Due to the emerging COVID-19 pandemic, JGI will not be accepting or processing any samples because of reduced onsite staffing until further notice.
Secondary Metabolism Clusters • Mycorrhizal Fungi

Within the framework of the JGI Mycorrhizal Genomics Initiative (MGI) project, we are sequencing a phylogenetically and ecologically diverse suite of mycorrhizal fungi (Basidiomycota and Ascomycota), which include the major clades of symbiotic species associating with trees and woody shrubs. Analyses of these genomes will provide new insights into the diversity of mechanisms for the mycorrhizal symbioses, including ericoid-, orchidoid- and ectomycorrhizal associations. A large collaborative effort led by PI of these project, Francis Martin (INRA), aims for master publication(s) of the MGI data analyses. Researchers who wish to publish analyses using data from unpublished MGI genomes are respectfully required to contact the PIs and JGI to avoid potential conflicts on data use and coordinate other publications with the MGI master paper(s).

Genomes Cluster Type Scale Clusters
Per Page

Total 52 cluster(s) found. 1 2
Cluster Id
Cluster Type
Scaffold
Size (bp)
Genes
Cluster IdCluster TypeScaffoldSize (bp)Genes
Altta1.19
DMAT
ALMCTG_1729:47-1312013,073
Altte1.21
DMAT
AT2CTG_90:17795-190031,208
Chagl1.9
DMAT
scaffold_3:1495-2786826,373
Colin1.4
DMAT
KV_841782:14908-161701,262
Colin1.19
DMAT
KV_842049:87408-10287415,466
Colin1.23
DMAT
KV_842085:111860-1164074,547
Colin1.29
DMAT
KV_841800:167328-20753840,210
Colin1.32
DMAT
KV_841747:194707-1960891,382
Colin1.59
DMAT
KV_841997:90680-920511,371
Colin1.60
DMAT
KV_841761:688510-6899581,448
Collup1.4
DMAT
CP_019481:3959379-39607651,386
Collup1.15
DMAT
CP_019476:5508511-55099301,419
Collup1.17
DMAT
CP_019476:5705411-57068731,462
Collup1.18
DMAT
CP_019476:6364489-637646611,977
Collup1.42
DMAT
CP_019471:1771812-178457412,762
Collup1.54
DMAT
CP_019478:3893203-390785514,652
Colme1.3
DMAT
Scaffold_22:283544-31499531,451
Colme1.7
DMAT
Scaffold_14:1267740-128084713,107
Colme1.38
DMAT
Scaffold_7:2197851-221594918,098
Colme1.46
DMAT
Scaffold_9:1046991-107207025,079
Colme1.47
DMAT
Scaffold_9:1646794-16482561,462
Fuseq1.30
DMAT
scaffold_5:3952206-398020327,997
FusoxFo47.8
DMAT
supercont1_13:621394-63678115,387
FusoxFo47.11
DMAT
supercont1_12:54548-560841,536
FusoxFo47.28
DMAT
supercont1_2:2250708-22520451,337
FusoxFo47.49
DMAT
supercont1_8:2063883-208194018,057
Hyafin1.6
DMAT
scaffold_85:17962-3106313,101
Hymrad1.5
DMAT
scaffold_26:151983-16909017,107
Hymrad1.20
DMAT
scaffold_90:142978-16176618,788
Hymrad1.24
DMAT
scaffold_465:21205-262335,028
Morper1.4
DMAT
scaffold_12:1792012-180893516,923
Mycrub1.5
DMAT
scaffold_46:272713-2758533,140
Mycrub1.6
DMAT
scaffold_44:514909-5174952,586
Mycrub1.13
DMAT
scaffold_3:486660-4921155,455
Mycrub1.16
DMAT
scaffold_2:2514481-25237939,312
Mycrub1.46
DMAT
scaffold_22:1611437-16126081,171
Penant1.24
DMAT
scaffold_6:791407-80383612,429
Penant1.39
DMAT
scaffold_54:43826-8360039,774
Podan2.1
DMAT
chromosome_5:253084-2544171,333
Podan2.3
DMAT
chromosome_5:399878-41896519,087
Podan2.14
DMAT
chromosome_4:392075-3945742,499
Pursp1.4
DMAT
scaffold_27:9921-116721,751
Rhyru1_1.59
DMAT
Scaffold_269:14642-186063,964
Ricme1.17
DMAT
scaffold_143:46885-490252,140
Rorror1.40
DMAT
scaffold_12:406272-43069324,421
Roster1.18
DMAT
scaffold_5:688265-69938011,115
Roster1.38
DMAT
scaffold_152:46713-479831,270
Schco2071_1.8
DMAT
scaffold_8:485793-4873061,513
Stano2.11
DMAT
scaffold_13:136530-1376011,071
Stano2.29
DMAT
scaffold_9:1306567-132172115,154