Info • Acrocalymma medigans LGMF1605 v1.0

Status

[September 2023] The Acrocalymma medigans LGMF1605 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 49.30
Sequencing read coverage depth 137.69x
# of contigs 19
# of scaffolds 19
# of scaffolds >= 2Kbp 18
Scaffold N50 6
Scaffold L50 (Mbp) 3.27
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 5.33, 5.24, 4.60


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 42414 34020 80.2%
Ests est.fasta 127055136 121330617 95.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1838 1559
transcript 1642 1407
exon 535 330
intron 97 60
description:
protein length (aa) 495 408
exons per gene 3.07 3
# of gene models 16073


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.