Info • Aaosphaeria arxii CBS 175.79 v1.0


[May 2014] The Aaosphaeria arxii genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R47710 (Gnerre et al., 2010).
Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Aaosphaeria arxii CBS 175.79 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 38.90
Sequencing read coverage depth 86.5x
# of contigs 176
# of scaffolds 55
# of scaffolds >= 2Kbp 45
Scaffold N50 4
Scaffold L50 (Mbp) 4.42
# of gaps 121
% of scaffold length in gaps 0.3%
Three largest Scaffolds (Mbp) 5.68, 5.13, 4.68

ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator assembled Illumina ESTs 31600 31027 98.2%

Gene Models FilteredModels1
length (bp) of: average median
gene 1735 1529
transcript 1590 1392
exon 575 370
intron 85 59
protein length (aa) 450 379
exons per gene 2.76 2
# of gene models 14203


Joseph Spatafora, Oregon State University, USA
Pedro Crous and Manfred Binder at CBS-KNAW, The Netherlands.

Genome Reference(s)


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.