Status
The genome sequence and gene prediction of Alternaria citriarbusti BMP2343 have not been determined by the Joint Genome Institute (JGI), but were provided by Christopher Lawrence and Ha X. Dang in Aug 2019 (Alternaria Genomes Database - AGD). In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. We have removed small scaffolds (<1kb) without gene models, and it thus differs from the original data present in the AGD. Please note that this copy of the genome is not maintained by the original authors and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.
Summary statistics for the Alternaria citriarbusti BMP2343
release are below.
Genome Assembly | |
Genome Assembly size (Mbp) | 33.87 |
Sequencing read coverage depth | unknown |
# of contigs | 1549 |
# of scaffolds | 1308 |
# of scaffolds >= 2Kbp | 1115 |
Scaffold N50 | 212 |
Scaffold L50 (Mbp) | 0.05 |
# of gaps | 241 |
% of scaffold length in gaps | 0.1% |
Three largest Scaffolds (Mbp) | 0.25, 0.22, 0.20 |
Gene Models | ExternalModels | |
length (bp) of: | average | median |
gene | 1543 | 1309 |
transcript | 1421 | 1197 |
exon | 566 | 336 |
intron | 83 | 56 |
description: | ||
protein length (aa) | 474 | 399 |
exons per gene | 2.51 | 2 |
# of gene models | 12606 |
Collaborators
Christopher B. Lawrence, Virgina Tech, USA
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Dothideomycetes Pleosporales Pleosporaceae Alternaria
- JGI EcoGroup Portals: Plant Pathogens
Funding
This project was not sequenced at the JGI.