Info • Alternaria porri BMP0178


The genome sequence and gene prediction of Alternaria porri BMP0178 have not been determined by the Joint Genome Institute (JGI), but were provided by Christopher Lawrence and Ha X. Dang in Aug 2019 (Alternaria Genomes Database - AGD). In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. We have removed small scaffolds (<1kb) without gene models, and it thus differs from the original data present in the AGD. Please note that this copy of the genome is not maintained by the original authors and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.

Summary statistics for the Alternaria porri BMP0178 release are below.
Genome Assembly
Genome Assembly size (Mbp) 29.24
Sequencing read coverage depth unknown
# of contigs 7779
# of scaffolds 5231
# of scaffolds >= 2Kbp 3629
Scaffold N50 939
Scaffold L50 (Mbp) 0.01
# of gaps 2548
% of scaffold length in gaps 0.6%
Three largest Scaffolds (Mbp) 0.05, 0.05, 0.04

Gene Models ExternalModels
length (bp) of: average median
gene 1311 1084
transcript 1174 972
exon 484 311
intron 98 57
protein length (aa) 391 324
exons per gene 2.43 2
# of gene models 12232


Christopher B. Lawrence, Virgina Tech, USA


This project was not sequenced at the JGI.