Info • Emericellopsis sp. TS7 v1.0

Status

[May 2019] The Acremonium sp. TS7 genome was sequenced with Illumina, assembled with SPAdes v3.12.0, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Acremonium sp. TS7 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 27.30
Sequencing read coverage depth 225.609923933x
# of contigs 136
# of scaffolds 114
# of scaffolds >= 2Kbp 105
Scaffold N50 14
Scaffold L50 (Mbp) 0.76
# of gaps 22
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.47, 1.29, 1.25


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 31863 31004 97.3%
Ests est.fasta 167154632 165855482 99.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1832 1593
transcript 1718 1496
exon 662 400
intron 74 57
description:
protein length (aa) 490 409
exons per gene 2.59 2
# of gene models 9964


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Hagestad OC, Hou L, Andersen JH, Hansen EH, Altermark B, Li C, Kuhnert E, Cox RJ, Crous PW, Spatafora JW, Lail K, Amirebrahimi M, Lipzen A, Pangilinan J, Andreopoulos W, Hayes RD, Ng V, Grigoriev IV, Jackson SA, Sutton TDS, Dobson ADW, Rämä T
Genomic characterization of three marine fungi, including Emericellopsis atlantica sp. nov. with signatures of a generalist lifestyle and marine biomass degradation.
IMA Fungus. 2021 Aug 9;12(1):21. doi: 10.1186/s43008-021-00072-0

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.