Info • Alternaria alternata SRC1lrK2f v1.0

Status

[Dec 2014] The Alternaria alternata genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R46652 (Gnerre et al., 2010).
Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Alternaria alternata SRC1lrK2f v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 32.99
Sequencing read coverage depth 147.1x
# of contigs 86
# of scaffolds 79
# of scaffolds >= 2Kbp 66
Scaffold N50 12
Scaffold L50 (Mbp) 1.10
# of gaps 7
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.53, 1.80, 1.73


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator assembled Illumina ESTs 29121 28815 98.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1727 1498
transcript 1606 1389
exon 616 399
intron 77 56
description:
protein length (aa) 458 383
exons per gene 2.61 2
# of gene models 13469


Collaborators

Colleen Hansel at the Woods Hole Oceanographic Institution.

Cara M. Santelli at the Smithsonian Institution, Washington, DC.

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Zeiner CA, Purvine SO, Zink EM, Paša-Tolić L, Chaput DL, Haridas S, Wu S, LaButti K, Grigoriev IV, Henrissat B, Santelli CM, Hansel CM
Comparative Analysis of Secretome Profiles of Manganese(II)-Oxidizing Ascomycete Fungi.
PLoS One. 2016;11(7):e0157844. doi: 10.1371/journal.pone.0157844

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.