Info • Agrocybe praecox OKM6292 v1.0


[July 2018] The Agrocybe praecox OKM6292 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Agrocybe praecox OKM6292 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 46.41
Sequencing read coverage depth 93.06x
# of contigs 508
# of scaffolds 508
# of scaffolds >= 2Kbp 492
Scaffold N50 32
Scaffold L50 (Mbp) 0.35
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.43, 1.77, 1.73

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 70292 63840 90.8%
Ests est.fasta 183862433 179812909 97.8%

Gene Models FilteredModels1
length (bp) of: average median
gene 1865 1619
transcript 1516 1302
exon 243 149
intron 69 58
protein length (aa) 440 361
exons per gene 6.24 5
# of gene models 12993


Jon Magnuson, Pacific Northwest National Laboratory

Joseph W. Spatafora, Oregon State University


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.