Info • Acaromyces ingoldii MCA 4198 v1.0


[March 2015] The Acaromyces ingoldii MCA 4198 genome was sequenced using the Illumina platform and assembled together with AllPathsLG version R49403, (Gnerre et al., 2010). Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Acaromyces ingoldii MCA 4198 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 19.33
Sequencing read coverage depth 91.4x
# of contigs 50
# of scaffolds 28
# of scaffolds >= 2Kbp 24
Scaffold N50 3
Scaffold L50 (Mbp) 3.16
# of gaps 22
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 4.52, 3.75, 3.16

ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator_assembled_Illumina_ESTs 16036 15841 98.8%

Gene Models FilteredModels1
length (bp) of: average median
gene 1942 1657
transcript 1784 1483
exon 589 325
intron 80 68
protein length (aa) 526 423
exons per gene 3.03 3
# of gene models 8025


Dr. Catherine Aime, Purdue University, IN

Dr. Joseph Spatafora, Oregon State University, USA

Genome Reference(s)


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.