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Info • Alternaria dauci BMP0167

Status

The genome sequence and gene prediction of Alternaria dauci BMP0167 have not been determined by the Joint Genome Institute (JGI), but were provided by Christopher Lawrence and Ha X. Dang in Aug 2019 (Alternaria Genomes Database - AGD). In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. We have removed small scaffolds (<1kb) without gene models, and it thus differs from the original data present in the AGD. Please note that this copy of the genome is not maintained by the original authors and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.

Summary statistics for the Alternaria dauci BMP0167 release are below.
Genome Assembly
Genome Assembly size (Mbp) 30.43
Sequencing read coverage depth unknown
# of contigs 3915
# of scaffolds 3701
# of scaffolds >= 2Kbp 3043
Scaffold N50 728
Scaffold L50 (Mbp) 0.01
# of gaps 214
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 0.07, 0.06, 0.06


Gene Models ExternalModels
length (bp) of: average median
gene 1427 1203
transcript 1318 1104
exon 551 326
intron 80 56
description:
protein length (aa) 439 368
exons per gene 2.39 2
# of gene models 11981


Collaborators

Christopher B. Lawrence, Virgina Tech, USA

Funding

This project was not sequenced at the JGI.