Info • Acephala macrosclerotiorum EW76-UTF0540 v1.0

Status

Assembly v1 (January 2015) is a minimal draft assembly, using Illumina gDNAs assembled successively with Velvet and AllPathsLG.

Summary statistics for the Acephala macrosclerotiorum EW76-UTF0540 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 73.68
Sequencing read coverage depth 141.3x
# of contigs 1901
# of scaffolds 1695
# of scaffolds >= 2Kbp 1305
Scaffold N50 110
Scaffold L50 (Mbp) 0.17
# of gaps 206
% of scaffold length in gaps 0.2%
Three largest Scaffolds (Mbp) 1.31, 0.92, 0.88


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 38903 38551 99.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1599 1376
transcript 1423 1197
exon 470 296
intron 89 57
description:
protein length (aa) 407 328
exons per gene 3.03 3
# of gene models 21024


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.