Info • Alternaria fragaria BMP3062


The genome sequence and gene prediction of Alternaria fragaria BMP3062 have not been determined by the Joint Genome Institute (JGI), but were provided by Christopher Lawrence and Ha X. Dang in Aug 2019 (Alternaria Genomes Database - AGD). In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. We have removed small scaffolds (<1kb) without gene models, and it thus differs from the original data present in the AGD. Please note that this copy of the genome is not maintained by the original authors and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.

Summary statistics for the Alternaria fragaria BMP3062 release are below.
Genome Assembly
Genome Assembly size (Mbp) 33.14
Sequencing read coverage depth unknown
# of contigs 905
# of scaffolds 782
# of scaffolds >= 2Kbp 731
Scaffold N50 126
Scaffold L50 (Mbp) 0.08
# of gaps 123
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.29, 0.29, 0.28

Gene Models ExternalModels
length (bp) of: average median
gene 1560 1326
transcript 1439 1218
exon 570 337
intron 82 56
protein length (aa) 480 406
exons per gene 2.52 2
# of gene models 12272


Christopher B. Lawrence, Virgina Tech, USA


This project was not sequenced at the JGI.