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Info • Alternaria carthami BMP1963

Status

The genome sequence and gene prediction of Alternaria carthami BMP1963 have not been determined by the Joint Genome Institute (JGI), but were provided by Christopher Lawrence and Ha X. Dang in Aug 2019 (Alternaria Genomes Database - AGD). In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. We have removed small scaffolds (<1kb) without gene models, and it thus differs from the original data present in the AGD. Please note that this copy of the genome is not maintained by the original authors and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.

Summary statistics for the Alternaria carthami BMP1963 release are below.
Genome Assembly
Genome Assembly size (Mbp) 32.68
Sequencing read coverage depth
# of contigs 1417
# of scaffolds 1269
# of scaffolds >= 2Kbp 958
Scaffold N50 132
Scaffold L50 (Mbp) 0.08
# of gaps 148
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.38, 0.29, 0.28


Gene Models ExternalModels
length (bp) of: average median
gene 1564 1318
transcript 1431 1200
exon 557 334
intron 86 56
description:
protein length (aa) 477 400
exons per gene 2.57 2
# of gene models 12071


Collaborators

Christopher B. Lawrence, Virgina Tech, USA

Funding

This project was not sequenced at the JGI.