Info • Alternaria capsici BMP0180


The genome sequence and gene prediction of Alternaria capsici BMP0180 have not been determined by the Joint Genome Institute (JGI), but were provided by Christopher Lawrence and Ha X. Dang in Aug 2019 (Alternaria Genomes Database - AGD). In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. We have removed small scaffolds (<1kb) without gene models, and it thus differs from the original data present in the AGD. Please note that this copy of the genome is not maintained by the original authors and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.

Summary statistics for the Alternaria capsici BMP0180 release are below.
Genome Assembly
Genome Assembly size (Mbp) 31.35
Sequencing read coverage depth
# of contigs 1864
# of scaffolds 1864
# of scaffolds >= 2Kbp 1543
Scaffold N50 270
Scaffold L50 (Mbp) 0.03
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.18, 0.16, 0.16

Gene Models ExternalModels
length (bp) of: average median
gene 1557 1311
transcript 1438 1203
exon 573 336
intron 81 56
protein length (aa) 479 401
exons per gene 2.51 2
# of gene models 11487


Christopher B. Lawrence, Virgina Tech, USA


This project was not sequenced at the JGI.