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Info • Alternaria brassicicola ATCC96836

Status

The genome sequence and gene prediction of Alternaria brassicicola ATCC96836 have not been determined by the Joint Genome Institute (JGI), but were provided by Christopher Lawrence and Ha X. Dang in Aug 2019 (Alternaria Genomes Database - AGD). In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. We have removed small scaffolds (<1kb) without gene models, and it thus differs from the original data present in the AGD. Please note that this copy of the genome is not maintained by the original authors and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.

Summary statistics for the Alternaria brassicicola ATCC96836 release are below.
Genome Assembly
Genome Assembly size (Mbp) 31.75
Sequencing read coverage depth
# of contigs 2036
# of scaffolds 565
# of scaffolds >= 2Kbp 124
Scaffold N50 5
Scaffold L50 (Mbp) 2.52
# of gaps 1471
% of scaffold length in gaps 5.2%
Three largest Scaffolds (Mbp) 4.17, 3.94, 2.68


Gene Models ExternalModels
length (bp) of: average median
gene 1544 1254
transcript 1354 1097
exon 503 284
intron 115 60
description:
protein length (aa) 451 365
exons per gene 2.69 2
# of gene models 10514


Collaborators

Christopher B. Lawrence, Virgina Tech, USA

Funding

This project was not sequenced at the JGI.