Info • Alternaria crassa BMP0172


The genome sequence and gene prediction of Alternaria crassa BMP0172 have not been determined by the Joint Genome Institute (JGI), but were provided by Christopher Lawrence and Ha X. Dang in Aug 2019 (Alternaria Genomes Database - AGD). In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. We have removed small scaffolds (<1kb) without gene models, and it thus differs from the original data present in the AGD. Please note that this copy of the genome is not maintained by the original authors and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.

Summary statistics for the Alternaria crassa BMP0172 release are below.
Genome Assembly
Genome Assembly size (Mbp) 32.62
Sequencing read coverage depth unknown
# of contigs 1965
# of scaffolds 1592
# of scaffolds >= 2Kbp 1124
Scaffold N50 157
Scaffold L50 (Mbp) 0.06
# of gaps 373
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 0.33, 0.26, 0.23

Gene Models ExternalModels
length (bp) of: average median
gene 1557 1306
transcript 1426 1188
exon 560 331
intron 87 56
protein length (aa) 475 396
exons per gene 2.55 2
# of gene models 11663


Christopher B. Lawrence, Virgina Tech, USA


This project was not sequenced at the JGI.