Info • Allomyces macrogynus ATCC 38327

Status

This genome was sequenced by the Broad Institute. Please check their data use policies.

Summary statistics for the Allomyces macrogynus ATCC 38327 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 57.06
Sequencing read coverage depth 11.39x
# of contigs 8973
# of scaffolds 101
# of scaffolds >= 2Kbp 101
Scaffold N50 17
Scaffold L50 (Mbp) 1.11
# of gaps 8872
% of scaffold length in gaps 7.8%
Three largest Scaffolds (Mbp) 3.15, 2.43, 2.14


Gene Models BroadModels
length (bp) of: average median
gene 1957 1678
transcript 1698 1434
exon 492 285
intron 107 77
description:
protein length (aa) 484 389
exons per gene 3.46 3
# of gene models 19446


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Amses KR, Simmons DR, Longcore JE, Mondo SJ, Seto K, Jerônimo GH, Bonds AE, Quandt CA, Davis WJ, Chang Y, Federici BA, Kuo A, LaButti K, Pangilinan J, Andreopoulos W, Tritt A, Riley R, Hundley H, Johnson J, Lipzen A, Barry K, Lang BF, Cuomo CA, Buchler NE, Grigoriev IV, Spatafora JW, Stajich JE, James TY
Diploid-dominant life cycles characterize the early evolution of Fungi.
Proc Natl Acad Sci U S A. 2022 Sep 6;119(36):e2116841119. doi: 10.1073/pnas.2116841119

Funding

This project was not sequenced at the JGI.