Phycocosm Portals

202	Name	Assembly Length	# of Genes	Publication
1	Gracilaria gracilis GNS1m	76,009,156	8,693	Lipinska AP et al., 2023
2	Gracilaria vermiculophylla HapMaleFtJ-2017	45,957,138	6,327	Lipinska AP et al., 2023
3	Sargassum fusiforme	394,427,661	17,495	Wang S et al., 2020
4	Chlorella sorokiniana DOE1412	57,881,618	10,257	Hovde Blake T. et al., 2018
5	Chlorella sorokiniana UTEX 1602	59,371,605	9,245	Arriola MB et al., 2018
6	Chlorella sorokiniana UTEX 1230	58,534,920	12,209	Hovde Blake T. et al., 2018
7	Chlorella sorokiniana strain 1228	61,391,260	11,701	Hovde Blake T. et al., 2018
8	Micractinium conductrix SAG 241.80	60,773,875	8,739	Arriola MB et al., 2018
9	Auxenochlorella protothecoides UTEX 25	21,217,637	5,688	Vogler Brian W. et al., 2018
10	Nannochloropsis oceanica CCAP849/10	29,986,049	10,044
11	Seminavis robusta D6	125,572,603	33,143	Osuna-Cruz CM et al., 2020
12	Chlamydomonas eustigma NIES-2499	66,605,202	13,365	Hirooka S et al., 2017
13	Trebouxiophyceae sp. bin 3300059473_978 v1.0	16,200,188	7,783
14	Trebouxiophyceae sp. bin 3300059473_6682 v1.0	18,077,445	8,628
15	Chlorellaceae sp. bin 3300059473_4402 v1.0	14,333,578	8,227
16	Chlorellaceae sp. bin 3300059473_4966 v1.0	14,819,488	8,098
17	Amoebophrya ceratii AT5.2	87,690,817	18,158	John U et al., 2019
18	Undaria pinnatifida M23	511,280,173	12,499	Shan T et al., 2020
19	Neopyropia yezoensis U-51	43,483,963	8,598	Nakamura Y et al., 2013
20	Prasinoderma coloniale CCMP1413	25,323,194	6,927	Li L et al., 2020
21	Fistulifera solaris JPCC DA0580	49,736,633	14,395	Tanaka T et al., 2015
22	Proteomonas sulcata CCMP 1175 v1.1	270,343,095	34,130
23	Chloromonas remiasii CCCryo 005-99 v1.0	493,134,015	38,828
24	Polarella glacialis CCMP2088	2,147,483,647	34,066	Stephens TG et al., 2020
25	Polarella glacialis CCMP1383	2,147,483,647	37,736	Stephens TG et al., 2020
26	Paulinella micropora KR01	707,124,085	15,326	Lhee D et al., 2021
27	Cyclotella cryptica CCMP332 v2.0	171,139,483	14,429	Traller JC et al., 2016
28	Chlorokybus atmophyticus CCAC 0220	74,335,726	8,693	Wang S et al., 2020
29	Mesostigma viride NIES-296	441,698,809	16,232	Liang Z et al., 2020
30	Mesotaenium endlicherianum SAG12.97	173,768,482	10,300	Cheng S et al., 2019
31	Gracilaria domingensis SP 400837	77,739,776	9,746	Nakamura-Gouvea N et al., 2022
32	Raphidocelis subcapitata NIES-35	51,162,697	13,088	Suzuki S et al., 2018
33	Botryococcus braunii Showa	170,200,492	13,943	Browne DR et al., 2017
34	Mesostigma viride CCAC 1140	281,412,241	8,789	Wang S et al., 2020
35	Spirogloea muscicola CCAC 0214	171,136,975	24,093	Cheng S et al., 2019
36	Klebsormidium nitens NIES-2285 v1.1	103,921,766	15,568	Hori K et al., 2014
37	Astrephomene gubernaculifera NIES-4017	103,829,650	13,067	Yamashita S et al., 2021
38	Chlamydomonas reinhardtii CC-4532 v6.1	114,035,500	16,090	Craig RJ et al., 2023
39	Mayamaea pseudoterrestris NIES-4280	30,627,229	10,680	Suzuki S et al., 2022
40	Fragilaria crotonensis SAG 28.96	61,849,504	18,721	Zepernick BN et al., 2022
41	Chaetoceros tenuissimus NIES-3715	41,001,288	17,253	Hongo Y et al., 2021
42	Ostreobium quekettii SAG 6.99	151,902,089	9,649	Iha Cintia et al., 2021
43	Nitzschia putrida NIES-4239	34,998,307	13,794	Kamikawa R et al., 2022
44	Nannochloropsis gaditana CCMP1894	30,865,741	8,928	Schwartz AS et al., 2018
45	Alaria esculenta A1	487,803,962	18,078	Bringloe TT et al., 2022
46	Nannochloris desiccata UTEX 2526	21,550,525	8,818	Sanders CK et al., 2022
47	Helicosporidium sp. ATCC 50920	12,373,820	5,602	Pombert JF et al., 2014
48	Nannochloris desiccata UTEX 2437	20,738,005	7,973	Sanders CK et al., 2022
49	Monodopsis strain C73	59,696,957	12,958	Yang HP et al., 2021
50	Monodopsis strain C141	60,466,283	12,961	Yang HP et al., 2021
51	Vischeria strain C74	106,485,303	15,625	Yang HP et al., 2021
52	Macrocystis pyrifera CI_03 v1.0	537,452,659	25,919	Diesel J et al., 2023
53	Pedinomonas minor SAG 1965-3	54,966,539	10,504	Xu Y et al., 2022
54	Pedinophyceae sp. YPF-701	27,899,919	7,759	Repetti SI et al., 2022
55	Zygnema cf. cylindricum SAG 698-1a	359,785,760	14,200	Feng Xuehuan et al., 2023
56	Zygnema circumcarinatum UTEX 1559	71,310,527	12,038	Feng Xuehuan et al., 2023
57	Zygnema circumcarinatum UTEX 1560	67,280,745	12,436	Feng Xuehuan et al., 2023
58	Scenedesmus obliquus UTEX 3031	205,013,584	13,349	Biondi Thomas C. et al., 2024
59	Coccomyxa subellipsoidea C-169 v3.0	48,852,666	10,893	Blanc G et al., 2012
60	Porphyridium purpureum CCMP1328	22,192,338	8,278	Bhattacharya D et al., 2013
61	Microglena sp. YARC	572,689,865	19,590	Ye N et al., 2022
62	Micromonas sp. AD1 metagenome extracted assembly	21,112,593	11,269	Duncan A et al., 2022
63	Mesotaenium kramstae Lemmermann NIES-657 v3.0	331,691,281	15,982
64	Scenedesmus obliquus UTEX 393 v2.0	107,859,680	19,017
65	Cafeteria roenbergensis BVI	36,283,887	8,555	Hackl T et al., 2020
66	Chlamydomonas priscuii UWO241	211,641,456	14,754	Stahl-Rommel S et al., 2022
67	Monoraphidium minutum 26B-AM v1.0	68,170,630	15,337	Calhoun Sara et al., 2022
68	Tetradesmus deserticola SNI-2 v1.1	198,160,740	17,197
69	Flechtneria rotunda SEV3VF49 v1.1	76,784,650	16,599
70	Tetradesmus obliquus UTEX 72 v1.1	107,156,682	16,985
71	Enallax costatus CCAP 276/31 v1.1	127,564,975	19,308
72	Hyphochytrium catenoides ATCC 18719	68,540,538	18,481	Leonard G et al., 2018
73	Desmodesmus armatus UTEX B 2533 v2.0	122,633,162	15,634
74	Chromera velia CCMP2878	193,889,730	24,133	Woo YH et al., 2015
75	Labyrinthula sp. SR_Ha_C	50,948,119	8,488	Tan MH et al., 2021
76	Hondaea fermentalgiana CCAP_4062/3	38,943,350	11,853	Seddiki K et al., 2018
77	Nitzschia inconspicua GAI-293 v2.0	99,706,970	17,968	Oliver A et al., 2021
78	Tribonema minus UTEX B 3156 v1.0	158,345,074	18,290	Mahan KM et al., 2021
79	Hyaloperonospora arabidopsidis Emoy2 v2.0	78,897,814	9,138	Baxter L et al., 2010
80	Scenedesmus obliquus var. DOE0013 v1.0	102,771,905	15,938
81	Scenedesmus obliquus var. UTEX 1450 v1.0	104,043,312	16,565
82	Scenedesmus obliquus var. UTEX2630 v1.0	106,020,692	16,604
83	Fugacium kawagutii CCMP2468	1,048,482,934	26,609	Lin S et al., 2015
84	Cladocopium goreaui SCF055-01	1,027,792,016	35,913	Liu H et al., 2018
85	Breviolum minutum	609,476,485	47,014	Shoguchi E et al., 2013
86	Nannochloropsis salina CCMP1776	27,757,252	8,927	Ohan JA et al., 2019
87	Nemacystus decipiens Onna-1	153,973,811	17,099	Nishitsuji K et al., 2019
88	Chlamydomonas schloesseri CCAP 11/173	130,201,002	16,268	Craig RJ et al., 2021
89	Picocystis sp. ML	29,463,432	5,613	Junkins EN et al., 2019
90	Chlamydomonas incerta SAG 7.73	129,236,421	16,957	Craig RJ et al., 2021
91	Edaphochlamys debaryana CCAP 11/70	142,143,002	20,450	Craig RJ et al., 2021
92	Cladosiphon okamuranus S strain	169,730,755	14,750	Nishitsuji K et al., 2016
93	Galdieria sulphuraria Azora	14,055,766	6,305	Rossoni AW et al., 2019
94	Galdieria sulphuraria MtSh	14,998,623	6,160	Rossoni AW et al., 2019
95	Cyanidioschyzon merolae Soos	12,336,830	4,406	Rossoni AW et al., 2019
96	Galdieria phlegrea Soos	14,871,243	6,125	Rossoni AW et al., 2019
97	Galdieria sulphuraria SAG 21.92	14,317,600	5,956	Rossoni AW et al., 2019
98	Galdieria sulphuraria MS1	14,906,717	7,441	Rossoni AW et al., 2019
99	Galdieria sulphuraria YNP5578.1	14,439,647	6,118	Rossoni AW et al., 2019
100	Galdieria sulphuraria 5572	14,288,869	6,472	Rossoni AW et al., 2019
101	Galdieria sulphuraria 002	14,106,382	5,912	Rossoni AW et al., 2019
102	Galdieria sulphuraria RT22	15,626,563	6,982	Rossoni AW et al., 2019
103	Chlorella sorokiniana str. 1228	61,391,260	12,169	Hovde Blake T. et al., 2018
104	Chlorella sorokiniana UTEX 1602	59,371,605	10,384	Arriola MB et al., 2018
105	Trebouxia sp. A1-2	52,896,788	13,918	Greshake Tzovaras B et al., 2020
106	Picochlorum renovo	14,391,424	9,010	Dahlin LR et al., 2019
107	Auxenochlorella protothecoides UTEX 25	21,217,637	6,041	Vogler Brian W. et al., 2018
108	Chlorella sorokiniana DOE1412	57,881,618	12,611	Hovde Blake T. et al., 2018
109	Picochlorum soloecismus DOE101	15,252,578	6,861	Gonzalez-Esquer CR et al., 2018
110	Chlorella sp. A99	40,934,037	8,298	Hamada M et al., 2018
111	Tetrabaena socialis NIES-571	135,779,852	14,296	Featherston J et al., 2018
112	Chlorella sorokiniana UTEX 1230	58,534,920	12,871	Hovde Blake T. et al., 2018
113	Cyanophora paradoxa CCMP329	98,351,904	25,518	Price DC et al., 2019
114	Tetraselmis striata	232,085,675	46,696	Steadman Tyler CR et al., 2019
115	Chara braunii S276	1,750,992,823	35,672	Nishiyama T et al., 2018
116	Micractinium conductrix SAG 241.80	60,773,875	10,070	Arriola MB et al., 2018
117	Vitrella brassicaformis CCMP3155	72,700,666	21,239	Woo YH et al., 2015
118	Ochromonas sp. CCMP1393 v1.4	56,491,843	19,714
119	Paraphysomonas imperforata CCMP1604 v1.4	67,191,102	17,134
120	Minidiscus variabilis CCMP495 v1.0	76,188,022	25,179
121	Scenedesmus sp. NREL 46B-D3 v1.0	151,896,789	17,399	Calhoun S et al., 2021
122	Chloropicon primus CCMP1205	17,400,691	8,327	Lemieux C et al., 2019
123	Caulerpa lentillifera	28,654,260	8,818	Arimoto A et al., 2019
124	Chlamydomonas reinhardtii CC-503 v5.6	111,100,715	16,403	Merchant SS et al., 2007
125	Volvox carteri v2.1	131,163,211	13,076	Prochnik SE et al., 2010
126	Scenedesmus obliquus EN0004 v1.0	100,077,845	15,053
127	Reticulomyxa filosa	101,867,045	39,963	Glöckner G et al., 2014
128	Tetrahymena thermophila SB210	103,014,375	26,994	Eisen JA et al., 2006
129	Plasmodium falciparum 3D7	23,326,872	5,392	Gardner MJ et al., 2002
130	Toxoplasma gondii ME49	65,668,120	8,318	Kissinger JC et al., 2003
131	Oxytricha trifallax JRB310	67,158,112	24,578	Swart EC et al., 2013
132	Paramecium tetraurelia d4_2	72,094,543	39,580	Aury JM et al., 2006
133	Trichomonas vaginalis G3	176,420,065	59,679	Carlton JM et al., 2007
134	Trypanosoma brucei brucei TREU927	26,075,494	8,787	Berriman M et al., 2005
135	Giardia intestinalis ATCC 50803	11,213,615	6,502	Morrison HG et al., 2007
136	Phaeocystis antarctica CCMP1374 v2.2	198,936,094	37,754
137	Phaeocystis globosa Pg-G v2.3	155,849,266	30,220
138	Chromochloris zofingiensis SAG 211-14 v5.0	60,130,699	15,274	Roth MS et al., 2017
139	Chondrus crispus Stackhouse	104,980,420	9,808	Collén J et al., 2013
140	Cyanidioschyzon merolae strain 10D	16,546,747	4,803	Nozaki H et al., 2007
141	Galdieria sulphuraria 074W	13,712,004	7,174	Schönknecht G et al., 2013
142	Symbiodinium microadriaticum CCMP2467	808,226,712	43,403	Aranda M et al., 2016
143	Chrysochromulina tobin CCMP291	59,073,094	16,770	Hovde BT et al., 2015
144	Nannochloropsis oceanica CCMP1779 v2.0	36,454,932	10,641
145	Symbiochloris reticulata Scotland extracted metagenome v1.0	59,360,525	12,315
146	Symbiochloris reticulata Switzerland extracted metagenome v1.0	59,348,134	12,701
147	Symbiochloris reticulata Spain extracted metagenome v1.0	56,841,181	12,144
148	Symbiochloris reticulata Africa extracted metagenome v1.0	58,569,719	12,720
149	Porphyra umbilicalis isolate 4086291	87,888,981	13,567	Brawley SH et al., 2017
150	Nannochloropsis gaditana B-31	27,589,342	10,929	Corteggiani Carpinelli E et al., 2014
151	Blastocystis hominis Singapore isolate B (sub-type 7)	18,817,245	6,020	Denoeud F et al., 2011
152	Saprolegnia parasitica CBS 223.65	53,093,248	20,113	Jiang RH et al., 2013
153	Ectocarpus siliculosus Ec 32	195,810,619	16,271	Cock JM et al., 2010
154	Phytophthora infestans T30-4	228,543,505	17,797	Haas BJ et al., 2009
155	Thalassiosira oceanica CCMP1005	92,185,637	34,642	Lommer M et al., 2012
156	Auxenochlorella protothecoides 0710	22,924,637	7,013	Gao C et al., 2014
157	Sorghum bicolor	738,540,932	35,899	Paterson AH et al., 2009
158	Ostreococcus tauri RCC4221 v3.0	12,916,858	7,669	Blanc-Mathieu R et al., 2014
159	Ostreococcus tauri RCC1115 v1.0	14,904,543	8,218	Blanc-Mathieu R et al., 2017
160	Cryptophyceae sp. CCMP2293 v1.0	534,466,773	33,051	Dorrell RG et al., 2023
161	Pavlovales sp. CCMP2436 v1.0	165,407,586	26,034	Dorrell RG et al., 2023
162	Pelagophyceae sp. CCMP2097 v1.0	85,824,453	19,402	Dorrell RG et al., 2023
163	Ochromonadaceae sp. CCMP2298 v1.0	61,140,752	20,195	Dorrell RG et al., 2023
164	Symbiochloris reticulata Spain reference genome v1.0	58,316,282	12,582
165	Micromonas commoda NOUM17 (RCC 299)	20,989,326	10,262	Worden AZ et al., 2009
166	Micromonas pusilla CCMP1545	21,945,545	9,829	Worden AZ et al., 2009
167	Asterochloris glomerata Cgr/DA1pho v2.0	55,816,160	10,025	Armaleo D et al., 2019
168	Emiliania huxleyi CCMP1516 v1.0	167,727,055	33,341	Read BA et al., 2013
169	Naegleria gruberi v1.0	40,964,085	15,763	Fritz-Laylin LK et al., 2010
170	Phytophthora sojae v3.0	82,601,618	26,584	Tyler BM et al., 2006
171	Phytophthora ramorum v1.1	66,652,401	15,743	Tyler BM et al., 2006
172	Aureococcus anophagefferens clone 1984 v1.0	56,660,578	11,501	Gobler CJ et al., 2011
173	Phaeodactylum tricornutum	1,311,968	377	Bowler C et al., 2008
174	Chlorella variabilis NC64A v1.0	46,159,515	9,791	Blanc G et al., 2010
175	Selaginella moellendorffii v1.0		22,285	Banks JA et al., 2011
176	Ostreococcus sp. RCC809	13,296,292	3,174
177	Ostreococcus lucimarinus	13,204,888		Palenik B et al., 2007
178	Physcomitrium patens v1.1	479,985,347	35,938	Rensing SA et al., 2008
179	Arabidopsis lyrata	206,667,935		Hu TT et al., 2011
180	Schizochytrium aggregatum ATCC 28209 v1.0	40,854,260	10,612
181	Aplanochytrium kerguelense PBS07 v1.0	35,774,161	11,892
182	Aurantiochytrium limacinum ATCC MYA-1381 v1.0	60,926,267	14,859
183	Phytophthora cinnamomi var cinnamomi v1.0	77,967,402	26,131
184	Pseudo-nitzschia multiseries CLN-47	218,730,801	19,703
185	Bigelowiella natans CCMP2755 v1.0	94,701,163	21,708	Curtis BA et al., 2012
186	Guillardia theta CCMP2712 v1.0	87,159,915	24,840	Curtis BA et al., 2012
187	Phytophthora capsici LT1534 v11.0	64,023,748	19,805	Lamour KH et al., 2012
188	Fragilariopsis cylindrus CCMP 1102	80,540,407	21,066	Mock T et al., 2017
189	Thalassiosira pseudonana CCMP 1335	1,135,583	386	Bowler C et al., 2008
190	Phaeodactylum tricornutum CCAP 1055/1 v2.0	26,138,756	10,025	Bowler C et al., 2008
191	Thalassiosira pseudonana CCMP 1335 v3.0	31,301,782	11,390	Armbrust EV et al., 2004
192	Chrysochromulina parva Lackey	65,764,750	24,838	Hovde Blake T. et al., 2019
193	Diacronema lutheri NIVA-4/92	43,502,671	13,777	Hulatt CJ et al., 2021
194	Saccharina japonica str. Ja	548,536,073	18,732	Ye N et al., 2015
195	Gracilariopsis chorda SKKU-2015	92,180,038	8,855	Lee J et al., 2018
196	Gonium pectorale NIES-2863	148,806,073	16,290	Hanschen ER et al., 2016
197	Monoraphidium neglectum SAG 48.87	69,711,829	16,755	Bogen C et al., 2013
198	Zygnema circumcarinatum SAG 698-1b	70,999,792	10,678	Feng Xuehuan et al., 2023
199	Bathycoccus prasinos RCC1105	15,074,320	7,900	Moreau H et al., 2012
200	Ulva mutabilis Foyn	98,484,689	11,066	De Clerck O et al., 2018
201	Dunaliella salina CCAP19/18	343,704,392	18,801	Polle Juergen E. W. et al., 2017
202	Populus trichocarpa v1.1	485,510,911	45,555	Tuskan GA et al., 2006