1,CocheC4_1,Cocvi1,Cocsa1,Cocca1,Coclu2" target="_parent" title="">Secondary Metabolism Clusters</a> <a class="submenu " href="/mycocosm/annotations/browser/cazy/summary?p=Settur3" target="_parent" title="">CAZymes</a> <a class="submenu " href="/mycocosm/annotations/browser/merops/summary?p=Settur3" target="_parent" title="">Peptidases</a> <a class="submenu " href="/mycocosm/annotations/browser/tcdb/summary?p=Settur3" target="_parent" title="">Transporters</a> <a class="submenu " href="/mycocosm/annotations/browser/transfactor/summary?p=Settur3" target="_parent" title="">Transcription Factors</a> </div> </li> <li class="nohide"> <a class="" href="/clm/run/Setosphaeria-comparative.2085?organism=Settur3" target="_parent" title="Comparative clustering run for Settur3">MCL Clusters</a> </li> <li class="nohide"> <a class="" href="/vista_embed/?organism=Settur3" target="_parent" title="Synteny runs for 'Settur3'">Synteny</a> </li> <li class="nohide"> <a class="" href="https://genome.jgi.doe.gov/portal/Settur3/Settur3.download.html" target="_blank" title="">Download</a> </li> <li class="nohide"> <a class="" href="/Settur3/Settur3.info.html" target="_parent" title="">Info</a> </li> <li class="nohide"> <a class="" href="/Settur3/Settur3.home.html" target="_parent" title="">Home</a> </li> <li class="nohide"> <a class="" href="https://genome.jgi.doe.gov/portal/pages/projectStatus.jsf?db=Settur3" target="_blank" title="">Status</a> </li> <li class="nohide"> <a class="menu_help" href="javascript:;" alt="load context-sensitive help" onclick="window.open('/api/help?referer=' + escape(location.href), 'small', 'height=600,width=980,status=0,titlebar=0,toolbar=1,location=0,menubar=0,scrollbars=1,resizable=1');" target="_parent" title="">HELP!</a> </li> </ul> </div> </div> </nav> "/>
<HtmlAjaxOutputPanel ajaxRendered="false" id="j_id8" inView="true" keepTransient="true" layout="block" rendered="false" styleClass="divider" transient="false"/>
<HtmlAjaxOutputPanel ajaxRendered="false" id="j_id9" inView="true" keepTransient="true" layout="block" rendered="false" styleClass="grey_row" transient="false">
<br/>
</HtmlAjaxOutputPanel>
</div> <div class="clear"/>
<div class="home">
<HtmlForm enctype="application/x-www-form-urlencoded" id="search_for_genes" inView="true" prependId="true" rendered="true" submitted="false" transient="false">
<div style="clear:both"/> <div class="section_container" style="margin-bottom:0"> <div class="sub_section">
<HtmlOutputLink disabled="false" id="j_id14" inView="true" rendered="false" styleClass="old-search" transient="false">
Old Search
</HtmlOutputLink>
<HtmlOutputLink disabled="false" id="j_id16" inView="true" rendered="false" styleClass="old-search" transient="false">
Old Advanced Search
</HtmlOutputLink>
<div class="search-criteria"> <div class="together">
<HtmlOutputLabel escape="true" for="searchCriteria" id="j_id19" inView="true" rendered="true" style="display: none" styleClass="label" transient="false" value="Query input"/>
<HtmlInputText disabled="false" id="searchCriteria" immediate="false" inView="true" localValueSet="false" maxlength="-2147483648" readonly="false" rendered="true" required="false" size="-2147483648" styleClass="query_field" transient="false" valid="true"/>
<HtmlCommandButton action="#{searchForGenes.go}" actionExpression="#{searchForGenes.go}" disabled="false" id="search_button" immediate="false" inView="true" readonly="false" rendered="true" style="margin:0 25px 0 5px" styleClass="button_styled" transient="false" type="submit" value="Search"/>
</div> <div class="clear"/>
<HtmlAjaxOutputPanel ajaxRendered="false" id="helpMessage" inView="true" keepTransient="true" layout="block" rendered="true" styleClass="form_instructions" transient="false">
<HtmlOutputText escape="false" id="j_id21" inView="true" rendered="true" transient="false" value=""/>
</HtmlAjaxOutputPanel>
<HtmlAjaxOutputPanel ajaxRendered="false" id="validationMessage" inView="true" keepTransient="true" layout="block" rendered="true" transient="false">
<HtmlOutputText escape="false" id="j_id22" inView="true" rendered="false" styleClass="validation_error" transient="false" value=""/>
</HtmlAjaxOutputPanel>
<div class="clear"/> <div class="clear"/> <div class="together">
<HtmlOutputLabel escape="true" for="usecase" id="j_id24" inView="true" rendered="true" styleClass="label" transient="false" value="Search By:"/>
<br/>
<HtmlSelectOneMenu disabled="false" id="usecase" immediate="false" inView="true" localValueSet="false" readonly="false" rendered="true" required="false" styleClass="query" transient="false" valid="true" value="SearchForGeneByKeywords">
org.ajax4jsf.ajax.SUPPORTonchange
<HtmlAjaxSupport ajaxSingle="false" bypassUpdates="false" disableDefault="false" disabled="false" event="onchange" id="j_id26" ignoreDupResponses="false" immediate="false" inView="true" limitToList="false" rendered="true" requestDelay="-2147483648" timeout="-2147483648" transient="false"/>
<UISelectItems id="j_id27" inView="true" rendered="true" transient="false"/>
</HtmlSelectOneMenu>
</div> <div class="together">
<HtmlOutputLabel escape="true" for="tracks" id="j_id29" inView="true" rendered="true" styleClass="label" transient="false" value="Across:"/>
<br/>
<HtmlSelectOneMenu disabled="false" id="tracks" immediate="false" inView="true" localValueSet="false" readonly="false" rendered="true" required="false" styleClass="query" transient="false" valid="true" value="default_track">
<UISelectItems id="j_id31" inView="true" rendered="true" transient="false"/>
</HtmlSelectOneMenu>
</div> <!-- <div class="together"> <h:outputLabel class="label" value="Sort:" for="sortOption" /><br /> <h:selectOneMenu styleClass="query" id="sortOption" value="#{searchForGenes.sortBy}"> <f:selectItems value="#{searchForGenes.allSorts}"/> </h:selectOneMenu> </div> --> <div class="together">
<HtmlOutputLabel escape="true" for="termsOption" id="j_id33" inView="true" rendered="true" styleClass="label" transient="false" value="Terms:"/>
<br/>
<HtmlSelectOneMenu disabled="false" id="termsOption" immediate="false" inView="true" localValueSet="false" readonly="false" rendered="true" required="false" styleClass="query" transient="false" valid="true" value="exact">
<UISelectItems id="j_id35" inView="true" rendered="true" transient="false"/>
</HtmlSelectOneMenu>
</div> </div> <div class="clear"/> </div> </div> <div class="section_container" style="margin-top:0;background-color: #d6d8db;"> <div class="sub_section"> <div class="together">
<HtmlOutputText escape="false" id="j_id37" inView="true" rendered="true" transient="false" value="<button type="button" id="download_button" title="Download" name="Download" disabled="disabled" >Download</button>"/>
</div> <div class="together">
<HtmlOutputLabel escape="true" for="downloadOption" id="j_id39" inView="true" rendered="true" style="display: none" styleClass="label" transient="false" value="File type"/>
<HtmlSelectOneMenu disabled="false" id="downloadOption" immediate="false" inView="true" localValueSet="false" readonly="false" rendered="true" required="false" styleClass="query" transient="false" valid="true" value="asCSV">
<UISelectItems id="j_id40" inView="true" rendered="true" transient="false"/>
</HtmlSelectOneMenu>
</div> <div class="together">
<HtmlOutputLabel escape="true" for="compressOption" id="j_id42" inView="true" rendered="true" style="display: none" styleClass="label" transient="false" value="Compressed by"/>
<HtmlSelectOneMenu disabled="false" id="compressOption" immediate="false" inView="true" localValueSet="false" readonly="false" rendered="true" required="false" styleClass="query" transient="false" valid="true" value="gzip">
<UISelectItems id="j_id43" inView="true" rendered="true" transient="false"/>
</HtmlSelectOneMenu>
</div><div class="clear"/> </div> </div>
<HtmlAjaxOutputPanel ajaxRendered="false" id="j_id45" inView="true" keepTransient="true" layout="block" rendered="false" transient="false">
<div id="tabl_totals"> <div class="l">Total genes found:</div> <div class="v">${searchForGenes.totalGenesFoundFormatted}</div> </div> <div id="tabl_nav">
<HtmlDatascroller ajaxSingle="true" align="center" boundaryControls="show" bypassUpdates="false" fastControls="show" fastStep="0" for="results_table" id="results_scroller" ignoreDupResponses="true" immediate="false" inView="true" limitToList="false" maxPages="10" page="1" renderIfSinglePage="true" rendered="true" requestDelay="-2147483648" stepControls="show" styleClass="scroller" timeout="-2147483648" transient="false"/>
<HtmlSelectOneMenu disabled="false" id="rowsPerPage" immediate="false" inView="true" localValueSet="false" readonly="false" rendered="true" required="false" styleClass="rows-select" transient="false" valid="true" value="r25">
org.ajax4jsf.ajax.SUPPORTonchange
<HtmlAjaxSupport ajaxSingle="true" bypassUpdates="false" disableDefault="false" disabled="false" event="onchange" id="j_id47" ignoreDupResponses="false" immediate="false" inView="true" limitToList="false" rendered="true" requestDelay="-2147483648" timeout="-2147483648" transient="false"/>
<UISelectItems id="j_id48" inView="true" rendered="true" transient="false"/>
</HtmlSelectOneMenu>
<HtmlOutputLabel escape="true" for="rowsPerPage" id="j_id49" inView="true" rendered="true" styleClass="rows-label" transient="false" value="rows per page"/>
</div> <div class="clear"/>
<HtmlDataTable border="0" captionClass="" cellpadding="0" cellspacing="0" columns="-2147483648" componentState="org.ajax4jsf.component.SequenceDataAdaptor$1@44a3b539" first="0" footerClass="" headerClass="" id="results_table" inView="true" rendered="true" rowIndex="0" rowKeyVar="rowKey" rowStatePreserved="false" rows="25" styleClass="results-table" transient="false" var="row">
<HtmlColumn breakBefore="false" colspan="-2147483648" filterEvent="onchange" filterExpression="false" footerClass="" header="javax.faces.component.html.HtmlOutputText@1eb9d491" headerClass="" id="j_id51" inView="true" label="" rendered="true" rowspan="-2147483648" selfSorted="true" sortOrder="UNSORTED" sortable="true" styleClass="gene" transient="false" visible="true">
header
<HtmlOutputText escape="true" id="j_id52" inView="true" rendered="true" transient="false" value="Gene"/>
<div class="term"> <div class="l">Portal:</div> <a class="t" href="/#{row.portalId}">#{row.portalId}</a> </div> <div class="term"> <div class="l">Portal Name:</div> <div class="v">#{row.displayName}</div> </div> <div class="term"> <div class="l">Protein Id:</div> <a class="t" href="#{row.proteinUrl}">#{row.proteinId}</a> </div> <div class="term"> <div class="l">Transcript Id:</div> <a class="t" href="#{row.transcriptUrl}">#{row.transcriptId}</a> </div> <div class="term"> <div class="l">Location:</div> <a class="t" href="#{row.locationUrl}">#{row.location}</a> </div> <div class="term"> <div class="l">Model Name:</div> <div class="v">#{row.geneName}</div> </div> <div class="term"> <div class="l">Track:</div> <div class="v">#{row.geneTrack}</div> </div>
</HtmlColumn>
<HtmlColumn breakBefore="false" colspan="-2147483648" filterEvent="onchange" filterExpression="false" footerClass="" header="javax.faces.component.html.HtmlOutputText@643acb66" headerClass="" id="j_id54" inView="true" label="" rendered="true" rowspan="-2147483648" selfSorted="true" sortOrder="UNSORTED" sortable="true" styleClass="ontology" transient="false" visible="true">
header
<HtmlOutputText escape="true" id="j_id55" inView="true" rendered="true" transient="false" value="Gene Ontology"/>
<HtmlAjaxRepeat componentState="org.ajax4jsf.component.SequenceDataAdaptor$1@2a7dc105" first="0" id="j_id56" inView="true" rendered="true" rowIndex="0" rowStatePreserved="false" rows="0" transient="false" var="term">
<div class="term"> <a href="http://amigo.geneontology.org/amigo/term/#{term.goId}" class="t">#{term.goId}</a> <span class="n">#{term.goName}</span> </div>
</HtmlAjaxRepeat>
</HtmlColumn>
<HtmlColumn breakBefore="false" colspan="-2147483648" filterEvent="onchange" filterExpression="false" footerClass="" header="javax.faces.component.html.HtmlOutputText@182e4ed7" headerClass="" id="j_id58" inView="true" label="" rendered="true" rowspan="-2147483648" selfSorted="true" sortOrder="UNSORTED" sortable="true" styleClass="domains" transient="false" visible="true">
header
<HtmlOutputText escape="true" id="j_id59" inView="true" rendered="true" transient="false" value="Annotations"/>
<HtmlAjaxRepeat componentState="org.ajax4jsf.component.SequenceDataAdaptor$1@68b2b9ff" first="0" id="j_id60" inView="true" rendered="true" rowIndex="0" rowStatePreserved="false" rows="0" transient="false" var="term">
<HtmlOutputText escape="false" id="j_id61" inView="true" rendered="true" transient="false"/>
</HtmlAjaxRepeat>
</HtmlColumn>
<HtmlColumn breakBefore="false" colspan="-2147483648" filterEvent="onchange" filterExpression="false" footerClass="" header="javax.faces.component.html.HtmlOutputText@16800708" headerClass="" id="j_id62" inView="true" label="" rendered="true" rowspan="-2147483648" selfSorted="true" sortOrder="UNSORTED" sortable="true" styleClass="user_annotations" transient="false" visible="true">
header
<HtmlOutputText escape="true" id="j_id63" inView="true" rendered="true" transient="false" value="User Annotations"/>
<HtmlAjaxRepeat componentState="org.ajax4jsf.component.SequenceDataAdaptor$1@52b18934" first="0" id="j_id64" inView="true" rendered="true" rowIndex="0" rowStatePreserved="false" rows="0" transient="false" var="item">
<div class="term"> <span class="d">${item.name}:</span> <span class="t">${item.value}</span> <span class="d"> (<a href="mailto:#{item.userEmail}">${item.userName}</a>, #{item.dateFormatted}) </span> </div>
</HtmlAjaxRepeat>
</HtmlColumn>
</HtmlDataTable>
</HtmlAjaxOutputPanel>
<HtmlInputHidden id="organism" immediate="false" inView="true" localValueSet="false" rendered="true" required="false" transient="false" valid="true" value="Settur3"/>
<HtmlInputHidden id="sessionId" immediate="false" inView="true" localValueSet="false" rendered="true" required="false" transient="false" valid="true" value=""/>
</HtmlForm>
<div id="download_disclaimer"> <div class="disclaimer">
<HtmlOutputText escape="false" id="j_id67" inView="true" rendered="true" transient="false"/>
</div> <div class="checkbox"> <input type="checkbox" id="do_not_show"/>
<HtmlOutputText escape="true" id="j_id69" inView="true" rendered="true" transient="false" value="Do not show Data Usage Policy for "/>
<HtmlOutputText escape="true" id="j_id70" inView="true" rendered="true" style="font-weight:bold" transient="false" value="Setosphaeria turcica NY001 v2.0"/>
<HtmlOutputText escape="true" id="j_id71" inView="true" rendered="true" transient="false" value=" next time"/>
</div> </div> <div id="opened_session"/> </div>
<HtmlOutputText escape="false" id="j_id73" inView="true" rendered="true" transient="false" value="<!-- script for form in production--> <script type="text/javascript" src="https://issues.jgi-psf.org/s/d41d8cd98f00b204e9800998ecf8427e/en_US199fcz-1988229788/6144/83/1.4.0-m6/_/download/batch/com.atlassian.jira.collector.plugin.jira-issue-collector-plugin:issuecollector/com.atlassian.jira.collector.plugin.jira-issue-collector-plugin:issuecollector.js?collectorId=4c7588ab"></script> <script type="text/javascript" src="https://issues.jgi-psf.org/s/0638579675be36eb33553e191477fe46-T/en_USyqhetd/6346/86/1.4.16/_/download/batch/com.atlassian.jira.collector.plugin.jira-issue-collector-plugin:issuecollector/com.atlassian.jira.collector.plugin.jira-issue-collector-plugin:issuecollector.js?locale=en-US&collectorId=bf33317f"></script> <script type="text/javascript"> function IsEmail(email) { var regex = /^([a-zA-Z0-9_.+-])+\@(([a-zA-Z0-9-])+\.)+([a-zA-Z0-9]{2,4})+$/; return regex.test(email); } function emailCheck(e) { //var email=document.jic-collector-form.email.customfield_10556.value; var email = jQuery("#customfield_10556").val; if (!IsEmail(email)) { alert('Please input a valid email address!'); //.document.jic-collector-form.email.focus() //e.preventDefault(); return; } //var emailVerify = document.jic-collector-form.email.customfield_10903.value; var emailVerify = jQuery("#customfield_10903").val; if (email !== emailVerify) { alert('Email verification field must match email field. ' + email + ' !== ' + emailVerify); //e.preventDefault(); return; } } function InstallEmailValidationHandler() { // var v = jQuery("iframe#atlwdg-frame").contents().find("#customfield_10556"); // var frame = jQuery("iframe").contents(); var v1 = jQuery("#atlwdg-frame").contents().find("#customfield_10556"); var v2 = jQuery("#atlwdg-frame").contents().find("#customfield_10903"); v1.on('blur', emailCheck); v2.on('blur', emailCheck); } window.ATL_JQ_PAGE_PROPS = jQuery.extend(window.ATL_JQ_PAGE_PROPS, { '4c7588ab': { "triggerFunction": function(showCollectorDialog) { //Requires that jQuery is available! jQuery('.feedback').click(function(e) { e.preventDefault(); showCollectorDialog(); InstallEmailValidationHandler(); }); } }, 'bf33317f': { "triggerFunction": function(showCollectorDialog) { //Requires that jQuery is available! jQuery('.feature-feedback').click(function(e) { e.preventDefault(); showCollectorDialog(); InstallEmailValidationHandler(); }); } } }); </script> <!-- end of script --> <!-- script for form in testing FD --> <!-- <script type="text/javascript" src="https://issues.jgi-psf.org/s/0638579675be36eb33553e191477fe46-T/en_USyqhetd/6346/86/1.4.16/_/download/batch/com.atlassian.jira.collector.plugin.jira-issue-collector-plugin:issuecollector/com.atlassian.jira.collector.plugin.jira-issue-collector-plugin:issuecollector.js?locale=en-US&collectorId=bf33317f"></script> <script type="text/javascript">window.ATL_JQ_PAGE_PROPS = { "triggerFunction": function(showCollectorDialog) { //Requires that jQuery is available! jQuery(".feedback").click(function(e) { e.preventDefault(); showCollectorDialog(); }); }};</script> --> <!-- end of script --><div class="clear"></div> <div class="wrapper"> <div class="divider divider-tall"></div> <div id="footer"> <ul class="float_left"> <li><a target="_parent" href="#" class="textlink feedback">Contact Us</a></li> <li><a target="_parent" href="http://www.jgi.doe.gov/whoweare/disclaimer.html" class="textlink">Disclaimer</a></li> </ul> <ul class="float_left"> <li><a target="_parent" href="/pages/citeUs.jsf" class="textlink">Cite Us</a></li> <li><a target="_parent" href="/pages/credits.jsf" class="textlink">Credits</a></li> </ul> <ul class="float_left"> <!--<li><a target="_parent" href="https://www.surveymonkey.com/r/W7783SJ" class="textlink">Survey 2017</a></li> --> <li><a target="_parent" class="textlink" href="http://www.jgi.doe.gov/whoweare/accessibility.html">Accessibility/Section 508</a></li> </ul> <div class="float_right"> <span id="doelogo"><a href="http://science.energy.gov/" target="_parent"><img src="/images/DOE_logo.png" width="232" height="39" alt="DOE logo" border="0" /></a></span> </div> <div class="clear"></div> <ul> <li>© 1997-2019 The Regents of the University of California.</li> <li><span class="version">Mycocosm Portal version:11.12 jgi-myco-web-2.nersc.gov Release Date:23-Oct-2019 13:11:27 PST Current Date:23-Oct-2019 13:33:36.733 PDT</span> </li> </ul> </div> <div class="clear"></div> </div>"/>
</body> </html>
</AjaxViewRoot>

+ Scoped Variables

Request Parameters
NameValue
organismSettur3
Request Attributes
NameValue
ajaxContextorg.ajax4jsf.context.AjaxContextImpl@38033d43
duid
organismSettur3
organizedByFileType
response_time_clock_start1001764740313842
scriptName/pages/search-for-genes.jsf
serverNamehttps://mycocosm.jgi.doe.gov
Session Attributes
NameValue
None
Application Attributes
NameValue
csfcff[ ]
Oct 23, 2019, 1:33:36 PM - Generated by Facelets