Info • Alternaria gaisen BMP2338


The genome sequence and gene prediction of Alternaria gaisen BMP2338 have not been determined by the Joint Genome Institute (JGI), but were provided by Christopher Lawrence and Ha X. Dang in Aug 2019 (Alternaria Genomes Database - AGD). In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. We have removed small scaffolds (<1kb) without gene models, and it thus differs from the original data present in the AGD. Please note that this copy of the genome is not maintained by the original authors and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.

Summary statistics for the Alternaria gaisen BMP2338 release are below.
Genome Assembly
Genome Assembly size (Mbp) 34.00
Sequencing read coverage depth unknown
# of contigs 5602
# of scaffolds 5602
# of scaffolds >= 2Kbp 4077
Scaffold N50 1052
Scaffold L50 (Mbp) 0.01
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.06, 0.05, 0.05

Gene Models ExternalModels
length (bp) of: average median
gene 1336 1117
transcript 1235 1026
exon 536 329
intron 79 55
protein length (aa) 412 342
exons per gene 2.30 2
# of gene models 13902


Christopher B. Lawrence, Virgina Tech, USA


This project was not sequenced at the JGI.