Info • Alternaria arborescens BMP0308


The genome sequence and gene prediction of Alternaria arborescens BMP0308 ATCC11680 have not been determined by the Joint Genome Institute (JGI), but were provided by Christopher Lawrence and Ha X. Dang in Aug 2019 (Alternaria Genomes Database - AGD). In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. We have removed small scaffolds (<1kb) without gene models, and it thus differs from the original data present in the AGD. Please note that this copy of the genome is not maintained by the original authors and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.

Summary statistics for the Alternaria arborescens BMP0308 release are below.
Genome Assembly
Genome Assembly size (Mbp) 33.04
Sequencing read coverage depth 1x
# of contigs 6437
# of scaffolds 6437
# of scaffolds >= 2Kbp 4754
Scaffold N50 1374
Scaffold L50 (Mbp) 0.01
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.05, 0.04, 0.04

Gene Models ExternalModels
length (bp) of: average median
gene 1282 1071
transcript 1167 981
exon 507 319
intron 91 56
protein length (aa) 389 327
exons per gene 2.30 2
# of gene models 12114


Christopher B. Lawrence, Virgina Tech, USA


This project was not sequenced at the JGI.