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Info • Alternaria longipes BMP0313

Status

The genome sequence and gene prediction of Alternaria longipes BMP0313 have not been determined by the Joint Genome Institute (JGI), but were provided by Christopher Lawrence and Ha X. Dang in Aug 2019 (Alternaria Genomes Database - AGD). In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. We have removed small scaffolds (<1kb) without gene models, and it thus differs from the original data present in the AGD. Please note that this copy of the genome is not maintained by the original authors and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.

Summary statistics for the Alternaria longipes BMP0313 release are below.
Genome Assembly
Genome Assembly size (Mbp) 35.74
Sequencing read coverage depth unknown
# of contigs 1479
# of scaffolds 1235
# of scaffolds >= 2Kbp 723
Scaffold N50 68
Scaffold L50 (Mbp) 0.14
# of gaps 244
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 1.17, 0.73, 0.63


Gene Models ExternalModels
length (bp) of: average median
gene 1522 1290
transcript 1402 1179
exon 562 333
intron 83 56
description:
protein length (aa) 467 393
exons per gene 2.49 2
# of gene models 13219


Collaborators

Christopher B. Lawrence, Virgina Tech, USA

Funding

This project was not sequenced at the JGI.