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Info • Acremonium alcalophilum v2.0

Status

v2.0 (June 2011): This Acremonium alcalophilum finished genome sequence assembly v2.0 was improved over the v1.0 assembly using primer walking and manual checking using phred/phrap/consed. all detectable errors and misassemblies have been corrected where possible. The nuclear genome sequence from this draft assembly was annotated using the JGI Genome Annotation Pipeline and custom analyses. Multiple ESTs sequencing technologies and EST cluster data sets were tested for gene modeling with this genome; the combined 454 and Illumina EST Clusters ("cap3_all",  in the table below) was found best and used in gene modeling.

Summary statistics for the Acremonium alcalophilum v2.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 54.42
Sequencing read coverage depth Finished
# of contigs 286
# of scaffolds 13
# of scaffolds >= 2Kbp 13
Scaffold N50 3
Scaffold L50 (Mbp) 7.20
# of gaps 273
% of scaffold length in gaps 0.2%
Three largest Scaffolds (Mbp) 11.07, 9.10, 7.20


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters Acral1_EstClusters_cap3_all.fa 16004 12079 75.5%


Gene Models FilteredModels3_1
length (bp) of: average median
gene 1958 1581
transcript 1584 1333
exon 424 164
intron 139 70
description:
protein length (aa) 456 370
exons per gene 3.74 3
# of gene models 9521


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.