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Info • Alternaria alternata ATCC11680

Status

The genome sequence and gene prediction of Alternaria alternata ATCC11680 have not been determined by the Joint Genome Institute (JGI), but were provided by Christopher Lawrence and Ha X. Dang in Aug 2019 (Alternaria Genomes Database - AGD). In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. We have removed small scaffolds (<1kb) without gene models, and it thus differs from the original data present in the AGD. Please note that this copy of the genome is not maintained by the original authors and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.

Summary statistics for the Alternaria alternata ATCC11680 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 33.57
Sequencing read coverage depth 1x
# of contigs 364
# of scaffolds 364
# of scaffolds >= 2Kbp 192
Scaffold N50 25
Scaffold L50 (Mbp) 0.45
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.74, 1.22, 0.87


Gene Models ExternalModels
length (bp) of: average median
gene 1596 1353
transcript 1470 1242
exon 566 332
intron 80 56
description:
protein length (aa) 490 414
exons per gene 2.60 2
# of gene models 12323


Collaborators

Christopher B. Lawrence, Virgina Tech, USA

Funding

This project was not sequenced at the JGI.