Info • Alternaria limoniasperae BMP2335


The genome sequence and gene prediction of Alternaria limoniasperae BMP2335 have not been determined by the Joint Genome Institute (JGI), but were provided by Christopher Lawrence and Ha X. Dang in Aug 2019 (Alternaria Genomes Database - AGD). In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. We have removed small scaffolds (<1kb) without gene models, and it thus differs from the original data present in the AGD. Please note that this copy of the genome is not maintained by the original authors and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.

Summary statistics for the Alternaria limoniasperae BMP2335 release are below.
Genome Assembly
Genome Assembly size (Mbp) 34.78
Sequencing read coverage depth unknown
# of contigs 1959
# of scaffolds 1675
# of scaffolds >= 2Kbp 1298
Scaffold N50 213
Scaffold L50 (Mbp) 0.05
# of gaps 284
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 0.27, 0.22, 0.20

Gene Models ExternalModels
length (bp) of: average median
gene 1521 1291
transcript 1400 1179
exon 564 336
intron 84 56
protein length (aa) 467 393
exons per gene 2.48 2
# of gene models 12966


Christopher B. Lawrence, Virgina Tech, USA


This project was not sequenced at the JGI.