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Info • Acidothrix acidophila CBS 136259 v1.0

Status

(Mar 2016) The Acidothrix acidophila CBS 136259 genome was sequenced using Illumina, assembled with AllPathsLG release version R49403, and annotated with the JGI annotation pipeline.

Summary statistics for the Acidothrix acidophila CBS 136259 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 37.77
Sequencing read coverage depth 143.7x
# of contigs 798
# of scaffolds 713
# of scaffolds >= 2Kbp 670
Scaffold N50 112
Scaffold L50 (Mbp) 0.10
# of gaps 85
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 0.70, 0.48, 0.42


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 42843 40979 95.6%
Ests est.fasta 329318423 325279133 98.8%


Gene Models FilteredModels2
length (bp) of: average median
gene 1725 1487
transcript 1523 1288
exon 530 315
intron 110 85
description:
protein length (aa) 450 369
exons per gene 2.87 2
# of gene models 11057


Collaborators

Milan Gryndler, Academy of Sciences of the Czech Republic

Joseph W. Spatafora, Oregon State University

Links

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.